HEADER TRANSFERASE/RNA 13-FEB-23 8IDF TITLE CRYSTAL STRUCTURE OF HUMAN TUT1 COMPLEXED WITH U6 SNRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE TARGETED PIP5K1A-REGULATED POLY(A) POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STAR-PAP,RNA-BINDING MOTIF PROTEIN 21,RNA-BINDING PROTEIN COMPND 5 21,U6 SNRNA-SPECIFIC TERMINAL URIDYLYLTRANSFERASE 1,U6-TUTASE; COMPND 6 EC: 2.7.7.19,2.7.7.52; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (53-MER); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TUT1, RBM21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS NUCLEOTIDYL TRANSFERASE, TRANSFERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.YAMASHITA,K.TOMITA REVDAT 2 23-AUG-23 8IDF 1 JRNL REVDAT 1 09-AUG-23 8IDF 0 JRNL AUTH S.YAMASHITA,K.TOMITA JRNL TITL MECHANISM OF U6 SNRNA OLIGOURIDYLATION BY HUMAN TUT1. JRNL REF NAT COMMUN V. 14 4686 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37563152 JRNL DOI 10.1038/S41467-023-40420-9 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.306 REMARK 3 R VALUE (WORKING SET) : 0.305 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9900 - 6.2700 1.00 2615 129 0.2429 0.2679 REMARK 3 2 6.2700 - 5.0000 1.00 2578 138 0.3542 0.3434 REMARK 3 3 5.0000 - 4.3800 1.00 2561 139 0.3237 0.4391 REMARK 3 4 4.3800 - 3.9800 1.00 2600 139 0.3342 0.3703 REMARK 3 5 3.9800 - 3.7000 0.97 2538 135 0.3786 0.3762 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 110.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 209.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 7:56 OR RESID 1001:1001 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.536 -1.012 -22.340 REMARK 3 T TENSOR REMARK 3 T11: 1.3396 T22: 1.9783 REMARK 3 T33: 1.4621 T12: -0.3269 REMARK 3 T13: -0.1888 T23: 0.5690 REMARK 3 L TENSOR REMARK 3 L11: 6.2787 L22: 4.8315 REMARK 3 L33: 4.6634 L12: -1.1089 REMARK 3 L13: 2.7394 L23: -4.0581 REMARK 3 S TENSOR REMARK 3 S11: 1.3983 S12: -0.3102 S13: -2.1219 REMARK 3 S21: 1.7437 S22: 1.4308 S23: 1.9191 REMARK 3 S31: -0.0576 S32: -1.3549 S33: -1.9189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 57:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.396 11.673 -47.643 REMARK 3 T TENSOR REMARK 3 T11: 0.7295 T22: 1.3461 REMARK 3 T33: 1.2310 T12: -0.2370 REMARK 3 T13: 0.0265 T23: 0.4163 REMARK 3 L TENSOR REMARK 3 L11: 6.9005 L22: 4.1629 REMARK 3 L33: 7.5452 L12: 0.1407 REMARK 3 L13: -2.5561 L23: 3.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.7466 S12: 0.5340 S13: 0.7034 REMARK 3 S21: 0.8008 S22: 0.8866 S23: 0.1148 REMARK 3 S31: -1.8666 S32: -1.0647 S33: -0.7290 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 145:599 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.618 -19.144 -18.812 REMARK 3 T TENSOR REMARK 3 T11: 1.2553 T22: 0.4893 REMARK 3 T33: 0.6448 T12: 0.1622 REMARK 3 T13: 0.1705 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.9120 L22: 4.0051 REMARK 3 L33: 10.0488 L12: -1.6315 REMARK 3 L13: -0.1887 L23: -5.3202 REMARK 3 S TENSOR REMARK 3 S11: 0.5641 S12: -0.5621 S13: -0.1430 REMARK 3 S21: 0.6492 S22: -0.2508 S23: 0.0723 REMARK 3 S31: 2.4719 S32: 0.8439 S33: -0.1914 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.561 5.596 -38.575 REMARK 3 T TENSOR REMARK 3 T11: 1.2250 T22: 2.2982 REMARK 3 T33: 1.2447 T12: 0.0580 REMARK 3 T13: 0.3084 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 6.7313 L22: 4.3700 REMARK 3 L33: 3.5134 L12: 4.1638 REMARK 3 L13: 2.3507 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.5096 