HEADER OXIDOREDUCTASE (NAD(A)-CHOH(D)) 30-MAY-90 8ICD TITLE REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.42; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS OXIDOREDUCTASE (NAD(A)-CHOH(D)) EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HURLEY,A.M.DEAN,J.L.SOHL,D.E.KOSHLANDJUNIOR,R.M.STROUD REVDAT 6 14-FEB-24 8ICD 1 REMARK SEQADV LINK REVDAT 5 29-NOV-17 8ICD 1 HELIX REVDAT 4 13-JUL-11 8ICD 1 VERSN REVDAT 3 24-FEB-09 8ICD 1 VERSN REVDAT 2 15-JUL-93 8ICD 1 SHEET REVDAT 1 15-OCT-91 8ICD 0 JRNL AUTH J.H.HURLEY,A.M.DEAN,J.L.SOHL,D.E.KOSHLAND,R.M.STROUD JRNL TITL REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE JRNL TITL 2 SITE. JRNL REF SCIENCE V. 249 1012 1990 JRNL REFN ISSN 0036-8075 JRNL PMID 2204109 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.H.HURLEY,A.M.DEAN,P.E.THORSNESS,D.E.KOSHLANDJUNIOR, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL REGULATION OF ISOCITRATE DEHYDROGENASE BY PHOSPHORYLATION REMARK 1 TITL 2 INVOLVES NO LONG-RANGE CONFORMATIONAL CHANGE IN THE FREE REMARK 1 TITL 3 ENZYME REMARK 1 REF J.BIOL.CHEM. V. 265 3599 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.HURLEY,A.M.DEAN,J.L.SOHL,D.E.KOSHLANDJUNIOR,R.M.STROUD REMARK 1 TITL REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE REMARK 1 TITL 2 SITE REMARK 1 REF SCIENCE V. 249 1012 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.H.HURLEY,P.E.THORSNESS,V.RAMALINGAM,N.H.HELMERS, REMARK 1 AUTH 2 D.E.KOSHLANDJUNIOR,R.M.STROUD REMARK 1 TITL STRUCTURE OF A BACTERIAL ENZYME REGULATED BY REMARK 1 TITL 2 PHOSPHORYLATION, ISOCITRATE DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 86 8635 1989 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ICD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.72500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 143 NE2 HIS A 143 CD2 -0.081 REMARK 500 HIS A 193 NE2 HIS A 193 CD2 -0.083 REMARK 500 HIS A 339 NE2 HIS A 339 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP A 65 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 65 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 83 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 83 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 160 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 160 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 165 CD1 - CG - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TRP A 165 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 165 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 216 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TRP A 244 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 244 