HEADER TRANSFERASE/DNA 15-DEC-95 8ICY TITLE DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- TITLE 2 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*TP*GP*T)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA), KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 3 02-AUG-23 8ICY 1 REMARK LINK REVDAT 2 24-FEB-09 8ICY 1 VERSN REVDAT 1 15-DEC-95 8ICY 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT JRNL TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE JRNL TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA JRNL REF BIOCHEMISTRY V. 35 12762 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841119 JRNL DOI 10.1021/BI9529566 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 9053 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1680 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 309 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.019 ; 0.020 ; 2997 REMARK 3 BOND ANGLES (DEGREES) : 3.100 ; 3.000 ; 4052 REMARK 3 TORSION ANGLES (DEGREES) : 19.000; NULL ; 1803 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.016 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.006 ; 0.020 ; 395 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 5.600 ; 6.000 ; 3004 REMARK 3 NON-BONDED CONTACTS (A) : 0.028 ; 0.020 ; 163 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 428.3 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ICY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000180003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9053 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 5.90000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 14.1000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 8ICB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DTTP, REMARK 280 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.89600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.80850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.89600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.80850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 REMARK 400 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 REMARK 400 AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA T 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA T 8 C2 N3 C4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 1 O3' DC T 1 C3' 0.119 REMARK 500 DA T 5 O3' DA T 5 C3' -0.074 REMARK 500 DA T 5 C5 DA T 5 N7 -0.038 REMARK 500 DG T 6 O3' DG T 6 C3' -0.053 REMARK 500 DT P 1 O3' DT P 1 C3' -0.048 REMARK 500 DT P 1 C5 DT P 1 C7 0.045 REMARK 500 DC P 2 C1' DC P 2 N1 0.085 REMARK 500 DT P 3 N1 DT P 3 C2 0.065 REMARK 500 DA P 5 O3' DA P 5 C3' -0.043 REMARK 500 DA P 5 N9 DA P 5 C4 0.043 REMARK 500 DT P 6 O3' DT P 6 C3' -0.049 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.075 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.083 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.074 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.073 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.075 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.085 REMARK 500 GLU A 153 CD GLU A 153 OE2 0.066 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.083 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.076 