HEADER TRANSFERASE/DNA 15-DEC-95 8ICL TITLE DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE TITLE 2 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND NICL2 TITLE 3 (5 MILLIMOLAR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 4 02-AUG-23 8ICL 1 REMARK LINK REVDAT 3 24-FEB-09 8ICL 1 VERSN REVDAT 2 01-APR-03 8ICL 1 JRNL REVDAT 1 15-NOV-96 8ICL 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT JRNL TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE JRNL TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 35 12762 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841119 JRNL DOI 10.1021/BI9529566 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 9210 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1640 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 289 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; 0.020 ; 3009 REMARK 3 BOND ANGLES (DEGREES) : 3.000 ; 3.000 ; 4068 REMARK 3 TORSION ANGLES (DEGREES) : 18.500; NULL ; 1800 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.014 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.005 ; 0.020 ; 395 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.000 ; 6.000 ; 3009 REMARK 3 NON-BONDED CONTACTS (A) : 0.027 ; 0.020 ; 208 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 1080. REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ICL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000179990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9210 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 8ICB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DATP, REMARK 280 1 MILLIMOLAR NICL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.36050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.89200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.36050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.89200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA T 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA T 8 C2 N3 C4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 GLU A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 1 O3' DC T 1 C3' 0.118 REMARK 500 DA T 5 O4' DA T 5 C4' -0.061 REMARK 500 DA T 5 N1 DA T 5 C2 0.065 REMARK 500 DA T 5 C6 DA T 5 N1 0.049 REMARK 500 DA T 5 C5 DA T 5 N7 -0.058 REMARK 500 DA T 5 N9 DA T 5 C4 -0.068 REMARK 500 DA T 5 C6 DA T 5 N6 0.051 REMARK 500 DG T 6 O3' DG T 6 C3' -0.156 REMARK 500 DA T 7 O3' DA T 7 C3' -0.078 REMARK 500 DA T 7 C5 DA T 7 C6 -0.055 REMARK 500 DT P 1 C5 DT P 1 C6 -0.050 REMARK 500 DC P 2 C1' DC P 2 N1 0.150 REMARK 500 DC P 2 N1 DC P 2 C2 0.072 REMARK 500 DT P 3 O3' DT P 3 C3' -0.053 REMARK 500 DT P 3 N1 DT P 3 C2 0.088 REMARK 500 DT P 3 N3 DT P 3 C4 -0.053 REMARK 500 DA P 5 O3' DA P 5 C3' -0.054 REMARK 500 DT P 6 C2 DT P 6 N3 -0.050 REMARK 500 DG P 7 P DG P 7 O5' 0.069 REMARK 500 DG P 7 C5' DG P 7 C4' 0.055 REMARK 500 TYR A 39 CB TYR A 39 CG -0.100 REMARK 500 GLU A 58 CD GLU A 58 OE1 0.078 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.069 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.083 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.084 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.084 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.068 REMARK 500 GLU A 186 CD GLU A 186 OE1 0.067 REMARK 500 GLU