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 244 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 ILE A 258 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 TRP A 263 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 263 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP A 369 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 369 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 369 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 THR A 388 CA - CB - CG2 ANGL. DEV. = 8.4 DEGREES REMARK 500 VAL A 389 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 82.74 51.12 REMARK 500 ASN A 26 77.84 -118.85 REMARK 500 ILE A 37 0.31 -63.96 REMARK 500 GLN A 80 -32.85 -38.38 REMARK 500 ARG A 96 -41.98 73.36 REMARK 500 GLU A 113 112.12 -24.26 REMARK 500 ASP A 148 85.25 -150.27 REMARK 500 GLU A 157 -152.60 -130.58 REMARK 500 ASP A 158 -174.27 74.64 REMARK 500 HIS A 193 40.80 38.62 REMARK 500 ASP A 221 67.33 17.55 REMARK 500 LYS A 230 53.94 -112.57 REMARK 500 ARG A 292 55.54 -149.36 REMARK 500 ASP A 297 -92.95 -138.45 REMARK 500 ALA A 342 62.17 37.99 REMARK 500 TRP A 369 59.28 -98.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 57 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 417 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 283 OD2 REMARK 620 2 ASP A 307 OD2 95.4 REMARK 620 3 ICT A 418 O7 87.0 98.4 REMARK 620 4 ICT A 418 O2 159.1 78.1 74.5 REMARK 620 5 HOH A 445 O 119.6 84.0 153.0 79.9 REMARK 620 6 HOH A 482 O 85.4 171.1 90.5 104.2 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ICT A 418 DBREF 8ICD A 1 416 UNP P08200 IDH_ECOLI 1 416 SEQADV 8ICD GLU A 113 UNP P08200 SER 113 CONFLICT SEQRES 1 A 416 MET GLU SER LYS VAL VAL VAL PRO ALA GLN GLY LYS LYS SEQRES 2 A 416 ILE THR LEU GLN ASN GLY LYS LEU ASN VAL PRO GLU ASN SEQRES 3 A 416 PRO ILE ILE PRO TYR ILE GLU GLY ASP GLY ILE GLY VAL SEQRES 4 A 416 ASP VAL THR PRO ALA MET LEU LYS VAL VAL ASP ALA ALA SEQRES 5 A 416 VAL GLU LYS ALA TYR LYS GLY GLU ARG LYS ILE SER TRP SEQRES 6 A 416 MET GLU ILE TYR THR GLY GLU LYS SER THR GLN VAL TYR SEQRES 7 A 416 GLY GLN ASP VAL TRP LEU PRO ALA GLU THR LEU ASP LEU SEQRES 8 A 416 ILE ARG GLU TYR ARG VAL ALA ILE LYS GLY PRO LEU THR SEQRES 9 A 416 THR PRO VAL GLY GLY GLY ILE ARG GLU LEU ASN VAL ALA SEQRES 10 A 416 LEU ARG GLN GLU LEU ASP LEU TYR ILE CYS LEU ARG PRO SEQRES 11 A 416 VAL ARG TYR TYR GLN GLY THR PRO SER PRO VAL LYS HIS SEQRES 12 A 416 PRO GLU LEU THR ASP MET VAL ILE PHE ARG GLU ASN SER SEQRES 13 A 416 GLU ASP ILE TYR ALA GLY ILE GLU TRP LYS ALA ASP SER SEQRES 14 A 416 ALA ASP ALA GLU LYS VAL ILE LYS PHE LEU ARG GLU GLU SEQRES 15 A 416 MET GLY VAL LYS