HEADER TRANSFERASE/DNA 15-DEC-95 8ICS TITLE DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE TITLE 2 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 TITLE 3 (5 MILLIMOLAR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 MOL_ID: 2; SOURCE 3 MOL_ID: 3; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 5 02-AUG-23 8ICS 1 REMARK LINK REVDAT 4 30-MAR-11 8ICS 1 AUTHOR REVDAT 3 24-FEB-09 8ICS 1 VERSN REVDAT 2 01-APR-03 8ICS 1 JRNL REVDAT 1 15-NOV-96 8ICS 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT JRNL TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE JRNL TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 35 12762 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841119 JRNL DOI 10.1021/BI9529566 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 10241 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1670 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 289 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; 0.020 ; 3010 REMARK 3 BOND ANGLES (DEGREES) : 3.000 ; 3.000 ; 4069 REMARK 3 TORSION ANGLES (DEGREES) : 18.900; NULL ; 1800 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.015 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.006 ; 0.020 ; 395 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.000 ; 6.000 ; 3010 REMARK 3 NON-BONDED CONTACTS (A) : 0.024 ; 0.020 ; 191 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 616.6 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ICS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000179997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 8ICB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DCTP, REMARK 280 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.39600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.81150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.39600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.81150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA T 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA T 8 C2 N3 C4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 GLU A 247 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DC T 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 1 O3' DC T 1 C3' 0.116 REMARK 500 DA T 5 O3' DA T 5 C3' -0.039 REMARK 500 DA T 5 C6 DA T 5 N1 0.047 REMARK 500 DA T 5 C5 DA T 5 N7 -0.039 REMARK 500 DG T 6 O3' DG T 6 C3' -0.085 REMARK 500 DC P 2 O3' DC P 2 C3' -0.052 REMARK 500 DC P 2 C1' DC P 2 N1 0.157 REMARK 500 DC P 2 N1 DC P 2 C2 0.062 REMARK 500 DT P 3 N1 DT P 3 C2 0.089 REMARK 500 DT P 3 C2 DT P 3 N3 -0.056 REMARK 500 DT P 3 N3 DT P 3 C4 -0.061 REMARK 500 DG P 7 P DG P 7 O5' 0.080 REMARK 500 DG P 7 O5' DG P 7 C5' 0.119 REMARK 500 DG P 7 C5' DG P 7 C4' 0.069 REMARK 500 DG P 7 C4' DG P 7 C3' 0.064 REMARK 500 GLU A 26 CD GLU A 26 OE1 0.071 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.074 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.083 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.073 REMARK 500 GLU A 123 CD GLU A 123 OE1 0.072 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.083 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.073 