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.081 REMARK 500 GLU A 247 CD GLU A 247 OE1 0.076 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.075 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.083 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.077 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC T 1 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC T 1 C6 - N1 - C1' ANGL. DEV. = -16.0 DEGREES REMARK 500 DC T 1 C2 - N1 - C1' ANGL. DEV. = 13.6 DEGREES REMARK 500 DC T 1 C3' - O3' - P ANGL. DEV. = 14.8 DEGREES REMARK 500 DA T 2 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT T 3 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT T 3 C3' - O3' - P ANGL. DEV. = -8.1 DEGREES REMARK 500 DT T 4 C1' - O4' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -24.7 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 24.0 DEGREES REMARK 500 DA T 5 P - O5' - C5' ANGL. DEV. = -15.0 DEGREES REMARK 500 DA T 5 N1 - C6 - N6 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 DG T 6 C8 - N9 - C1' ANGL. DEV. = 22.3 DEGREES REMARK 500 DG T 6 C4 - N9 - C1' ANGL. DEV. = -22.1 DEGREES REMARK 500 DA T 7 C8 - N9 - C1' ANGL. DEV. = 19.1 DEGREES REMARK 500 DA T 7 C4 - N9 - C1' ANGL. DEV. = -21.0 DEGREES REMARK 500 DC P 2 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC P 2 C6 - N1 - C1' ANGL. DEV. = -28.5 DEGREES REMARK 500 DC P 2 C2 - N1 - C1' ANGL. DEV. = 29.5 DEGREES REMARK 500 DT P 3 O5' - C5' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 9.5 DEGREES REMARK 500 DT P 3 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT P 3 C6 - N1 - C1' ANGL. DEV. = -21.6 DEGREES REMARK 500 DT P 3 C2 - N1 - C1' ANGL. DEV. = 22.4 DEGREES REMARK 500 DT P 3 C3' - O3' - P ANGL. DEV. = 13.4 DEGREES REMARK 500 DA P 4 C4 - N9 - C1' ANGL. DEV. = 11.5 DEGREES REMARK 500 DA P 5 C8 - N9 - C1' ANGL. DEV. = -16.9 DEGREES REMARK 500 DA P 5 C4 - N9 - C1' ANGL. DEV. = 17.7 DEGREES REMARK 500 DT P 6 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT P 6 C6 - N1 - C1' ANGL. DEV. = -13.7 DEGREES REMARK 500 DT P 6 C2 - N1 - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 DG P 7 P - O5' - C5' ANGL. DEV. = -13.5 DEGREES REMARK 500 DG P 7 C4' - C3' - O3' ANGL. DEV. = 12.0 DEGREES REMARK 500 DG P 7 C4' - C3' - C2' ANGL. DEV. = 5.9 DEGREES REMARK 500 DG P 7 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DG P 7 C8 - N9 - C1' ANGL. DEV. = 12.0 DEGREES REMARK 500 DG P 7 C4 - N9 - C1' ANGL. DEV. = -13.3 DEGREES REMARK 500 DG P 7 C3' - O3' - P ANGL. DEV. = 10.3 DEGREES REMARK 500 DT P 8 C3' - C2' - C1' ANGL. DEV. = -8.2 DEGREES REMARK 500 DT P 8 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT P 8 C6 - N1 - C1' ANGL. DEV. = -29.4 DEGREES REMARK 500 DT P 8 C2 - N1 - C1' ANGL. DEV. = 27.8 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR A 49 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 83 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 ASN A 98 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -20.60 -149.99 REMARK 500 ASN A 28 -78.27 -81.91 REMARK 500 GLN A 31 44.84 -94.90 REMARK 500 ALA A 32 59.25 -97.82 REMARK 500 ILE A 33 -32.39 -38.84 REMARK 500 TYR A 49 106.33 -50.40 REMARK 500 PRO A 