HEADER NUCLEAR PROTEIN 15-FEB-23 8IEG TITLE BRE1(MRBD-RING)/RAD6-UB/NUCLEOSOME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: K, E; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: L, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 14 CHAIN: C, G; COMPND 15 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 19 CHAIN: D; COMPND 20 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 24 CHAIN: H; COMPND 25 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: DNA (147-MER); COMPND 29 CHAIN: I; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: DNA (147-MER); COMPND 33 CHAIN: J; COMPND 34 ENGINEERED: YES; COMPND 35 MOL_ID: 8; COMPND 36 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE BRE1; COMPND 37 CHAIN: A, B; COMPND 38 SYNONYM: BREFELDIN A-SENSITIVITY PROTEIN 1,RING-TYPE E3 UBIQUITIN COMPND 39 TRANSFERASE BRE1; COMPND 40 EC: 2.3.2.27; COMPND 41 ENGINEERED: YES; COMPND 42 MOL_ID: 9; COMPND 43 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 2; COMPND 44 CHAIN: R; COMPND 45 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME 2,RADIATION SENSITIVITY COMPND 46 PROTEIN 6,UBIQUITIN CARRIER PROTEIN UBC2,UBIQUITIN-PROTEIN LIGASE COMPND 47 UBC2; COMPND 48 EC: 2.3.2.23; COMPND 49 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 6 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 7 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 8 HIST1H3I, H3C12, H3FJ, HIST1H3J; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, SOURCE 16 H4/G, H4FG, HIST1H4C, H4C4, H4/B, H4FB, HIST1H4D, H4C5, H4/J, H4FJ, SOURCE 17 HIST1H4E, H4C6, H4/C, H4FC, HIST1H4F, H4C8, H4/H, H4FH, HIST1H4H, SOURCE 18 H4C9, H4/M, H4FM, HIST1H4I, H4C11, H4/E, H4FE, HIST1H4J, H4C12, SOURCE 19 H4/D, H4FD, HIST1H4K, H4C13, H4/K, H4FK, HIST1H4L, H4C14, H4/N, SOURCE 20 H4F2, H4FN, HIST2H4, HIST2H4A, H4C15, H4/O, H4FO, HIST2H4B, H4C16, SOURCE 21 H4-16, HIST4H4; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 3; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 GENE: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: H2BC12, H2BFT, HIRIP1, HIST1H2BK; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 MOL_ID: 5; SOURCE 39 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 40 ORGANISM_COMMON: HUMAN; SOURCE 41 ORGANISM_TAXID: 9606; SOURCE 42 GENE: H2BC12, H2BFT, HIRIP1, HIST1H2BK; SOURCE 43 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 44 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 45 MOL_ID: 6; SOURCE 46 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 47 ORGANISM_COMMON: HUMAN; SOURCE 48 ORGANISM_TAXID: 9606; SOURCE 49 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 50 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 51 MOL_ID: 7; SOURCE 52 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 53 ORGANISM_COMMON: HUMAN; SOURCE 54 ORGANISM_TAXID: 9606; SOURCE 55 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 56 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 57 MOL_ID: 8; SOURCE 58 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 59 S288C); SOURCE 60 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 61 ORGANISM_TAXID: 559292; SOURCE 62 GENE: BRE1, YDL074C; SOURCE 63 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 64 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 65 MOL_ID: 9; SOURCE 66 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 67 S288C); SOURCE 68 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 69 ORGANISM_TAXID: 559292; SOURCE 70 GENE: RAD6, UBC2, YGL058W; SOURCE 71 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 72 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSOME, BRE1, RAD6, UB, NUCLEAR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.AI,Z.DENG,M.PAN,L.LIU REVDAT 2 20-SEP-23 8IEG 1 JRNL REVDAT 1 06-SEP-23 8IEG 0 JRNL AUTH Z.DENG,H.AI,M.SUN,Z.TONG,Y.DU,Q.QU,L.ZHANG,Z.XU,S.TAO,Q.SHI, JRNL AUTH 2 J.B.LI,M.PAN,L.LIU JRNL TITL MECHANISTIC INSIGHTS INTO NUCLEOSOMAL H2B MONOUBIQUITYLATION JRNL TITL 2 MEDIATED BY YEAST BRE1-RAD6 AND ITS HUMAN HOMOLOG JRNL TITL 3 RNF20/RNF40-HRAD6A. JRNL REF MOL.CELL V. 83 3080 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 37633270 JRNL DOI 10.1016/J.MOLCEL.2023.08.001 REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.440 REMARK 3 NUMBER OF PARTICLES : 826181 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8IEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035506. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BRE1(MRBD-RING)/RAD6-UB IN REMARK 245 COMPLEX WITH NUCLEOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: A, B, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS E 37 REMARK 465 LEU F 22 REMARK 465 GLU B 637 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 ARG F 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 118 CG CD CE NZ REMARK 470 GLU A 637 CG CD OE1 OE2 REMARK 470 LYS B 653 CG CD CE NZ REMARK 470 LYS B 661 CG CD CE NZ REMARK 470 ARG R 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 14 CG CD CE NZ REMARK 470 ARG R 15 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 17 CG CD CE NZ REMARK 470 GLU R 18 CG CD OE1 OE2 REMARK 470 ASP R 19 CG OD1 OD2 REMARK 470 PRO R 21 CG CD REMARK 470 LEU R 29 CG CD1 CD2 REMARK 470 ASP R 31 CG OD1 OD2 REMARK 470 ASP R 45 CG OD1 OD2 REMARK 470 TYR R 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU R 58 CG CD OE1 OE2 REMARK 470 PHE R 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU R 61 CG CD OE1 OE2 REMARK 470 TYR R 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS R 66 CG CD CE NZ REMARK 470 HIS R 69 CG ND1 CD2 CE1 NE2 REMARK 470 GLU R 75 CG CD OE1 OE2 REMARK 470 ASN R 94 CG OD1 ND2 REMARK 470 ARG R 95 CG CD NE CZ NH1 NH2 REMARK 470 LEU R 112 CG CD1 CD2 REMARK 470 ASN R 114 CG OD1 ND2 REMARK 470 ASP R 115 CG OD1 OD2 REMARK 470 VAL R 124 CG1 CG2 REMARK 470 THR R 128 OG1 CG2 REMARK 470 LYS R 131 CG CD CE NZ REMARK 470 ASP R 132 CG OD1 OD2 REMARK 470 GLN R 136 CG CD OE1 NE2 REMARK 470 LYS R 139 CG CD CE NZ REMARK 470 GLU R 143 CG CD OE1 OE2 REMARK 470 GLU R 146 CG CD OE1 OE2 REMARK 470 LYS R 147 CG CD CE NZ REMARK 470 GLU R 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 699 O LEU A 700 1.71 REMARK 500 NH1 ARG B 679 CD ARG B 681 1.89 REMARK 500 OD2 ASP C 90 NH2 ARG A 679 1.94 REMARK 500 CD2 LEU C 65 NH1 ARG A 681 1.96 REMARK 500 CB PRO R 4 NH1 ARG R 7 2.09 REMARK 500 OH TYR C 50 OE1 GLN D 95 2.11 REMARK 500 O LEU K 61 NH1 ARG L 36 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC J -27 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA J 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP K 81 47.44 34.83 REMARK 500 ARG C 11 -61.68 -92.91 REMARK 500 ASP E 81 47.68 35.14 REMARK 500 ARG G 11 -61.52 -91.04 REMARK 500 VAL H 48 -60.44 -93.83 REMARK 500 ASN A 657 24.96 -142.68 REMARK 500 ARG A 681 32.54 -93.85 REMARK 500 THR A 685 -62.18 -95.07 REMARK 500 ASN A 687 17.69 58.45 REMARK 500 SER B 652 15.69 59.14 REMARK 500 MET B 680 55.78 -91.86 REMARK 500 SER R 120 79.60 -114.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 648 SG REMARK 620 2 CYS A 651 SG 112.5 REMARK 620 3 CYS A 668 SG 110.4 107.2 REMARK 620 4 CYS A 671 SG 111.0 114.4 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 663 SG REMARK 620 2 HIS A 665 ND1 74.5 REMARK 620 3 CYS A 683 SG 105.2 84.9 REMARK 620 4 CYS A 686 SG 114.6 156.0 112.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 648 SG REMARK 620 2 CYS B 651 SG 109.8 REMARK 620 3 CYS B 668 SG 113.4 110.1 REMARK 620 4 CYS B 671 SG 109.1 113.0 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 663 SG REMARK 620 2 HIS B 665 ND1 93.1 REMARK 620 3 CYS B 683 SG 111.0 101.1 REMARK 620 4 CYS B 686 SG 114.4 126.1 109.