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.069 REMARK 500 GLU A 203 CD GLU A 203 OE1 0.077 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.089 REMARK 500 TYR A 271 CB TYR A 271 CG -0.093 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.075 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.084 REMARK 500 GLU A 309 CD GLU A 309 OE2 0.087 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.095 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA T 2 C8 - N9 - C1' ANGL. DEV. = 12.4 DEGREES REMARK 500 DA T 2 C4 - N9 - C1' ANGL. DEV. = -11.7 DEGREES REMARK 500 DT T 3 P - O5' - C5' ANGL. DEV. = 9.7 DEGREES REMARK 500 DT T 4 N1 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -30.6 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 29.1 DEGREES REMARK 500 DA T 5 C5' - C4' - C3' ANGL. DEV. = 8.4 DEGREES REMARK 500 DA T 5 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA T 5 N1 - C6 - N6 ANGL. DEV. = 6.9 DEGREES REMARK 500 DA T 5 C8 - N9 - C1' ANGL. DEV. = 15.5 DEGREES REMARK 500 DA T 5 C4 - N9 - C1' ANGL. DEV. = -15.4 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG T 6 C8 - N9 - C1' ANGL. DEV. = 13.5 DEGREES REMARK 500 DG T 6 C4 - N9 - C1' ANGL. DEV. = -12.6 DEGREES REMARK 500 DT P 1 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT P 1 C6 - N1 - C1' ANGL. DEV. = -41.5 DEGREES REMARK 500 DT P 1 C2 - N1 - C1' ANGL. DEV. = 41.2 DEGREES REMARK 500 DC P 2 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC P 2 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC P 2 C6 - N1 - C1' ANGL. DEV. = -10.0 DEGREES REMARK 500 DC P 2 C2 - N1 - C1' ANGL. DEV. = 11.7 DEGREES REMARK 500 DT P 3 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DT P 3 N1 - C1' - C2' ANGL. DEV. = 11.6 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 13.5 DEGREES REMARK 500 DT P 3 C5 - C6 - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT P 3 N3 - C2 - O2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT P 3 C6 - N1 - C1' ANGL. DEV. = -34.5 DEGREES REMARK 500 DT P 3 C2 - N1 - C1' ANGL. DEV. = 33.3 DEGREES REMARK 500 DT P 3 C3' - O3' - P ANGL. DEV. = 10.3 DEGREES REMARK 500 DA P 4 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA P 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA P 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DA P 5 N1 - C6 - N6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA P 5 C8 - N9 - C1' ANGL. DEV. = -11.3 DEGREES REMARK 500 DA P 5 C4 - N9 - C1' ANGL. DEV. = 14.2 DEGREES REMARK 500 DT P 6 P - O5' - C5' ANGL. DEV. = -10.3 DEGREES REMARK 500 DT P 6 C6 - N1 - C1' ANGL. DEV. = -32.1 DEGREES REMARK 500 DT P 6 C2 - N1 - C1' ANGL. DEV. = 31.8 DEGREES REMARK 500 DG P 7 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG P 7 C8 - N9 - C1' ANGL. DEV. = 22.2 DEGREES REMARK 500 DG P 7 C4 - N9 - C1' ANGL. DEV. = -21.7 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO A 63 C - N - CD ANGL. DEV. = -21.3 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 78 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -21.10 -175.16 REMARK 500 GLN A 31 57.07 -143.69 REMARK 500 ALA A 32 57.74 -106.67 REMARK 500 PRO A 50 11.57 -65.59 REMARK 500 LYS A 60 -35.56 -38.95 REMARK 500 ASP A 91 116.14 -29.70 REMARK 500 CYS A 178 -159.90 -99.91 REMARK 500 ALA A 185 131.48 5.23 REMARK 500 SER A 199 24.93 -74.92 REMARK 500 SER A 202 -57.24 -16.97 REMARK 500 GLU A 203 -73.54 -83.96 REMARK 500 SER A 204 86.89 -25.50 REMARK 500 THR A 205 86.45 -44.94 REMARK 500 LYS A 206 -178.78 41.43 REMARK 500 GLN A 207 80.31 175.57 REMARK 500 HIS A 222 25.64 82.00 REMARK 500 THR A 233 -19.25 -158.42 REMARK 500 LYS A 244 -152.19 -35.86 REMARK 500 ASN A 245 36.20 -74.07 REMARK 500 ASP A 246 164.88 57.93 REMARK 500 GLU A 247 -19.80 107.73 REMARK 500 TYR A 265 -80.04 -37.18 REMARK 500 ASN A 279 -76.12 -61.44 REMARK 500 LYS A 289 16.93 -57.93 REMARK 500 GLU A 295 -46.11 -21.29 REMARK 500 THR A 304 6.45 -50.50 REMARK 500 VAL A 306 -168.94 -111.51 REMARK 500 ALA A 307 175.55 173.52 REMARK 500 GLU A 309 74.53 88.86 REMARK 500 PRO A 310 101.47 -45.39 REMARK 500 TYR A 322 -74.95 -39.37 REMARK 500 ILE A 323 4.06 -65.60 REMARK 500 ASP A 332 34.79 -98.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DCP A 338 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT P 6 OP1 REMARK 620 2 HOH P 601 O 87.5 REMARK 620 3 THR A 101 O 147.5 103.4 REMARK 620 4 VAL A 103 O 86.0 134.3 106.1 REMARK 620 5 ILE A 106 O 63.3 129.2 86.9 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 340 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG P 7 O3' REMARK 620 2 ASP A 192 OD1 89.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 339 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 DCP A 338 O1A 104.3 REMARK 620 3 DCP A 338 O1G 110.3 124.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 8ICS A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 8ICS T 1 8 PDB 8ICS 8ICS 1 8 DBREF 8ICS P 1 7 PDB 8ICS 8ICS 1 7 SEQRES 1 T 8 DC DA DT DT DA DG DA DA SEQRES 1 P 7 DT DC DT DA DA DT DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET MN A 339 1 HET MN A 340 1 HET NA A 341 1 HET NA A 342 1 HET DCP A 338 15 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 4 MN 2(MN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 8 DCP C9 H16 N3 O13 P3 FORMUL 9 HOH *132(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP1 DT P 6 NA NA A 341 1555 1555 2.48 LINK O3' DG P 7 MN MN A 340 1555 1555 2.35 LINK O HOH P 601 NA NA A 341 1555 1555 2.35 LINK O LEU A 62 NA NA A 342 1555 1555 2.36 LINK O THR A 101 NA NA A 341 1555 1555 2.16 LINK O VAL A 103 NA NA A 341 1555 1555 2.18 LINK O ILE A 106 NA NA A 341 1555 1555 2.53 LINK OD1 ASP A 190 MN MN A 339 1555 1555 2.69 LINK OD1 ASP A 192 MN MN A 340 1555 1555 2.67 LINK O1A DCP A 338 MN MN A 339 1555 1555 1.64 LINK O1G DCP A 338 MN MN A 339 1555 1555 2.61 CISPEP 1 GLY A 274 SER A 275 0 -0.79 SITE 1 AC1 3 ASP A 190 ASP A 192 DCP A 338 SITE 1 AC2 4 ASP A 190 ASP A 192 ASP A 256 DG P 7 SITE 1 AC3 7 THR A 101 ARG A 102 VAL A 103 SER A 104 SITE 2 AC3 7 ILE A 106 DT P 6 HOH P 601 SITE 1 AC4 2 LYS A 60 LEU A 62 SITE 1 AC5 12 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC5 12 SER A 188 GLY A 189 ASP A 190 ASP A 192 SITE 3 AC5 12 PHE A 272 MN A 339 HOH A 522 DG P 7 CRYST1 178.792 57.623 48.419 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020653 