50 0.84 -62.76 REMARK 500 ALA A 78 -82.05 -42.46 REMARK 500 LYS A 81 -150.22 -143.44 REMARK 500 ASP A 91 110.90 -38.98 REMARK 500 CYS A 178 -157.71 -98.60 REMARK 500 ARG A 183 38.06 -92.59 REMARK 500 ALA A 185 108.90 -12.36 REMARK 500 ASP A 192 79.34 -107.62 REMARK 500 SER A 202 -41.56 -26.12 REMARK 500 GLU A 203 -75.80 -92.96 REMARK 500 SER A 204 81.71 -19.04 REMARK 500 THR A 205 45.43 -27.19 REMARK 500 LYS A 206 -175.69 67.64 REMARK 500 GLN A 207 76.25 176.89 REMARK 500 HIS A 222 36.51 97.53 REMARK 500 SER A 229 117.20 -167.53 REMARK 500 THR A 233 -13.94 -153.51 REMARK 500 PRO A 242 100.00 -51.11 REMARK 500 SER A 243 105.14 -54.12 REMARK 500 LYS A 244 -148.72 -36.05 REMARK 500 ASP A 246 171.13 32.47 REMARK 500 GLU A 247 -51.55 114.04 REMARK 500 LYS A 262 -30.25 -37.39 REMARK 500 GLN A 264 7.50 -155.61 REMARK 500 TYR A 265 -76.98 -55.86 REMARK 500 TYR A 271 -72.56 -48.98 REMARK 500 LYS A 289 17.86 -68.18 REMARK 500 THR A 304 0.40 -62.88 REMARK 500 GLU A 309 60.45 82.95 REMARK 500 PRO A 310 89.40 -37.54 REMARK 500 PHE A 320 -71.15 -58.20 REMARK 500 GLN A 324 87.57 50.42 REMARK 500 SER A 334 -29.61 -39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TTP A 338 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT P 6 OP1 REMARK 620 2 THR A 101 O 157.3 REMARK 620 3 VAL A 103 O 102.4 91.9 REMARK 620 4 ILE A 106 O 101.3 87.5 116.3 REMARK 620 5 HOH A 601 O 91.8 70.2 91.4 145.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 339 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TTP A 338 O1G REMARK 620 2 TTP A 338 O1A 122.1 REMARK 620 3 TTP A 338 O2B 68.1 86.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 8ICY A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 8ICY T 1 8 PDB 8ICY 8ICY 1 8 DBREF 8ICY P 1 8 PDB 8ICY 8ICY 1 8 SEQRES 1 T 8 DC DA DT DT DA DG DA DA SEQRES 1 P 8 DT DC DT DA DA DT DG DT SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET MN A 339 1 HET NA A 341 1 HET NA A 342 1 HET TTP A 338 20 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 4 MN MN 2+ FORMUL 5 NA 2(NA 1+) FORMUL 7 TTP C10 H17 N2 O14 P3 FORMUL 8 HOH *133(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP1 DT P 6 NA NA A 341 1555 1555 2.07 LINK O LEU A 62 NA NA A 342 3547 1555 2.18 LINK O THR A 101 NA NA A 341 1555 1555 2.48 LINK O VAL A 103 NA NA A 341 1555 1555 2.53 LINK O ILE A 106 NA NA A 341 1555 1555 2.17 LINK O1G TTP A 338 MN MN A 339 1555 1555 2.11 LINK O1A TTP A 338 MN MN A 339 1555 1555 2.66 LINK O2B TTP A 338 MN MN A 339 1555 1555 2.53 LINK NA NA A 341 O HOH A 601 1555 1555 1.80 CISPEP 1 GLY A 274 SER A 275 0 -0.50 SITE 1 AC1 4 ASP A 190 ASP A 192 TTP A 338 DT P 8 SITE 1 AC2 6 THR A 101 VAL A 103 GLY A 105 ILE A 106 SITE 2 AC2 6 HOH A 601 DT P 6 SITE 1 AC3 4 LYS A 60 LYS A 61 LEU A 62 VAL A 65 SITE 1 AC4 15 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC4 15 SER A 188 GLY A 189 ASP A 190 ASP A 192 SITE 3 AC4 15 PHE A 272 ASP A 276 MN A 339 HOH A 522 SITE 4 AC4 15 HOH A 631 DG P 7 DT P 8 CRYST1 179.792 57.617 48.188 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020752 0.00000 TER 146 DA T 8 TER 311 DT P 8 TER 2935 GLU A 335 HETATM 2936 MN MN A 339 74.222 34.323 51.082 1.00 30.00 MN HETATM 2937 NA NA A 341 59.873 30.219 58.730 