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35381 RELATED DB: EMDB REMARK 900 BRE1(MRBD-RING)/RAD6-UB/NUCLEOSOME COMPLEX DBREF 8IEG K 37 134 UNP P68431 H31_HUMAN 38 135 DBREF 8IEG L 22 101 UNP P62805 H4_HUMAN 23 102 DBREF 8IEG C 10 118 UNP P04908 H2A1B_HUMAN 11 119 DBREF 8IEG D 31 124 UNP O60814 H2B1K_HUMAN 32 125 DBREF 8IEG E 37 134 UNP P68431 H31_HUMAN 38 135 DBREF 8IEG F 22 101 UNP P62805 H4_HUMAN 23 102 DBREF 8IEG G 10 118 UNP P04908 H2A1B_HUMAN 11 119 DBREF 8IEG H 31 124 UNP O60814 H2B1K_HUMAN 32 125 DBREF 8IEG I -73 73 PDB 8IEG 8IEG -73 73 DBREF 8IEG J -73 73 PDB 8IEG 8IEG -73 73 DBREF 8IEG A 637 700 UNP Q07457 BRE1_YEAST 637 700 DBREF 8IEG B 637 700 UNP Q07457 BRE1_YEAST 637 700 DBREF 8IEG R 3 150 UNP P06104 UBC2_YEAST 3 150 SEQADV 8IEG CYS D 120 UNP O60814 LYS 121 CONFLICT SEQRES 1 K 98 LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG SEQRES 2 K 98 GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE SEQRES 3 K 98 ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA SEQRES 4 K 98 GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA SEQRES 5 K 98 VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL SEQRES 6 K 98 GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA SEQRES 7 K 98 LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA SEQRES 8 K 98 ARG ARG ILE ARG GLY GLU ARG SEQRES 1 L 80 LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE SEQRES 2 L 80 ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER SEQRES 3 L 80 GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL SEQRES 4 L 80 PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR SEQRES 5 L 80 GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL SEQRES 6 L 80 VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY SEQRES 7 L 80 PHE GLY SEQRES 1 C 109 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 2 C 109 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 3 C 109 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 4 C 109 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 5 C 109 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 6 C 109 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 C 109 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 8 C 109 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 9 C 109 VAL LEU LEU PRO LYS SEQRES 1 D 94 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 D 94 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 D 94 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 D 94 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 D 94 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 D 94 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 D 94 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR CYS TYR SEQRES 8 D 94 THR SER ALA SEQRES 1 E 98 LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG SEQRES 2 E 98 GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE SEQRES 3 E 98 ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA SEQRES 4 E 98 GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA SEQRES 5 E 98 VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL SEQRES 6 E 98 GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA SEQRES 7 E 98 LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA SEQRES 8 E 98 ARG ARG ILE ARG GLY GLU ARG SEQRES 1 F 80 LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE SEQRES 2 F 80 ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER SEQRES 3 F 80 GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL SEQRES 4 F 80 PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR SEQRES 5 F 80 GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL SEQRES 6 F 80 VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY SEQRES 7 F 80 PHE GLY SEQRES 1 G 109 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 2 G 109 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 3 G 109 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 4 G 109 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 5 G 109 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 6 G 109 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 G 109 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 8 G 109 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 9 G 109 VAL LEU LEU PRO LYS SEQRES 1 H 94 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 H 94 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 H 94 