A 203 CD GLU A 203 OE1 0.085 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.066 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.090 REMARK 500 TYR A 271 CB TYR A 271 CG -0.112 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.070 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.074 REMARK 500 GLU A 309 CD GLU A 309 OE2 0.080 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.078 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DC T 1 C6 - N1 - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC T 1 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 DA T 2 C8 - N9 - C1' ANGL. DEV. = 18.6 DEGREES REMARK 500 DA T 2 C4 - N9 - C1' ANGL. DEV. = -19.7 DEGREES REMARK 500 DT T 3 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT T 4 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -21.6 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 22.1 DEGREES REMARK 500 DA T 5 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA T 5 C2 - N3 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA T 5 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA T 5 C5 - C6 - N1 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA T 5 C4 - C5 - N7 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA T 5 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA T 5 N9 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 DA T 5 C6 - C5 - N7 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA T 5 N1 - C6 - N6 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG T 6 C8 - N9 - C1' ANGL. DEV. = 17.1 DEGREES REMARK 500 DG T 6 C4 - N9 - C1' ANGL. DEV. = -15.3 DEGREES REMARK 500 DA T 7 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA T 7 N1 - C6 - N6 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA T 7 C5 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA T 7 C8 - N9 - C1' ANGL. DEV. = 35.1 DEGREES REMARK 500 DA T 7 C4 - N9 - C1' ANGL. DEV. = -37.1 DEGREES REMARK 500 DT P 1 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT P 1 C6 - N1 - C1' ANGL. DEV. = -41.0 DEGREES REMARK 500 DT P 1 C2 - N1 - C1' ANGL. DEV. = 41.0 DEGREES REMARK 500 DC P 2 C6 - N1 - C2 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC P 2 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC P 2 C6 - N1 - C1' ANGL. DEV. = -10.4 DEGREES REMARK 500 DC P 2 C2 - N1 - C1' ANGL. DEV. = 14.1 DEGREES REMARK 500 DT P 3 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DT P 3 N1 - C1' - C2' ANGL. DEV. = 10.0 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT P 3 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT P 3 N1 - C2 - O2 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT P 3 N3 - C2 - O2 ANGL. DEV. = -7.2 DEGREES REMARK 500 DT P 3 N3 - C4 - O4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT P 3 C6 - N1 - C1' ANGL. DEV. = -23.1 DEGREES REMARK 500 DT P 3 C2 - N1 - C1' ANGL. DEV. = 23.0 DEGREES REMARK 500 DA P 4 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DA P 4 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA P 4 C8 - N9 - C1' ANGL. DEV. = -15.3 DEGREES REMARK 500 DA P 4 C4 - N9 - C1' ANGL. DEV. = 14.9 DEGREES REMARK 500 DA P 5 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 DT P 6 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT P 6 C6 - N1 - C1' ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 96 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -21.69 -162.54 REMARK 500 ASN A 28 -89.12 -84.91 REMARK 500 ALA A 32 75.09 -109.76 REMARK 500 LYS A 60 -32.76 -35.74 REMARK 500 ASP A 91 112.72 -36.09 REMARK 500 CYS A 178 -147.34 -85.66 REMARK 500 ARG A 183 34.20 -90.83 REMARK 500 ALA A 185 117.08 -7.83 REMARK 500 ASP A 190 149.46 -177.05 REMARK 500 SER A 202 -52.98 -17.49 REMARK 500 GLU A 203 -65.82 -93.00 REMARK 500 SER A 204 94.39 -30.33 REMARK 500 THR A 205 70.27 -37.55 REMARK 500 LYS A 206 -179.50 58.08 REMARK 500 GLN A 207 75.82 171.47 REMARK 500 HIS A 222 23.63 87.61 REMARK 500 SER A 229 137.73 -175.19 REMARK 500 GLU A 232 0.74 -65.00 REMARK 500 THR A 233 -10.46 -151.24 REMARK 500 LYS A 244 -149.70 -39.86 REMARK 500 ASN A 245 37.65 -76.61 REMARK 500 ASP A 246 146.57 42.09 REMARK 500 GLU A 247 -13.92 135.84 REMARK 500 LYS A 262 -14.69 -47.32 REMARK 500 ASP A 263 39.67 -93.74 REMARK 500 GLN A 264 -1.05 -166.92 REMARK 500 ASN A 279 -72.66 -67.38 REMARK 500 LYS A 289 13.47 -60.29 REMARK 500 GLU A 295 -16.70 -32.15 REMARK 500 THR A 304 -3.79 -47.46 REMARK 500 GLU A 309 18.80 123.04 REMARK 500 PRO A 310 98.43 3.27 REMARK 500 SER A 315 157.42 166.82 REMARK 500 ASP A 332 53.21 -106.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DTP A 338 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT P 6 OP2 REMARK 620 2 DT P 6 OP1 43.2 REMARK 620 3 THR A 101 O 123.5 151.9 REMARK 620 4 VAL A 103 O 127.5 84.7 99.0 REMARK 620 5 ILE A 106 O 72.1 72.8 79.4 89.2 REMARK 620 6 HOH A 601 O 92.1 109.4 94.2 116.0 154.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 342 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 80.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 339 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 DTP A 338 O1A 118.1 REMARK 620 3 DTP A 338 O1G 102.2 129.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 8ICL A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 8ICL T 1 8 PDB 8ICL 8ICL 1 8 DBREF 8ICL P 1 7 PDB 8ICL 8ICL 1 7 SEQRES 1 T 8 DC DA DT DT DA DG DA DA SEQRES 1 P 7 DT DC DT DA DA DT DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET NI A 339 1 HET NI A 340 1 HET NA A 341 1 HET NA A 342 1 HET DTP A 338 13 HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE FORMUL 4 NI 2(NI 2+) FORMUL 6 NA 2(NA 1+) FORMUL 8 DTP C10 H16 N5 O12 P3 FORMUL 9 HOH *138(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP2 DT P 6 NA NA A 341 1555 1555 3.59 LINK OP1 DT P 6 NA NA A 341 1555 1555 2.23 LINK O3' DG P 7 NI NI A 340 1555 1555 2.23 LINK O LYS A 60 NA NA A 342 1555 1555 2.65 LINK O LEU A 62 NA NA A 342 1555 1555 2.04 LINK O THR A 101 NA NA A 341 1555 1555 2.12 LINK O VAL A 103 NA NA A 341 1555 1555 2.47 LINK O ILE A 106 NA NA A 341 1555 1555 2.65 LINK OD1 ASP A 190 NI NI A 339 1555 1555 2.60 LINK O1A DTP A 338 NI NI A 339 1555 1555 1.36 LINK O1G DTP A 338 NI NI A 339 1555 1555 2.47 LINK NA NA A 341 O HOH A 601 1555 1555 2.71 CISPEP 1 GLY A 274 SER A 275 0 -0.51 SITE 1 AC1 4 ASP A 190 ASP A 192 DTP A 338 NI A 340 SITE 1 AC2 5 ASP A 190 ASP A 192 DTP A 338 NI A 339 SITE 2 AC2 5 DG P 7 SITE 1 AC3 6 THR A 101 ARG A 102 VAL A 103 ILE A 106 SITE 2 AC3 6 HOH A 601 DT P 6 SITE 1 AC4 3 LYS A 60 LEU A 62 VAL A 65 SITE 1 AC5 10 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC5 