S12: -1.0435 S13: 1.2257 REMARK 3 S21: 1.8857 S22: -1.2833 S23: -2.7152 REMARK 3 S31: -1.5426 S32: -0.2580 S33: 0.3624 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 10:51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.479 -15.618 -7.872 REMARK 3 T TENSOR REMARK 3 T11: 4.1961 T22: 3.2333 REMARK 3 T33: 3.2622 T12: 0.5416 REMARK 3 T13: -1.2431 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 5.9875 L22: 1.6344 REMARK 3 L33: 3.9754 L12: 3.7574 REMARK 3 L13: 5.4922 L23: 2.9924 REMARK 3 S TENSOR REMARK 3 S11: 0.4364 S12: -2.6664 S13: -2.0853 REMARK 3 S21: 0.9952 S22: 0.9828 S23: -2.1151 REMARK 3 S31: 0.0953 S32: -0.7619 S33: -2.2267 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 52:53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.149 -19.402 -26.178 REMARK 3 T TENSOR REMARK 3 T11: 4.9185 T22: -0.1268 REMARK 3 T33: 2.2706 T12: 0.8329 REMARK 3 T13: -0.0610 T23: 0.6621 REMARK 3 L TENSOR REMARK 3 L11: 0.5601 L22: 0.0963 REMARK 3 L33: 2.4559 L12: -0.2327 REMARK 3 L13: -1.1702 L23: 0.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.2989 S12: 0.6792 S13: 2.1780 REMARK 3 S21: 1.3253 S22: -1.5344 S23: -5.4558 REMARK 3 S31: -0.1078 S32: 0.6193 S33: 0.6053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300028994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13674 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 42.17 REMARK 200 R MERGE (I) : 0.53200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.82 REMARK 200 R MERGE FOR SHELL (I) : 4.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WU1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BISTRIS PH 6.4, 18% PEG 3350, 2% REMARK 280 TACSIMATE PH 6.0, 8% ACETONITRILE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 246.84800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.42400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.13600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.71200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 308.56000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 246.84800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.42400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.71200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 185.13600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 308.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 ALA A 135 REMARK 465 SER A 136 REMARK 465 LYS A 137 REMARK 465 SER A 138 REMARK 465 PRO A 139 REMARK 465 LYS A 140 REMARK 465 GLY A 141 REMARK 465 ALA A 142 REMARK 465 ALA A 143 REMARK 465 PRO A 144 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 LEU A 296 REMARK 465 GLU A 297 REMARK 465 GLU A 298 REMARK 465 PRO A 299 REMARK 465 GLN A 300 REMARK 465 PRO A 301 REMARK 465 VAL A 302 REMARK 465 PRO A 303 REMARK 465 LYS A 304 REMARK 465 LEU A 305 REMARK 465 PRO A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 SER A 309 REMARK 465 PRO A 310 REMARK 465 LEU A 311 REMARK 465 LEU A 312 REMARK 465 GLU A 313 REMARK 465 ASP A 314 REMARK 465 ARG A 315 REMARK 465 GLU A 316 REMARK 465 GLU A 317 REMARK 465 GLY A 318 REMARK 465 ASP A 319 REMARK 465 LEU A 320 REMARK 465 GLY A 321 REMARK 465 LYS A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 GLU A 325 REMARK 465 LEU A 326 REMARK 465 ALA A 327 REMARK 465 GLU A 328 REMARK 465 THR A 329 REMARK 465 PRO A 330 REMARK 465 LYS A 331 REMARK 465 GLU A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 ALA A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 521 REMARK 