1.00 8.59 NA HETATM 2938 NA NA A 342 42.570 33.742 44.943 1.00 50.11 NA HETATM 2939 PA TTP A 338 71.183 36.096 50.167 0.50 75.86 P HETATM 2940 O1A TTP A 338 71.634 34.877 50.854 0.50 73.35 O HETATM 2941 O2A TTP A 338 69.738 36.502 50.294 0.50 76.85 O HETATM 2942 O3A TTP A 338 72.175 37.342 50.559 0.50 79.55 O HETATM 2943 PB TTP A 338 73.844 37.637 50.622 0.50 80.26 P HETATM 2944 O1B TTP A 338 74.102 39.021 50.157 0.50 81.39 O HETATM 2945 O2B TTP A 338 74.642 36.559 49.972 0.50 83.74 O HETATM 2946 O3B TTP A 338 74.085 37.575 52.193 0.50 74.23 O HETATM 2947 PG TTP A 338 74.862 36.491 53.118 0.50 67.59 P HETATM 2948 O1G TTP A 338 75.531 35.530 52.213 0.50 65.04 O HETATM 2949 O2G TTP A 338 75.684 37.169 54.150 0.50 68.16 O HETATM 2950 O3G TTP A 338 73.621 35.805 53.788 0.50 66.86 O HETATM 2951 O5' TTP A 338 71.506 36.041 48.621 0.50 74.89 O HETATM 2952 C5' TTP A 338 70.951 37.223 48.143 0.50 76.48 C HETATM 2953 C4' TTP A 338 71.500 37.549 46.788 0.50 77.12 C HETATM 2954 O4' TTP A 338 70.616 38.459 46.110 0.50 78.85 O HETATM 2955 C3' TTP A 338 72.820 38.206 46.828 0.50 74.98 C HETATM 2956 O3' TTP A 338 73.021 37.871 45.524 0.50 73.35 O HETATM 2957 C2' TTP A 338 72.454 39.681 46.781 0.50 75.16 C HETATM 2958 C1' TTP A 338 71.261 39.680 45.879 0.50 76.73 C HETATM 2959 O HOH T 512 57.911 21.036 52.196 1.00 1.00 O HETATM 2960 O HOH T 517 58.826 14.303 51.090 1.00 48.90 O HETATM 2961 O HOH T 525 53.305 27.480 41.406 1.00 36.92 O HETATM 2962 O HOH T 526 53.307 31.125 42.914 1.00 32.23 O HETATM 2963 O HOH T 527 60.487 22.715 48.863 1.00 43.82 O HETATM 2964 O HOH T 535 63.466 30.696 41.879 1.00 26.72 O HETATM 2965 O HOH T 537 61.804 24.744 36.153 1.00 46.71 O HETATM 2966 O HOH T 546 60.157 16.154 48.412 1.00 59.02 O HETATM 2967 O HOH T 547 54.420 15.912 55.223 1.00 24.66 O HETATM 2968 O HOH T 564 55.685 22.617 51.148 1.00 29.24 O HETATM 2969 O HOH T 585 66.060 30.658 39.618 1.00 61.37 O HETATM 2970 O HOH T 594 61.365 25.401 47.506 1.00 32.17 O HETATM 2971 O HOH T 634 45.333 21.349 50.248 1.00 99.13 O HETATM 2972 O HOH T 651 48.610 22.081 50.963 1.00 44.77 O HETATM 2973 O HOH T 652 52.506 19.460 43.740 1.00 26.43 O HETATM 2974 O HOH P 510 54.108 32.422 54.552 1.00 36.13 O HETATM 2975 O HOH P 511 50.172 25.772 50.619 1.00 30.96 O HETATM 2976 O HOH P 524 48.839 21.896 32.579 1.00 26.22 O HETATM 2977 O HOH P 534 66.126 32.187 55.813 1.00 86.96 O HETATM 2978 O HOH P 566 64.059 33.856 53.757 1.00 40.44 O HETATM 2979 O HOH P 567 60.765 32.183 53.231 1.00 22.52 O HETATM 2980 O HOH P 568 52.099 25.018 56.406 1.00 49.81 O HETATM 2981 O HOH P 569 47.079 26.951 52.415 1.00 50.23 O HETATM 2982 O HOH P 570 46.581 31.651 42.769 1.00 54.09 O HETATM 2983 O HOH P 571 50.167 22.974 37.875 1.00 29.69 O HETATM 2984 O HOH P 595 53.426 25.328 51.604 1.00 90.53 O HETATM 2985 O HOH P 599 47.673 28.936 40.725 1.00 49.26 O HETATM 2986 O HOH P 612 50.671 33.823 54.375 1.00 55.80 O HETATM 2987 O HOH P 613 47.138 34.207 53.230 1.00 67.17 O HETATM 2988 O HOH P 614 47.138 29.587 54.153 1.00 69.05 O HETATM 2989 O HOH P 615 43.380 31.646 48.757 1.00 48.32 O HETATM 2990 O HOH P 635 45.132 23.875 47.384 1.00 62.84 O HETATM 2991 O HOH P 648 56.739 32.838 54.181 1.00 45.44 O HETATM 2992 O HOH P 653 