0.00000 TER 146 DA T 8 TER 291 DG P 7 TER 2915 GLU A 335 HETATM 2916 MN MN A 339 73.132 33.895 51.101 0.48 30.00 MN HETATM 2917 MN MN A 340 70.175 31.220 49.770 0.41 30.00 MN HETATM 2918 NA NA A 341 60.387 30.119 59.243 1.00 22.20 NA HETATM 2919 NA NA A 342 47.275 62.137 50.791 1.00 63.28 NA HETATM 2920 O3' DCP A 338 71.136 38.244 45.789 0.50 51.10 O HETATM 2921 C5' DCP A 338 70.283 36.124 47.421 0.50 76.40 C HETATM 2922 O5' DCP A 338 71.282 35.617 48.271 0.50 60.38 O HETATM 2923 PA DCP A 338 71.041 35.653 49.841 0.50 65.47 P HETATM 2924 O1A DCP A 338 71.747 34.519 50.477 0.50 78.12 O HETATM 2925 O2A DCP A 338 69.597 35.819 50.134 0.50 76.15 O HETATM 2926 O3A DCP A 338 71.809 36.999 50.200 0.50 69.79 O HETATM 2927 PB DCP A 338 73.365 37.366 50.515 0.50 81.47 P HETATM 2928 O1B DCP A 338 73.570 38.772 50.098 0.50 88.76 O HETATM 2929 O2B DCP A 338 74.285 36.350 49.937 0.50100.00 O HETATM 2930 O3B DCP A 338 73.410 37.241 52.106 0.50 79.02 O HETATM 2931 PG DCP A 338 74.193 36.211 53.087 0.50 41.87 P HETATM 2932 O1G DCP A 338 75.003 35.320 52.237 0.50 46.07 O HETATM 2933 O2G DCP A 338 74.897 36.955 54.159 0.50 82.95 O HETATM 2934 O3G DCP A 338 72.957 35.413 53.661 0.50 45.49 O HETATM 2935 O HOH T 517 58.644 13.977 51.449 1.00 73.26 O HETATM 2936 O HOH T 526 54.019 30.251 42.952 1.00 31.36 O HETATM 2937 O HOH T 527 59.993 23.029 48.225 1.00 21.77 O HETATM 2938 O HOH T 537 61.822 25.407 36.008 1.00 53.71 O HETATM 2939 O HOH T 545 60.955 15.968 42.551 1.00 72.59 O HETATM 2940 O HOH T 546 62.327 15.794 46.612 1.00 72.45 O HETATM 2941 O HOH T 547 55.489 15.933 54.256 1.00 34.21 O HETATM 2942 O HOH T 564 55.491 22.420 50.913 1.00 23.77 O HETATM 2943 O HOH T 594 60.305 25.285 48.019 1.00 63.77 O HETATM 2944 O HOH T 595 54.981 24.603 52.398 1.00 36.70 O HETATM 2945 O HOH T 634 44.943 20.180 49.319 1.00 80.66 O HETATM 2946 O HOH T 651 48.838 21.511 50.669 1.00 80.67 O HETATM 2947 O HOH T 652 52.181 18.949 44.051 1.00 57.93 O HETATM 2948 O HOH P 510 53.641 32.467 53.653 1.00 30.17 O HETATM 2949 O HOH P 511 49.414 25.639 50.404 1.00 54.35 O HETATM 2950 O HOH P 525 52.716 27.107 41.635 1.00 40.12 O HETATM 2951 O HOH P 534 65.887 32.665 55.936 1.00 71.07 O HETATM 2952 O HOH P 565 58.968 26.039 52.184 1.00 32.12 O HETATM 2953 O HOH P 566 64.261 35.282 56.267 1.00 76.76 O HETATM 2954 O HOH P 567 60.691 32.855 54.107 1.00 80.05 O HETATM 2955 O HOH P 568 51.603 25.193 56.524 1.00 38.48 O HETATM 2956 O HOH P 569 46.464 27.634 52.245 1.00 50.27 O HETATM 2957 O HOH P 570 47.089 31.190 43.681 1.00 23.54 O HETATM 2958 O HOH P 575 66.747 28.944 58.042 1.00 43.57 O HETATM 2959 O HOH P 599 48.351 28.520 41.130 1.00 90.10 O HETATM 2960 O HOH P 601 61.894 31.536 58.124 1.00 93.71 O HETATM 2961 O HOH P 613 46.669 33.696 53.095 1.00 48.47 O HETATM 2962 O HOH P 615 42.872 31.093 49.097 1.00 51.95 O HETATM 2963 O HOH P 635 44.440 23.802 47.589 1.00 68.46 O HETATM 2964 O HOH P 648 57.238 32.518 54.485 1.00 76.86 O HETATM 2965 O HOH A 501 84.800 39.657 28.409 1.00 84.31 O HETATM 2966 O HOH A 502 77.121 32.253 50.430 1.00 9.41 O HETATM 2967 O HOH A 503 73.847 28.203 60.196 1.00 23.92 O HETATM 2968 O HOH A 505 66.173 31.061 60.575 1.00 