465 VAL A 522 REMARK 465 ALA A 523 REMARK 465 GLY A 524 REMARK 465 GLY A 525 REMARK 465 LEU A 526 REMARK 465 PRO A 527 REMARK 465 SER A 528 REMARK 465 ASN A 529 REMARK 465 LEU A 530 REMARK 465 TRP A 531 REMARK 465 LEU A 600 REMARK 465 GLU A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 12 172.72 -59.43 REMARK 500 PHE A 79 31.51 -99.34 REMARK 500 ASP A 90 -16.68 73.14 REMARK 500 SER A 146 -6.22 68.69 REMARK 500 PHE A 203 -169.33 -165.88 REMARK 500 SER A 209 -4.26 68.93 REMARK 500 PRO A 427 63.38 -69.61 REMARK 500 ASP A 469 61.46 61.51 REMARK 500 SER A 548 -23.48 -150.32 REMARK 500 ARG A 585 45.38 -93.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 118.3 REMARK 620 3 HIS A 34 NE2 107.5 103.7 REMARK 620 4 HIS A 40 ND1 109.7 110.5 106.2 REMARK 620 N 1 2 3 DBREF 8IDF A 1 599 UNP Q9H6E5 STPAP_HUMAN 1 599 DBREF 8IDF B 1 53 PDB 8IDF 8IDF 1 53 SEQADV 8IDF SER A 19 UNP Q9H6E5 CYS 19 ENGINEERED MUTATION SEQADV 8IDF ALA A 218 UNP Q9H6E5 ASP 218 ENGINEERED MUTATION SEQADV 8IDF A UNP Q9H6E5 ALA 235 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 236 DELETION SEQADV 8IDF A UNP Q9H6E5 GLU 237 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 238 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 239 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 240 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 241 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 242 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 243 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 244 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 245 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 246 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 247 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 248 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 249 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 250 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 251 DELETION SEQADV 8IDF A UNP Q9H6E5 GLN 252 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 253 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 254 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 255 DELETION SEQADV 8IDF A UNP Q9H6E5 CYS 256 DELETION SEQADV 8IDF A UNP Q9H6E5 THR 257 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 258 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 259 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 260 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 261 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 262 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 263 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 264 DELETION SEQADV 8IDF A UNP Q9H6E5 GLN 265 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 266 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 267 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 268 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 269 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 270 DELETION SEQADV 8IDF A UNP Q9H6E5 GLN 271 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 272 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 273 DELETION SEQADV 8IDF A UNP Q9H6E5 GLU 274 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 275 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 276 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 277 DELETION SEQADV 8IDF A UNP Q9H6E5 PHE 278 DELETION SEQADV 8IDF A UNP Q9H6E5 GLU 279 DELETION SEQADV 8IDF A UNP Q9H6E5 THR 280 