LYS ILE ARG PHE PRO GLU HIS CYS GLY SEQRES 16 A 416 ILE GLY ILE LYS PRO CYS SER GLU GLU GLY THR LYS ARG SEQRES 17 A 416 LEU VAL ARG ALA ALA ILE GLU TYR ALA ILE ALA ASN ASP SEQRES 18 A 416 ARG ASP SER VAL THR LEU VAL HIS LYS GLY ASN ILE MET SEQRES 19 A 416 LYS PHE THR GLU GLY ALA PHE LYS ASP TRP GLY TYR GLN SEQRES 20 A 416 LEU ALA ARG GLU GLU PHE GLY GLY GLU LEU ILE ASP GLY SEQRES 21 A 416 GLY PRO TRP LEU LYS VAL LYS ASN PRO ASN THR GLY LYS SEQRES 22 A 416 GLU ILE VAL ILE LYS ASP VAL ILE ALA ASP ALA PHE LEU SEQRES 23 A 416 GLN GLN ILE LEU LEU ARG PRO ALA GLU TYR ASP VAL ILE SEQRES 24 A 416 ALA CYS MET ASN LEU ASN GLY ASP TYR ILE SER ASP ALA SEQRES 25 A 416 LEU ALA ALA GLN VAL GLY GLY ILE GLY ILE ALA PRO GLY SEQRES 26 A 416 ALA ASN ILE GLY ASP GLU CYS ALA LEU PHE GLU ALA THR SEQRES 27 A 416 HIS GLY THR ALA PRO LYS TYR ALA GLY GLN ASP LYS VAL SEQRES 28 A 416 ASN PRO GLY SER ILE ILE LEU SER ALA GLU MET MET LEU SEQRES 29 A 416 ARG HIS MET GLY TRP THR GLU ALA ALA ASP LEU ILE VAL SEQRES 30 A 416 LYS GLY MET GLU GLY ALA ILE ASN ALA LYS THR VAL THR SEQRES 31 A 416 TYR ASP PHE GLU ARG LEU MET ASP GLY ALA LYS LEU LEU SEQRES 32 A 416 LYS CYS SER GLU PHE GLY ASP ALA ILE ILE GLU ASN MET HET MG A 417 1 HET ICT A 418 13 HETNAM MG MAGNESIUM ION HETNAM ICT ISOCITRIC ACID FORMUL 2 MG MG 2+ FORMUL 3 ICT C6 H8 O7 FORMUL 4 HOH *64(H2 O) HELIX 1 HA ILE A 37 LYS A 58 1 22 HELIX 2 HB THR A 70 TYR A 78 1 9 HELIX 3 HC PRO A 85 TYR A 95 1 11 HELIX 4 HD GLU A 113 LEU A 124 1 12 HELIX 5 HE ASP A 168 MET A 183 1 16 HELIX 6 HF GLU A 203 ARG A 222 1 20 HELIX 7 HG LYS A 235 PHE A 253 1 19 HELIX 8 HH ILE A 281 LEU A 291 1 11 HELIX 9 HI ASN A 303 VAL A 317 1 15 HELIX 10 HJ PRO A 353 MET A 367 1 15 HELIX 11 HK TRP A 369 THR A 388 1 20 HELIX 12 HL THR A 390 MET A 397 1 8 HELIX 13 HM LYS A 404 ASN A 415 1 12 SHEET 1 S112 ARG A 61 ILE A 68 0 SHEET 2 S112 GLU A 25 ILE A 32 1 SHEET 3 S112 ARG A 96 LYS A 100 1 SHEET 4 S112 ALA A 333 GLU A 336 1 SHEET 5 S112 GLY A 325 ILE A 328 -1 SHEET 6 S112 TYR A 125 ARG A 132 -1 SHEET 7 S112 THR A 147 ARG A 153 -1 SHEET 8 S112 ASP A 297 MET A 302 1 SHEET 9 S112 SER A 224 HIS A 229 1 SHEET 10 S112 LYS A 273 VAL A 280 1 SHEET 11 S112 LEU A 264 LYS A 267 -1 SHEET 12 S112 GLY A 254 GLU A 256 -1 SHEET 1 S2 2 ILE A 163 ALA A 167 0 SHEET 2 S2 2 HIS A 193 SER A 202 -1 LINK OD2 ASP A 283 MG MG A 417 7555 1555 2.11 LINK OD2 ASP A 307 MG MG A 417 1555 1555 2.21 LINK MG MG A 417 O7 ICT A 418 1555 1555 2.04 LINK MG MG A 417 O2 ICT A 418 1555 1555 2.42 LINK MG MG A 417 O HOH A 445 1555 1555 1.96 LINK MG MG A 417 O HOH A 482 1555 1555 2.25 CISPEP 1 GLY A 261 PRO A 262 0 2.06 SITE 1 AC1 5 ASP A 283 ASP A 307 ICT A 418 HOH A 445 SITE 2 AC1 5 HOH A 482 SITE 1 AC2 13 GLU A 113 ASN A 115 ARG A 119 ARG A 129 SITE 2 AC2 13 ARG A 153 TYR A 160 LYS A 230 ASP A 283 SITE 3 AC2 13 ASP A 307 MG A 417 HOH A 445 HOH A 480 SITE 4 AC2 13 HOH A 482 CRYST1 105.100 105.100 150.