10 SER A 188 GLY A 189 ASP A 190 ASP A 192 SITE 3 AC5 10 NI A 339 NI A 340 CRYST1 178.721 57.784 48.382 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020669 0.00000 TER 146 DA T 8 TER 291 DG P 7 TER 2915 GLU A 335 HETATM 2916 NI NI A 339 72.740 34.203 51.333 0.53 30.00 NI HETATM 2917 NI NI A 340 70.273 32.396 50.283 0.47 30.00 NI HETATM 2918 NA NA A 341 60.270 30.201 59.023 1.00 2.39 NA HETATM 2919 NA NA A 342 47.351 62.101 51.705 1.00 37.26 NA HETATM 2920 PG DTP A 338 73.936 36.273 53.392 0.50 30.88 P HETATM 2921 O1G DTP A 338 74.591 35.186 52.641 0.50 4.07 O HETATM 2922 O2G DTP A 338 74.749 37.030 54.395 0.50 80.84 O HETATM 2923 O3G DTP A 338 72.617 35.695 54.051 0.50 60.45 O HETATM 2924 PB DTP A 338 73.451 37.559 50.794 0.50 93.19 P HETATM 2925 O1B DTP A 338 73.768 38.986 50.558 0.50 79.90 O HETATM 2926 O2B DTP A 338 74.376 36.538 50.246 0.50100.00 O HETATM 2927 O3B DTP A 338 73.268 37.331 52.355 0.50 70.96 O HETATM 2928 PA DTP A 338 71.142 35.962 49.864 0.50100.00 P HETATM 2929 O1A DTP A 338 71.832 34.825 50.530 0.50 84.37 O HETATM 2930 O2A DTP A 338 69.688 36.151 50.143 0.50 93.11 O HETATM 2931 O3A DTP A 338 71.932 37.293 50.258 0.50 85.91 O HETATM 2932 O5' DTP A 338 71.390 35.905 48.293 0.50 77.97 O HETATM 2933 O HOH T 517 59.017 13.618 51.465 1.00 30.03 O HETATM 2934 O HOH T 525 52.766 27.025 41.811 1.00 28.39 O HETATM 2935 O HOH T 526 53.601 30.299 42.898 1.00 44.55 O HETATM 2936 O HOH T 527 59.642 23.702 48.103 1.00 41.36 O HETATM 2937 O HOH T 535 63.783 30.305 42.600 1.00 39.74 O HETATM 2938 O HOH T 545 60.825 15.600 41.949 1.00 47.65 O HETATM 2939 O HOH T 546 61.813 15.864 47.639 1.00 89.22 O HETATM 2940 O HOH T 547 54.917 16.471 54.318 1.00 24.86 O HETATM 2941 O HOH T 564 55.953 22.468 50.820 1.00 6.65 O HETATM 2942 O HOH T 585 65.266 31.214 39.759 1.00 39.74 O HETATM 2943 O HOH T 595 54.816 24.523 52.020 1.00 32.37 O HETATM 2944 O HOH T 634 45.497 20.345 50.105 1.00 83.25 O HETATM 2945 O HOH T 651 49.518 20.682 50.617 1.00 82.61 O HETATM 2946 O HOH T 652 51.720 18.843 44.143 1.00 21.78 O HETATM 2947 O HOH P 510 53.461 32.033 53.463 1.00 55.57 O HETATM 2948 O HOH P 511 50.121 26.008 50.775 1.00 79.20 O HETATM 2949 O HOH P 534 66.181 32.316 55.966 1.00 80.61 O HETATM 2950 O HOH P 565 58.906 25.866 51.842 1.00 12.40 O HETATM 2951 O HOH P 566 63.869 34.563 55.536 1.00 85.51 O HETATM 2952 O HOH P 567 60.400 33.362 53.100 1.00 68.70 O HETATM 2953 O HOH P 569 46.641 27.393 52.384 1.00 64.91 O HETATM 2954 O HOH P 570 47.087 31.224 43.784 1.00 22.76 O HETATM 2955 O HOH P 594 60.268 25.951 48.132 1.00 35.29 O HETATM 2956 O HOH P 599 47.968 28.109 41.346 1.00 69.95 O HETATM 2957 O HOH P 615 42.758 30.807 49.019 1.00 61.44 O HETATM 2958 O HOH P 635 44.591 23.993 47.417 1.00 58.12 O HETATM 2959 O HOH P 648 57.819 33.477 53.957 1.00 85.03 O HETATM 2960 O HOH P 653 65.775 34.973 42.779 1.00 41.36 O HETATM 2961 O HOH A 501 84.393 39.991 28.386 1.00 44.91 O HETATM 2962 O HOH A 502 76.878 32.586 50.198 1.00 8.67 O HETATM 2963 O HOH A 503 73.829 28.446 60.051 1.00 18.02 O HETATM 2964 O HOH A 505 65.912 31.638 61.027 1.00 19.72 O HETATM 2965 O HOH A 506 53.749 49.529 48.537 1.00 65.46 O HETATM 2966 O HOH A 507 87.234 39.960 52.925 1.00 22.96 O HETATM 2967 O HOH A 508 74.941 35.643 31.449 1.00 21.25 O HETATM 