8.09 O HETATM 2969 O HOH A 506 53.707 48.649 48.626 1.00 41.63 O HETATM 2970 O HOH A 507 87.431 39.850 52.846 1.00 32.95 O HETATM 2971 O HOH A 508 75.224 34.941 31.627 1.00 23.48 O HETATM 2972 O HOH A 509 66.574 11.750 52.470 1.00 66.89 O HETATM 2973 O HOH A 512 57.397 21.287 52.846 1.00 20.39 O HETATM 2974 O HOH A 513 60.260 22.110 51.085 1.00 29.28 O HETATM 2975 O HOH A 514 66.428 28.703 62.011 1.00 49.26 O HETATM 2976 O HOH A 515 60.597 13.431 57.495 1.00 25.97 O HETATM 2977 O HOH A 516 63.238 12.788 57.479 1.00 61.28 O HETATM 2978 O HOH A 518 74.222 14.916 61.303 1.00 70.45 O HETATM 2979 O HOH A 519 69.517 12.649 52.696 1.00100.00 O HETATM 2980 O HOH A 520 78.503 14.838 58.333 1.00 67.14 O HETATM 2981 O HOH A 521 80.362 25.292 58.924 1.00 16.69 O HETATM 2982 O HOH A 522 77.560 35.497 51.723 1.00 66.24 O HETATM 2983 O HOH A 523 72.216 32.571 59.359 1.00 18.16 O HETATM 2984 O HOH A 524 42.108 49.257 64.529 1.00 50.82 O HETATM 2985 O HOH A 528 72.546 42.563 51.990 1.00 59.35 O HETATM 2986 O HOH A 529 74.168 42.801 54.664 1.00 85.09 O HETATM 2987 O HOH A 530 81.947 35.725 53.365 1.00 46.85 O HETATM 2988 O HOH A 531 73.891 33.924 25.309 1.00 60.65 O HETATM 2989 O HOH A 533 73.029 28.808 57.815 1.00 32.83 O HETATM 2990 O HOH A 535 63.648 29.844 42.701 1.00 25.99 O HETATM 2991 O HOH A 536 73.235 35.630 29.487 1.00 37.66 O HETATM 2992 O HOH A 538 66.932 26.763 38.845 1.00 40.65 O HETATM 2993 O HOH A 539 56.549 24.044 54.688 1.00 15.50 O HETATM 2994 O HOH A 541 70.465 11.993 41.484 1.00 42.43 O HETATM 2995 O HOH A 542 73.533 12.425 53.178 1.00 62.71 O HETATM 2996 O HOH A 543 71.058 13.596 59.320 1.00 42.39 O HETATM 2997 O HOH A 544 67.122 13.522 55.851 1.00 45.69 O HETATM 2998 O HOH A 550 78.242 15.182 33.112 1.00 48.98 O HETATM 2999 O HOH A 551 82.855 16.670 29.277 1.00 44.14 O HETATM 3000 O HOH A 552 86.771 15.221 35.557 1.00 33.18 O HETATM 3001 O HOH A 553 61.460 60.719 62.660 1.00 54.29 O HETATM 3002 O HOH A 555 72.781 45.223 37.079 1.00 33.92 O HETATM 3003 O HOH A 556 47.897 49.751 49.360 1.00 84.12 O HETATM 3004 O HOH A 557 72.071 42.072 36.992 1.00 44.22 O HETATM 3005 O HOH A 558 44.983 36.063 62.215 1.00100.00 O HETATM 3006 O HOH A 560 44.629 44.771 63.413 1.00 65.63 O HETATM 3007 O HOH A 561 44.491 40.924 64.931 1.00 65.24 O HETATM 3008 O HOH A 562 56.281 44.981 67.698 1.00 51.43 O HETATM 3009 O HOH A 563 57.741 37.906 70.016 1.00 82.98 O HETATM 3010 O HOH A 571 39.316 51.100 58.359 1.00 84.82 O HETATM 3011 O HOH A 576 84.012 33.845 42.198 1.00 59.37 O HETATM 3012 O HOH A 577 79.047 22.745 59.173 1.00 3.19 O HETATM 3013 O HOH A 578 72.004 38.701 28.034 1.00 25.29 O HETATM 3014 O HOH A 579 69.144 33.661 26.424 1.00 20.17 O HETATM 3015 O HOH A 580 65.252 42.947 31.134 1.00 60.06 O HETATM 3016 O HOH A 581 65.851 45.173 33.591 1.00 80.87 O HETATM 3017 O HOH A 582 62.753 43.970 32.130 1.00 58.85 O HETATM 3018 O HOH A 583 78.962 52.987 31.957 1.00 37.28 O HETATM 3019 O HOH A 584 77.261 41.881 41.173 1.00 33.26 O HETATM 3020 O HOH A 585 65.335 30.453 39.445 1.00 54.64 O HETATM 3021 O HOH A 589 87.423 18.996 58.355 1.00 51.05 O HETATM 3022 O HOH A 590 69.117 23.382 66.825 1.00 51.59 O HETATM 3023 