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006653 0.00000 TER 3151 MET A 416 HETATM 3152 MG MG A 417 84.548 70.123 1.925 1.00 29.87 MG HETATM 3153 C1 ICT A 418 85.223 67.594 3.431 1.00 37.90 C HETATM 3154 O1 ICT A 418 85.816 66.911 4.231 1.00 42.00 O HETATM 3155 O2 ICT A 418 84.609 68.590 3.801 1.00 39.31 O HETATM 3156 C2 ICT A 418 85.233 67.225 1.964 1.00 37.17 C HETATM 3157 O7 ICT A 418 84.757 68.269 1.108 1.00 35.05 O HETATM 3158 C3 ICT A 418 84.290 66.043 1.781 1.00 40.99 C HETATM 3159 C4 ICT A 418 84.406 65.378 0.389 1.00 44.78 C HETATM 3160 C5 ICT A 418 85.787 64.712 0.260 1.00 48.71 C HETATM 3161 O3 ICT A 418 86.389 64.748 -0.821 1.00 51.15 O HETATM 3162 O4 ICT A 418 86.225 64.131 1.282 1.00 48.05 O HETATM 3163 C6 ICT A 418 82.857 66.393 2.195 1.00 41.59 C HETATM 3164 O5 ICT A 418 82.506 66.176 3.352 1.00 39.03 O HETATM 3165 O6 ICT A 418 82.146 66.893 1.349 1.00 41.65 O HETATM 3166 O HOH A 419 86.273 85.911 16.523 1.00 53.27 O HETATM 3167 O HOH A 420 89.989 74.440 9.592 1.00 17.41 O HETATM 3168 O HOH A 421 82.708 83.793 1.483 1.00 32.98 O HETATM 3169 O HOH A 422 98.765 68.697 4.944 1.00 14.12 O HETATM 3170 O HOH A 423 98.536 70.671 1.806 1.00 39.98 O HETATM 3171 O HOH A 424 95.302 54.436 22.107 1.00 16.30 O HETATM 3172 O HOH A 425 89.886 52.136 24.846 1.00 39.59 O HETATM 3173 O HOH A 426 100.647 56.337 0.674 1.00 44.97 O HETATM 3174 O HOH A 427 107.447 58.107 18.484 1.00 24.52 O HETATM 3175 O HOH A 428 111.300 63.965 15.331 1.00 32.84 O HETATM 3176 O HOH A 429 109.721 61.255 23.214 1.00 45.54 O HETATM 3177 O HOH A 430 108.818 63.066 25.869 1.00 18.10 O HETATM 3178 O HOH A 431 76.646 58.752 12.082 1.00 40.98 O HETATM 3179 O HOH A 432 86.274 86.206 13.391 1.00 20.58 O HETATM 3180 O HOH A 433 71.196 60.420 8.615 1.00 23.23 O HETATM 3181 O HOH A 434 68.200 61.675 11.231 1.00 24.53 O HETATM 3182 O HOH A 435 73.412 68.188 9.077 1.00 10.97 O HETATM 3183 O HOH A 436 80.388 64.969 6.848 1.00 28.97 O HETATM 3184 O HOH A 437 74.517 65.182 15.390 1.00 21.88 O HETATM 3185 O HOH A 438 71.142 62.796 -1.286 1.00 32.83 O HETATM 3186 O HOH A 439 70.729 62.101 1.897 1.00 30.86 O HETATM 3187 O HOH A 440 82.285 70.665 22.772 1.00 33.60 O HETATM 3188 O HOH A 441 82.452 82.903 27.112 1.00 40.17 O HETATM 3189 O HOH A 442 79.738 83.403 16.215 1.00 16.62 O HETATM 3190 O HOH A 443 81.749 87.310 18.092 1.00 42.92 O HETATM 3191 O HOH A 444 72.672 74.681 