66.743 34.933 42.604 1.00 25.21 O HETATM 2993 O HOH A 501 85.201 38.842 28.361 1.00 91.79 O HETATM 2994 O HOH A 502 77.205 32.229 49.907 1.00 1.00 O HETATM 2995 O HOH A 503 74.528 28.934 60.146 1.00 3.20 O HETATM 2996 O HOH A 505 66.578 31.684 60.716 1.00 7.41 O HETATM 2997 O HOH A 506 53.426 48.458 48.651 1.00 22.39 O HETATM 2998 O HOH A 507 87.883 39.756 52.792 1.00 29.37 O HETATM 2999 O HOH A 508 75.034 35.945 32.009 1.00 27.15 O HETATM 3000 O HOH A 509 66.565 12.873 51.800 1.00 44.04 O HETATM 3001 O HOH A 513 60.505 22.253 51.316 1.00 61.64 O HETATM 3002 O HOH A 514 66.786 29.066 62.434 1.00 4.48 O HETATM 3003 O HOH A 515 59.500 13.853 57.142 1.00 26.31 O HETATM 3004 O HOH A 516 62.745 12.450 59.193 1.00 61.02 O HETATM 3005 O HOH A 518 74.580 15.951 62.389 1.00 61.31 O HETATM 3006 O HOH A 519 70.067 12.386 52.622 1.00 40.84 O HETATM 3007 O HOH A 520 78.542 14.628 57.744 1.00 23.18 O HETATM 3008 O HOH A 521 80.775 25.974 58.451 1.00 13.49 O HETATM 3009 O HOH A 522 77.325 34.249 51.480 1.00 37.50 O HETATM 3010 O HOH A 523 72.474 31.583 59.369 1.00 29.79 O HETATM 3011 O HOH A 528 73.335 42.338 52.099 1.00 66.50 O HETATM 3012 O HOH A 529 75.858 42.540 54.182 1.00 68.94 O HETATM 3013 O HOH A 530 82.636 35.588 52.836 1.00 23.09 O HETATM 3014 O HOH A 531 73.902 33.840 24.360 1.00 58.33 O HETATM 3015 O HOH A 533 73.109 28.815 57.367 1.00 14.39 O HETATM 3016 O HOH A 536 73.506 36.243 29.429 1.00 46.39 O HETATM 3017 O HOH A 538 67.243 26.828 39.048 1.00 20.31 O HETATM 3018 O HOH A 539 56.750 24.090 54.315 1.00 15.96 O HETATM 3019 O HOH A 541 70.188 13.023 41.629 1.00 49.11 O HETATM 3020 O HOH A 542 73.766 11.574 52.824 1.00 26.93 O HETATM 3021 O HOH A 543 72.046 13.838 59.729 1.00 34.33 O HETATM 3022 O HOH A 544 67.055 14.047 55.865 1.00 62.03 O HETATM 3023 O HOH A 545 62.532 14.429 40.218 1.00 41.05 O HETATM 3024 O HOH A 550 78.102 15.743 33.064 1.00 43.35 O HETATM 3025 O HOH A 551 83.174 16.064 28.990 1.00 71.32 O HETATM 3026 O HOH A 552 87.256 15.553 36.110 1.00 68.25 O HETATM 3027 O HOH A 553 61.796 60.741 62.374 1.00 15.03 O HETATM 3028 O HOH A 555 72.647 44.591 36.833 1.00 22.98 O HETATM 3029 O HOH A 556 48.383 49.532 49.672 1.00 27.19 O HETATM 3030 O HOH A 557 72.247 42.065 36.823 1.00 17.53 O HETATM 3031 O HOH A 558 44.365 35.904 61.596 1.00 37.73 O HETATM 3032 O HOH A 560 44.795 45.587 62.785 1.00 92.63 O HETATM 3033 O HOH A 561 45.259 40.900 64.447 1.00 44.94 O HETATM 3034 O HOH A 562 56.195 44.646 67.213 1.00 52.95 O HETATM 3035 O HOH A 563 57.410 37.945 69.972 1.00 45.83 O HETATM 3036 O HOH A 565 59.513 25.920 51.925 1.00 7.70 O HETATM 3037 O HOH A 575 66.869 29.706 57.913 1.00 59.09 O HETATM 3038 O HOH A 576 83.958 34.163 42.827 1.00 64.43 O HETATM 3039 O HOH A 577 79.969 23.183 59.272 1.00 1.00 O HETATM 3040 O HOH A 578 72.085 38.996 27.611 1.00 14.91 O HETATM 3041 O HOH A 579 69.890 33.527 25.987 1.00 65.09 O HETATM 3042 O HOH A 580 65.442 42.660 32.105 1.00 42.45 O HETATM 3043 O HOH A 581 65.396 45.927 34.282 1.00 74.60 O HETATM 3044 O HOH A 582 62.145 43.456 32.561 1.00100.00 O HETATM 3045 O HOH A 583 78.648 53.227 32.162 1.00 59.69 O HETATM 3046 O HOH A 584 77.351 41.714 41.896 1.00 52.76 O HETATM 3047 O HOH A 589 87.515 19.305 57.943 1.00 50.06 