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 281 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 282 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 283 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 284 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 285 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 286 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 287 DELETION SEQADV 8IDF A UNP Q9H6E5 GLN 288 DELETION SEQADV 8IDF A UNP Q9H6E5 THR 289 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 290 DELETION SEQADV 8IDF A UNP Q9H6E5 ASP 291 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 292 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 293 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 294 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 295 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 296 DELETION SEQADV 8IDF A UNP Q9H6E5 GLU 297 DELETION SEQADV 8IDF A UNP Q9H6E5 THR 298 DELETION SEQADV 8IDF A UNP Q9H6E5 LEU 299 DELETION SEQADV 8IDF A UNP Q9H6E5 ALA 300 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 301 DELETION SEQADV 8IDF A UNP Q9H6E5 PRO 302 DELETION SEQADV 8IDF A UNP Q9H6E5 GLN 303 DELETION SEQADV 8IDF A UNP Q9H6E5 SER 304 DELETION SEQADV 8IDF ALA A 372 UNP Q9H6E5 CYS 372 ENGINEERED MUTATION SEQADV 8IDF ALA A 399 UNP Q9H6E5 CYS 399 ENGINEERED MUTATION SEQADV 8IDF ALA A 415 UNP Q9H6E5 CYS 415 ENGINEERED MUTATION SEQADV 8IDF ALA A 501 UNP Q9H6E5 CYS 501 ENGINEERED MUTATION SEQADV 8IDF SER A 504 UNP Q9H6E5 CYS 504 ENGINEERED MUTATION SEQADV 8IDF ALA A 574 UNP Q9H6E5 CYS 574 ENGINEERED MUTATION SEQADV 8IDF LEU A 600 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF GLU A 601 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 602 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 603 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 604 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 605 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 606 UNP Q9H6E5 EXPRESSION TAG SEQADV 8IDF HIS A 607 UNP Q9H6E5 EXPRESSION TAG SEQRES 1 A 537 MET ALA ALA VAL ASP SER ASP VAL GLU SER LEU PRO ARG SEQRES 2 A 537 GLY GLY PHE ARG CYS SER LEU CYS HIS VAL THR THR ALA SEQRES 3 A 537 ASN ARG PRO SER LEU ASP ALA HIS LEU GLY GLY ARG LYS SEQRES 4 A 537 HIS ARG HIS LEU VAL GLU LEU ARG ALA ALA ARG LYS ALA SEQRES 5 A 537 GLN GLY LEU ARG SER VAL PHE VAL SER GLY PHE PRO ARG SEQRES 6 A 537 ASP VAL ASP SER ALA GLN LEU SER GLU TYR PHE LEU ALA SEQRES 7 A 537 PHE GLY PRO VAL ALA SER VAL VAL MET ASP LYS ASP LYS SEQRES 8 A 537 GLY VAL PHE ALA ILE VAL GLU MET GLY ASP VAL GLY ALA SEQRES 9 A 537 ARG GLU ALA VAL LEU SER GLN SER GLN HIS SER LEU GLY SEQRES 10 A 537 GLY HIS ARG LEU ARG VAL ARG PRO ARG GLU GLN LYS GLU SEQRES 11 A 537 PHE GLN SER PRO ALA SER LYS SER PRO LYS GLY ALA ALA SEQRES 12 A 537 PRO ASP SER HIS GLN LEU ALA LYS ALA LEU ALA GLU ALA SEQRES 13 A 537 ALA ASP VAL GLY ALA GLN MET ILE LYS LEU VAL GLY LEU SEQRES 14 A 537 ARG GLU LEU SER GLU ALA GLU ARG GLN LEU ARG SER LEU SEQRES 15 A 537 VAL VAL ALA LEU MET GLN GLU VAL PHE THR GLU PHE PHE SEQRES 16 A 537 PRO GLY CYS VAL VAL HIS PRO PHE GLY SER SER ILE ASN SEQRES 17 A 537 SER PHE ASP VAL HIS GLY CYS ASP LEU ALA LEU PHE LEU SEQRES 18 A 537 ASP LEU GLY ASP LEU GLU GLU PRO GLN PRO VAL PRO LYS SEQRES 19 A 537 LEU PRO PRO ALA SER PRO LEU LEU GLU ASP ARG GLU GLU SEQRES 20 A 537 GLY ASP LEU GLY LYS ALA SER GLU LEU ALA GLU THR PRO SEQRES 21 A 537 LYS GLU GLU LYS ALA GLU GLY ALA ALA MET LEU GLU LEU SEQRES 22 A 537 