2968 O HOH A 509 66.198 12.547 52.292 1.00 54.66 O HETATM 2969 O HOH A 512 57.442 21.151 53.268 1.00 5.90 O HETATM 2970 O HOH A 513 59.811 22.053 50.594 1.00 14.85 O HETATM 2971 O HOH A 514 65.761 28.927 61.842 1.00 34.87 O HETATM 2972 O HOH A 515 60.263 12.840 58.021 1.00 24.17 O HETATM 2973 O HOH A 516 64.108 12.388 56.866 1.00 16.16 O HETATM 2974 O HOH A 518 74.378 15.836 63.122 1.00 26.02 O HETATM 2975 O HOH A 519 69.773 12.630 52.568 1.00 63.47 O HETATM 2976 O HOH A 520 78.822 14.233 57.276 1.00 36.80 O HETATM 2977 O HOH A 521 80.606 25.773 58.657 1.00 23.09 O HETATM 2978 O HOH A 522 77.721 35.583 52.173 1.00 37.28 O HETATM 2979 O HOH A 523 71.952 32.300 59.327 1.00 9.77 O HETATM 2980 O HOH A 524 41.492 49.827 64.218 1.00 52.45 O HETATM 2981 O HOH A 528 72.451 42.039 52.194 1.00 45.47 O HETATM 2982 O HOH A 529 74.517 42.344 54.073 1.00 39.48 O HETATM 2983 O HOH A 530 81.802 35.708 53.273 1.00 38.86 O HETATM 2984 O HOH A 531 73.938 33.855 24.703 1.00 25.63 O HETATM 2985 O HOH A 532 71.285 38.469 45.227 1.00 35.24 O HETATM 2986 O HOH A 533 73.107 29.115 57.606 1.00 23.63 O HETATM 2987 O HOH A 536 73.435 35.678 29.082 1.00 32.46 O HETATM 2988 O HOH A 537 62.493 24.989 35.290 1.00 75.62 O HETATM 2989 O HOH A 538 66.050 26.769 39.479 1.00 57.22 O HETATM 2990 O HOH A 539 56.152 24.167 54.278 1.00 5.89 O HETATM 2991 O HOH A 541 70.417 12.178 41.429 1.00 33.95 O HETATM 2992 O HOH A 542 73.927 11.910 53.327 1.00 45.17 O HETATM 2993 O HOH A 543 71.076 13.866 59.061 1.00 39.47 O HETATM 2994 O HOH A 544 66.413 13.527 55.221 1.00 40.95 O HETATM 2995 O HOH A 550 78.278 15.357 33.118 1.00 25.86 O HETATM 2996 O HOH A 551 82.038 16.945 29.712 1.00 47.38 O HETATM 2997 O HOH A 552 87.038 15.666 35.276 1.00 31.32 O HETATM 2998 O HOH A 553 60.960 60.443 62.239 1.00 26.40 O HETATM 2999 O HOH A 555 72.994 45.287 37.349 1.00 53.53 O HETATM 3000 O HOH A 556 47.784 49.300 49.110 1.00 55.69 O HETATM 3001 O HOH A 557 71.939 41.598 36.817 1.00 32.31 O HETATM 3002 O HOH A 558 44.603 36.622 62.438 1.00100.00 O HETATM 3003 O HOH A 560 44.096 43.945 63.079 1.00 48.07 O HETATM 3004 O HOH A 561 44.762 40.956 64.258 1.00 36.07 O HETATM 3005 O HOH A 562 56.298 44.804 68.115 1.00 78.58 O HETATM 3006 O HOH A 563 57.916 38.240 70.792 1.00 66.18 O HETATM 3007 O HOH A 568 50.969 25.818 56.641 1.00 62.14 O HETATM 3008 O HOH A 571 39.537 52.153 57.542 1.00 61.09 O HETATM 3009 O HOH A 575 66.822 29.434 58.605 1.00 25.19 O HETATM 3010 O HOH A 576 84.044 33.947 42.674 1.00 81.32 O HETATM 3011 O HOH A 577 79.315 22.964 59.351 1.00 1.17 O HETATM 3012 O HOH A 578 72.098 38.530 27.974 1.00 41.92 O HETATM 3013 O HOH A 579 69.849 33.779 25.907 1.00 38.36 O HETATM 3014 O HOH A 580 64.531 43.191 31.087 1.00 43.73 O HETATM 3015 O HOH A 581 65.359 45.291 33.498 1.00 69.38 O HETATM 3016 O HOH A 582 62.898 44.304 32.520 1.00 65.86 O HETATM 3017 O HOH A 583 78.975 53.001 32.039 1.00 24.02 O HETATM 3018 O HOH A 584 77.216 42.069 41.243 1.00 17.47 O HETATM 3019 O HOH A 589 87.018 18.759 58.625 1.00 33.14 O HETATM 3020 O HOH A 590 69.241 23.380 67.544 1.00 42.68 O HETATM 3021 O HOH A 591 75.565 19.096 64.470 1.00 36.67 O HETATM 3022 O HOH A 592 70.962 38.394 36.524 1.00 10.14 O HETATM 3023 O HOH A 593 67.972 41.926 30.831 1.00 28.92 O HETATM 3024 O HOH A 596 59.338 19.516 52.859 1.00 