O HETATM 3048 O HOH A 590 69.369 23.719 66.069 1.00 36.60 O HETATM 3049 O HOH A 591 75.127 20.438 64.811 1.00 21.21 O HETATM 3050 O HOH A 592 71.533 38.796 36.328 1.00 13.93 O HETATM 3051 O HOH A 593 68.693 42.335 30.353 1.00 29.44 O HETATM 3052 O HOH A 596 59.385 19.313 53.040 1.00 1.00 O HETATM 3053 O HOH A 597 52.359 17.690 58.049 1.00 51.67 O HETATM 3054 O HOH A 600 64.918 26.461 60.754 1.00 79.87 O HETATM 3055 O HOH A 601 61.432 31.124 58.704 1.00 44.98 O HETATM 3056 O HOH A 602 78.469 34.348 64.272 1.00 56.81 O HETATM 3057 O HOH A 603 44.359 28.385 72.348 1.00 39.05 O HETATM 3058 O HOH A 604 49.730 21.113 72.268 1.00 48.62 O HETATM 3059 O HOH A 606 63.196 60.117 64.628 1.00 31.11 O HETATM 3060 O HOH A 607 61.145 54.411 50.231 1.00 27.64 O HETATM 3061 O HOH A 608 56.761 49.689 48.858 1.00 56.96 O HETATM 3062 O HOH A 610 60.070 42.293 22.229 1.00 63.55 O HETATM 3063 O HOH A 611 64.660 36.857 30.175 1.00 75.17 O HETATM 3064 O HOH A 616 42.160 38.588 52.951 1.00100.00 O HETATM 3065 O HOH A 617 63.003 26.529 44.487 1.00 88.89 O HETATM 3066 O HOH A 618 83.489 31.156 43.564 1.00 54.46 O HETATM 3067 O HOH A 620 77.762 29.892 62.683 1.00 41.89 O HETATM 3068 O HOH A 621 72.391 19.349 65.745 1.00 72.26 O HETATM 3069 O HOH A 622 63.982 15.904 62.686 1.00 84.94 O HETATM 3070 O HOH A 623 62.620 24.185 74.597 1.00 92.82 O HETATM 3071 O HOH A 624 65.002 23.134 28.588 1.00 50.77 O HETATM 3072 O HOH A 625 71.590 20.271 30.111 1.00 43.42 O HETATM 3073 O HOH A 626 70.995 35.529 25.774 1.00 62.27 O HETATM 3074 O HOH A 627 81.979 38.912 24.101 1.00 88.07 O HETATM 3075 O HOH A 628 64.662 35.618 23.733 1.00 15.70 O HETATM 3076 O HOH A 629 68.817 33.247 37.880 1.00 59.99 O HETATM 3077 O HOH A 631 75.049 39.931 47.740 1.00 42.56 O HETATM 3078 O HOH A 636 81.861 14.043 61.854 1.00 87.67 O HETATM 3079 O HOH A 637 81.333 14.270 66.264 1.00100.00 O HETATM 3080 O HOH A 638 47.886 37.961 76.134 1.00 30.53 O HETATM 3081 O HOH A 639 56.597 41.277 69.601 1.00 39.76 O HETATM 3082 O HOH A 640 60.861 37.460 66.936 1.00 41.37 O HETATM 3083 O HOH A 641 43.886 39.317 59.670 1.00 23.56 O HETATM 3084 O HOH A 642 60.697 63.093 62.398 1.00 14.31 O HETATM 3085 O HOH A 643 58.425 14.552 68.780 1.00 61.65 O HETATM 3086 O HOH A 644 75.213 10.941 36.649 1.00 30.30 O HETATM 3087 O HOH A 645 56.473 46.700 75.381 1.00 40.54 O HETATM 3088 O HOH A 646 39.208 43.865 74.276 1.00 69.10 O HETATM 3089 O HOH A 647 50.297 36.094 76.733 1.00 73.07 O HETATM 3090 O HOH A 649 47.191 53.944 69.699 1.00 57.76 O HETATM 3091 O HOH A 650 57.917 48.473 22.542 1.00 1.00 O CONECT 250 2937 CONECT 1030 2937 CONECT 1048 2937 CONECT 1065 2937 CONECT 2936 2940 2945 2948 CONECT 2937 250 1030 1048 1065 CONECT 2937 3055 CONECT 2939 2940 2941 2942 2951 CONECT 2940 2936 2939 CONECT 2941 2939 CONECT 2942 2939 2943 CONECT 2943 2942 2944 2945 2946 CONECT 2944 2943 CONECT 2945 2936 2943 CONECT 2946 2943 2947 CONECT 2947 2946 2948 2949 2950 CONECT 2948 2936 2947 CONECT 2949 2947 CONECT 2950 2947 CONECT 2951 2939 2952 CONECT 2952 2951 2953 CONECT 2953 2952 2954 2955 CONECT 2954 2953 2958 CONECT 2955 2953 2956 2957 CONECT 2956 2955 CONECT 2957 2955 2958 CONECT 2958 2954 2957 CONECT 3055 2937 MASTER 820 0 4 16 7 0 8 6 3088 3 28 28 END