VAL GLY SER ILE LEU ARG GLY CYS VAL PRO GLY VAL TYR SEQRES 23 A 537 ARG VAL GLN THR VAL PRO SER ALA ARG ARG PRO VAL VAL SEQRES 24 A 537 LYS PHE ALA HIS ARG PRO SER GLY LEU HIS GLY ASP VAL SEQRES 25 A 537 SER LEU SER ASN ARG LEU ALA LEU HIS ASN SER ARG PHE SEQRES 26 A 537 LEU SER LEU ALA SER GLU LEU ASP GLY ARG VAL ARG PRO SEQRES 27 A 537 LEU VAL TYR THR LEU ARG ALA TRP ALA GLN GLY ARG GLY SEQRES 28 A 537 LEU SER GLY SER GLY PRO LEU LEU SER ASN TYR ALA LEU SEQRES 29 A 537 THR LEU LEU VAL ILE TYR PHE LEU GLN THR ARG ASP PRO SEQRES 30 A 537 PRO VAL LEU PRO THR VAL SER GLN LEU THR GLN LYS ALA SEQRES 31 A 537 GLY GLU GLY GLU GLN VAL GLU VAL ASP GLY TRP ASP CYS SEQRES 32 A 537 SER PHE PRO ARG ASP ALA SER ARG LEU GLU PRO SER ILE SEQRES 33 A 537 ASN VAL GLU PRO LEU SER SER LEU LEU ALA GLN PHE PHE SEQRES 34 A 537 SER ALA VAL SER SER TRP ASP LEU ARG GLY SER LEU LEU SEQRES 35 A 537 SER LEU ARG GLU GLY GLN ALA LEU PRO VAL ALA GLY GLY SEQRES 36 A 537 LEU PRO SER ASN LEU TRP GLU GLY LEU ARG LEU GLY PRO SEQRES 37 A 537 LEU ASN LEU GLN ASP PRO PHE ASP LEU SER HIS ASN VAL SEQRES 38 A 537 ALA ALA ASN VAL THR SER ARG VAL ALA GLY ARG LEU GLN SEQRES 39 A 537 ASN CYS CYS ARG ALA ALA ALA ASN TYR ALA ARG SER LEU SEQRES 40 A 537 GLN TYR GLN ARG ARG SER SER ARG GLY ARG ASP TRP GLY SEQRES 41 A 537 LEU LEU PRO LEU LEU GLN PRO SER SER LEU GLU HIS HIS SEQRES 42 A 537 HIS HIS HIS HIS SEQRES 1 B 53 G G A U A C U A A A A U U SEQRES 2 B 53 G G A A C G A U A C A G A SEQRES 3 B 53 G U U C G C U C G U G A A SEQRES 4 B 53 G C G U U C C A U A U U U SEQRES 5 B 53 U HET ZN A1001 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 ASN A 27 GLY A 36 1 10 HELIX 2 AA2 GLY A 37 ARG A 56 1 20 HELIX 3 AA3 ASP A 68 LEU A 77 1 10 HELIX 4 AA4 ALA A 78 GLY A 80 5 3 HELIX 5 AA5 ASP A 101 GLY A 103 5 3 HELIX 6 AA6 ALA A 104 SER A 110 1 7 HELIX 7 AA7 HIS A 147 ALA A 152 1 6 HELIX 8 AA8 ASP A 158 GLU A 171 1 14 HELIX 9 AA9 SER A 173 PHE A 195 1 23 HELIX 10 AB1 ALA A 338 CYS A 351 1 14 HELIX 11 AB2 ASN A 386 GLU A 401 1 16 HELIX 12 AB3 ARG A 405 GLY A 419 1 15 HELIX 13 AB4 SER A 430 ARG A 445 1 16 HELIX 14 AB5 THR A 452 LYS A 459 1 8 HELIX 15 AB6 PRO A 490 TRP A 505 1 16 HELIX 16 AB7 THR A 556 SER A 576 1 21 HELIX 17 AB8 SER A 576 ARG A 581 1 6 HELIX 18 AB9 LEU A 591 GLN A 596 1 6 SHEET 1 AA1 3 VAL A 8 LEU A 11 0 SHEET 2 AA1 3 GLY A 15 CYS A 18 -1 O GLY A 15 N LEU A 11 SHEET 3 AA1 3 VAL A 23 THR A 25 -1 O THR A 25 N PHE A 16 SHEET 1 AA2 4 VAL A 82 MET A 87 0 SHEET 2 AA2 4 ALA A 95 MET A 99 -1 O ILE A 96 N VAL A 86 SHEET 3 AA2 4 SER A 57 SER A 61 -1 N VAL A 60 O ALA A 95 SHEET 4 AA2 4 ARG A 122 PRO A 125 -1 O ARG A 124 N PHE A 59 SHEET 1 AA3 2 SER A 115 LEU A 116 0 SHEET 2 AA3 2 HIS A 119 ARG A 120 -1 O HIS A 119 N LEU A 116 SHEET 1 AA4 5 VAL A 199 GLY A 204 0 SHEET 2 AA4 5 LEU A 217 ASP A 222 -1 O ASP A 222 N VAL A 199 SHEET 3 AA4 5 LEU A 378 SER A 383 1 O SER A 383 N LEU A 219 SHEET 4 AA4 5 VAL A 368 HIS A 373 -1 N PHE A 371 O GLY A 380 SHEET 5 AA4 5 VAL A 355 VAL A 361 -1 N GLN A 359 O LYS A 370 SHEET 1 AA5 2 LEU A 512 SER A 513 0 SHEET 2 AA5 2 GLN A 518 ALA A 519 -1 O GLN A 518 N SER A 513 LINK SG CYS A 18 ZN ZN A1001 1555 1555 2.31 LINK SG CYS A 21 ZN ZN A1001 1555 1555 2.31 LINK NE2 HIS A 34 ZN ZN A1001 1555 1555 2.05 LINK ND1 HIS A 40 ZN ZN A1001 1555 1555 2.04 CRYST1 78.724 78.724 370.272 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012703 0.007334 0.000000 0.00000 SCALE2 0.000000 0.014668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002701 0.00000