O HOH A 591 75.762 20.184 64.845 1.00 33.14 O HETATM 3024 O HOH A 592 71.199 38.833 36.578 1.00 39.87 O HETATM 3025 O HOH A 593 68.107 42.340 30.823 1.00 15.22 O HETATM 3026 O HOH A 596 59.063 19.764 53.202 1.00 38.22 O HETATM 3027 O HOH A 597 51.832 18.851 58.205 1.00 72.95 O HETATM 3028 O HOH A 600 64.024 26.007 61.234 1.00 78.70 O HETATM 3029 O HOH A 602 77.990 34.284 64.555 1.00 55.58 O HETATM 3030 O HOH A 603 44.148 27.271 73.179 1.00 48.82 O HETATM 3031 O HOH A 604 50.218 22.074 72.803 1.00 59.18 O HETATM 3032 O HOH A 606 62.773 59.652 65.343 1.00 64.99 O HETATM 3033 O HOH A 607 61.086 54.283 50.452 1.00 65.54 O HETATM 3034 O HOH A 608 56.970 50.310 49.687 1.00 85.38 O HETATM 3035 O HOH A 610 60.310 41.870 22.481 1.00100.00 O HETATM 3036 O HOH A 611 65.123 37.725 30.227 1.00 82.03 O HETATM 3037 O HOH A 612 49.447 32.986 54.907 1.00 39.81 O HETATM 3038 O HOH A 614 47.080 28.049 54.523 1.00 84.43 O HETATM 3039 O HOH A 616 43.304 39.611 52.938 1.00 81.79 O HETATM 3040 O HOH A 617 62.518 26.863 44.617 1.00 56.47 O HETATM 3041 O HOH A 618 83.271 30.947 43.304 1.00 38.30 O HETATM 3042 O HOH A 620 77.087 29.156 62.499 1.00 50.33 O HETATM 3043 O HOH A 621 72.813 19.552 66.073 1.00 73.07 O HETATM 3044 O HOH A 622 62.880 17.181 63.445 1.00 37.91 O HETATM 3045 O HOH A 623 61.679 25.206 74.058 1.00 78.74 O HETATM 3046 O HOH A 624 65.629 23.180 29.066 1.00 39.95 O HETATM 3047 O HOH A 625 71.526 20.434 29.758 1.00 91.49 O HETATM 3048 O HOH A 626 70.907 35.875 26.453 1.00100.00 O HETATM 3049 O HOH A 627 82.488 38.742 24.853 1.00100.00 O HETATM 3050 O HOH A 628 64.224 36.236 22.937 1.00 49.02 O HETATM 3051 O HOH A 629 69.283 33.564 36.120 1.00 84.28 O HETATM 3052 O HOH A 636 81.408 14.539 61.125 1.00100.00 O HETATM 3053 O HOH A 637 80.531 14.450 67.258 1.00 76.73 O HETATM 3054 O HOH A 638 48.042 37.254 76.363 1.00 52.66 O HETATM 3055 O HOH A 639 56.520 39.894 70.148 1.00 47.79 O HETATM 3056 O HOH A 640 60.862 36.951 66.880 1.00 58.51 O HETATM 3057 O HOH A 641 43.641 38.345 59.885 1.00 62.89 O HETATM 3058 O HOH A 642 60.083 62.788 63.123 1.00 58.48 O HETATM 3059 O HOH A 643 57.787 14.483 69.025 1.00 57.04 O HETATM 3060 O HOH A 644 74.492 10.865 36.294 1.00 34.77 O HETATM 3061 O HOH A 645 55.089 46.338 75.132 1.00 29.12 O HETATM 3062 O HOH A 646 50.335 15.752 71.316 1.00 65.34 O HETATM 3063 O HOH A 647 50.110 35.874 77.331 1.00 83.88 O HETATM 3064 O HOH A 649 47.118 54.017 69.123 1.00 26.40 O HETATM 3065 O HOH A 650 57.141 48.446 22.515 1.00 19.38 O HETATM 3066 O HOH A 653 65.803 34.819 43.099 1.00 63.89 O CONECT 250 2918 CONECT 277 2917 CONECT 706 2919 CONECT 1010 2918 CONECT 1028 2918 CONECT 1045 2918 CONECT 1724 2916 CONECT 1740 2917 CONECT 2916 1724 2924 2932 CONECT 2917 277 1740 CONECT 2918 250 1010 1028 1045 CONECT 2918 2960 CONECT 2919 706 CONECT 2921 2922 CONECT 2922 2921 2923 CONECT 2923 2922 2924 2925 2926 CONECT 2924 2916 2923 CONECT 2925 2923 CONECT 2926 2923 2927 CONECT 2927 2926 2928 2929 2930 CONECT 2928 2927 CONECT 2929 2927 CONECT 2930 2927 2931 CONECT 2931 2930 2932 2933 2934 CONECT 2932 2916 2931 CONECT 2933 2931 CONECT 2934 2931 CONECT 2960 2918 MASTER 831 0 5 16 7 0 8 6 3063 3 28 28 END