20.91 O HETATM 3025 O HOH A 597 51.337 18.394 58.195 1.00 58.40 O HETATM 3026 O HOH A 600 64.088 25.827 61.491 1.00 65.28 O HETATM 3027 O HOH A 601 62.557 31.619 58.685 1.00 98.97 O HETATM 3028 O HOH A 602 78.367 34.972 64.473 1.00 72.17 O HETATM 3029 O HOH A 603 43.943 27.494 72.531 1.00 44.40 O HETATM 3030 O HOH A 604 49.602 22.128 72.376 1.00 54.90 O HETATM 3031 O HOH A 606 62.784 59.737 64.669 1.00 74.36 O HETATM 3032 O HOH A 607 60.901 53.075 51.167 1.00 72.08 O HETATM 3033 O HOH A 608 57.745 50.296 50.087 1.00100.00 O HETATM 3034 O HOH A 610 59.924 41.832 21.998 1.00100.00 O HETATM 3035 O HOH A 611 64.152 37.785 30.268 1.00100.00 O HETATM 3036 O HOH A 612 49.637 33.088 54.542 1.00 35.84 O HETATM 3037 O HOH A 613 46.830 34.156 52.784 1.00 51.32 O HETATM 3038 O HOH A 614 47.111 28.003 54.558 1.00 58.11 O HETATM 3039 O HOH A 616 42.161 39.718 53.584 1.00 70.43 O HETATM 3040 O HOH A 617 62.451 26.532 44.887 1.00 33.94 O HETATM 3041 O HOH A 618 83.365 31.388 43.263 1.00 64.77 O HETATM 3042 O HOH A 620 77.089 29.586 62.288 1.00 53.33 O HETATM 3043 O HOH A 621 73.049 19.184 66.066 1.00 50.95 O HETATM 3044 O HOH A 622 62.573 17.789 63.756 1.00 71.89 O HETATM 3045 O HOH A 623 61.358 25.978 73.715 1.00 92.39 O HETATM 3046 O HOH A 624 65.503 22.784 28.656 1.00 46.98 O HETATM 3047 O HOH A 625 71.823 20.624 29.722 1.00 59.20 O HETATM 3048 O HOH A 626 72.006 36.031 26.693 1.00 83.08 O HETATM 3049 O HOH A 627 83.292 38.647 25.481 1.00 88.88 O HETATM 3050 O HOH A 628 64.317 35.821 23.304 1.00 21.79 O HETATM 3051 O HOH A 629 69.136 34.137 37.065 1.00 97.37 O HETATM 3052 O HOH A 631 73.247 38.976 47.394 1.00 65.67 O HETATM 3053 O HOH A 636 81.278 15.109 61.371 1.00 84.77 O HETATM 3054 O HOH A 637 80.715 14.390 67.120 1.00 67.92 O HETATM 3055 O HOH A 638 47.204 37.811 75.681 1.00 60.46 O HETATM 3056 O HOH A 639 56.269 39.711 69.369 1.00 20.52 O HETATM 3057 O HOH A 640 60.865 36.169 68.020 1.00 58.70 O HETATM 3058 O HOH A 641 43.573 39.036 60.448 1.00 42.70 O HETATM 3059 O HOH A 642 60.392 63.310 62.946 1.00 60.01 O HETATM 3060 O HOH A 643 58.436 14.212 68.773 1.00 50.08 O HETATM 3061 O HOH A 644 74.385 10.881 36.245 1.00 38.80 O HETATM 3062 O HOH A 645 55.092 46.088 75.419 1.00 18.49 O HETATM 3063 O HOH A 646 50.608 15.600 70.175 1.00 68.22 O HETATM 3064 O HOH A 647 49.540 36.146 77.275 1.00 86.38 O HETATM 3065 O HOH A 649 47.151 53.998 69.139 1.00 29.39 O HETATM 3066 O HOH A 650 57.092 48.677 21.777 1.00 11.52 O HETATM 3067 O HOH A 655 85.168 35.929 47.442 1.00 46.79 O HETATM 3068 O HOH A 656 44.471 62.705 52.727 1.00 25.57 O HETATM 3069 O HOH A 657 60.350 38.650 66.809 1.00 74.38 O HETATM 3070 O HOH A 658 69.827 34.402 53.099 0.50 26.00 O CONECT 250 2918 CONECT 251 2918 CONECT 277 2917 CONECT 688 2919 CONECT 706 2919 CONECT 1010 2918 CONECT 1028 2918 CONECT 1045 2918 CONECT 1724 2916 CONECT 2916 1724 2921 2929 CONECT 2917 277 CONECT 2918 250 251 1010 1028 CONECT 2918 1045 3027 CONECT 2919 688 706 CONECT 2920 2921 2922 2923 2927 CONECT 2921 2916 2920 CONECT 2922 2920 CONECT 2923 2920 CONECT 2924 2925 2926 2927 2931 CONECT 2925 2924 CONECT 2926 2924 CONECT 2927 2920 2924 CONECT 2928 2929 2930 2931 2932 CONECT 2929 2916 2928 CONECT 2930 2928 CONECT 2931 2924 2928 CONECT 2932 2928 CONECT 3027 2918 MASTER 831 0 5 16 7 0 9 6 3067 3 28 28 END