8.500 1.00 24.56 O HETATM 3192 O HOH A 445 84.645 71.399 3.410 1.00 27.48 O HETATM 3193 O HOH A 446 79.082 59.283 18.749 1.00 26.24 O HETATM 3194 O HOH A 447 82.136 57.592 18.391 1.00 31.19 O HETATM 3195 O HOH A 448 104.514 66.173 -2.832 1.00 23.36 O HETATM 3196 O HOH A 449 101.040 57.887 -2.785 1.00 29.06 O HETATM 3197 O HOH A 450 95.264 73.486 14.774 1.00 16.34 O HETATM 3198 O HOH A 451 112.889 78.657 9.935 1.00 47.69 O HETATM 3199 O HOH A 452 87.691 60.138 0.099 1.00 39.84 O HETATM 3200 O HOH A 453 88.799 60.801 -4.148 1.00 42.13 O HETATM 3201 O HOH A 454 95.516 55.540 2.627 1.00 20.29 O HETATM 3202 O HOH A 455 74.805 58.893 9.975 1.00 42.04 O HETATM 3203 O HOH A 456 70.959 63.603 -4.081 1.00 19.38 O HETATM 3204 O HOH A 457 84.663 71.687 24.548 1.00 44.29 O HETATM 3205 O HOH A 458 87.662 72.926 23.864 1.00 51.99 O HETATM 3206 O HOH A 459 106.262 60.729 20.160 1.00 38.08 O HETATM 3207 O HOH A 460 64.392 81.163 21.775 1.00 38.61 O HETATM 3208 O HOH A 461 85.664 83.835 2.452 1.00 37.07 O HETATM 3209 O HOH A 462 107.757 72.762 -1.693 1.00 16.73 O HETATM 3210 O HOH A 463 74.012 61.853 -0.877 1.00 25.42 O HETATM 3211 O HOH A 464 96.067 53.312 4.266 1.00 21.31 O HETATM 3212 O HOH A 465 73.239 72.279 5.584 1.00 25.02 O HETATM 3213 O HOH A 466 97.909 53.713 6.335 1.00 20.67 O HETATM 3214 O HOH A 467 88.468 74.557 7.149 1.00 26.91 O HETATM 3215 O HOH A 468 96.572 81.755 7.634 1.00 26.35 O HETATM 3216 O HOH A 469 89.087 88.636 7.375 1.00 36.69 O HETATM 3217 O HOH A 470 70.082 86.709 8.514 1.00 34.41 O HETATM 3218 O HOH A 471 85.067 93.045 10.969 1.00 47.83 O HETATM 3219 O HOH A 472 60.669 70.257 11.517 1.00 20.26 O HETATM 3220 O HOH A 473 93.347 77.541 11.968 1.00 25.04 O HETATM 3221 O HOH A 474 71.381 68.438 11.975 1.00 30.18 O HETATM 3222 O HOH A 475 77.283 66.877 22.336 1.00 32.58 O HETATM 3223 O HOH A 476 89.095 60.139 21.560 1.00 42.42 O HETATM 3224 O HOH A 477 91.191 69.661 19.544 1.00 38.30 O HETATM 3225 O HOH A 478 87.315 67.732 9.581 1.00 37.10 O HETATM 3226 O HOH A 479 78.317 59.574 -1.368 1.00 47.39 O HETATM 3227 O HOH A 480 67.558 85.031 1.701 1.00 49.40 O HETATM 3228 O HOH A 481 87.589 71.757 -1.509 1.00 34.53 O HETATM 3229 O HOH A 482 86.711 70.571 1.508 1.00 37.61 O CONECT 2356 3152 CONECT 3152 2356 3155 3157 3192 CONECT 3152 3229 CONECT 3153 3154 3155 3156 CONECT 3154 3153 CONECT 3155 3152 3153 CONECT 3156 3153 3157 3158 CONECT 3157 3152 3156 CONECT 3158 3156 3159 3163 CONECT 3159 3158 3160 CONECT 3160 3159 3161 3162 CONECT 3161 3160 CONECT 3162 3160 CONECT 3163 3158 3164 3165 CONECT 3164 3163 CONECT 3165 3163 CONECT 3192 3152 CONECT 3229 3152 MASTER 414 0 2 13 14 0 6 6 3228 1 18 32 END