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 H 94 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 H 94 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 H 94 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 H 94 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 H 94 THR SER ALA SEQRES 1 I 147 DA DC DA DG DG DA DT DG DT DA DT DA DT SEQRES 2 I 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 I 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 I 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 I 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 I 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 I 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 I 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 I 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 I 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 I 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 I 147 DC DC DA DG SEQRES 1 J 147 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 147 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 147 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 147 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 147 DC DT DG DT SEQRES 1 A 64 GLU GLU LEU ALA ASN PHE ARG THR LEU VAL TYR CYS SER SEQRES 2 A 64 LEU CYS SER LYS ASN TRP LYS ASN MET ALA ILE LYS THR SEQRES 3 A 64 CYS GLY HIS VAL PHE CYS GLU ASN CYS CYS LYS GLU ARG SEQRES 4 A 64 LEU ALA ALA ARG MET ARG LYS CYS PRO THR CYS ASN LYS SEQRES 5 A 64 ALA PHE SER SER ASN ASP LEU LEU THR VAL HIS LEU SEQRES 1 B 64 GLU GLU LEU ALA ASN PHE ARG THR LEU VAL TYR CYS SER SEQRES 2 B 64 LEU CYS SER LYS ASN TRP LYS ASN MET ALA ILE LYS THR SEQRES 3 B 64 CYS GLY HIS VAL PHE CYS GLU ASN CYS CYS LYS GLU ARG SEQRES 4 B 64 LEU ALA ALA ARG MET ARG LYS CYS PRO THR CYS ASN LYS SEQRES 5 B 64 ALA PHE SER SER ASN ASP LEU LEU THR VAL HIS LEU SEQRES 1 R 148 THR PRO ALA ARG ARG ARG LEU MET ARG ASP PHE LYS ARG SEQRES 2 R 148 MET LYS GLU ASP ALA PRO PRO GLY VAL SER ALA SER PRO SEQRES 3 R 148 LEU PRO ASP ASN VAL MET VAL TRP ASN ALA MET ILE ILE SEQRES 4 R 148 GLY PRO ALA ASP THR PRO TYR GLU ASP GLY THR PHE ARG SEQRES 5 R 148 LEU LEU LEU GLU PHE ASP GLU GLU TYR PRO ASN LYS PRO SEQRES 6 R 148 PRO HIS VAL LYS PHE LEU SER GLU MET PHE HIS PRO ASN SEQRES 7 R 148 VAL TYR ALA ASN GLY GLU ILE CYS LEU ASP ILE LEU GLN SEQRES 8 R 148 ASN ARG TRP THR PRO THR TYR ASP VAL ALA SER ILE LEU SEQRES 9 R 148 THR SER ILE GLN SER LEU PHE ASN ASP PRO ASN PRO ALA SEQRES 10 R 148 SER PRO ALA ASN VAL GLU ALA ALA THR LEU PHE LYS ASP SEQRES 11 R 148 HIS LYS SER GLN TYR VAL LYS ARG VAL LYS GLU THR VAL SEQRES 12 R 148 GLU LYS SER TRP GLU HET ZN A 801 1 HET ZN A 802 1 HET ZN B 801 1 HET ZN B 802 1 HETNAM ZN ZINC ION FORMUL 14 ZN 4(ZN 2+) HELIX 1 AA1 GLY K 44 GLN K 55 1 12 HELIX 2 AA2 ARG K 63 GLN K 76 1 14 HELIX 3 AA3 GLN K 85 ALA K 114 1 30 HELIX 4 AA4 MET K 120 ARG K 131 1 12 HELIX 5 AA5 ASN L 25 ILE L 29 5 5 HELIX 6 AA6 THR L 30 GLY L 41 1 12 HELIX 7 AA7 LEU L 49 ALA L 76 1 28 HELIX 8 AA8 THR L 82 GLN L 93 1 12 HELIX 9 AA9 THR C 16 ALA C 21 1 6 HELIX 10 AB1 PRO C 26 LYS C 36 1 11 HELIX 11 AB2 ALA C 45 ASN C 73 1 29 HELIX 12 AB3 ILE C 79 ASP C 90 1 12 HELIX 13 AB4 ASP C 90 LEU C 97 1 8 HELIX 14 AB5 TYR D 37 HIS D 49 1 13 HELIX 15 AB6 SER D 55 ASN D 84 1 30 HELIX 16 AB7 THR D 90 LEU D 102 1 13 HELIX 17 AB8 PRO D 103 ALA D 124 1 22 HELIX 18 AB9 GLY E 44 GLN E 55 1 12 HELIX 19 AC1 ARG E 63 ALA E 75 1 13 HELIX 20 AC2 GLN E 76 PHE E 78 5 3 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 42 1 13 HELIX 25 AC7 ILE F 50 ALA F 76 1 27 HELIX 26 AC8 THR F 82 ARG F 92 1 11 HELIX 27 AC9 THR G 16 ALA G 21 1 6 HELIX 28 AD1 PRO G 26 GLY G 37 1 12 HELIX 29 AD2 ALA G 45 ASN G 73 1 29 HELIX 30 AD3 ILE G 79 ASP G 90 1 12 HELIX 31 AD4 ASP G 90 LEU G 97 1 8 HELIX 32 AD5 TYR H 37 HIS H 49 1 13 HELIX 33 AD6 SER H 55 ASN H 84 1 30 HELIX 34 AD7 THR H 90 LEU H 102 1 13 HELIX 35 AD8 PRO H 103 ALA H 124 1 22 HELIX 36 AD9 GLU A 638 TYR A 647 1 10 HELIX 37 AE1 CYS A 668 ALA A 678 1 11 HELIX 38 AE2 LEU B 639 TYR B 647 1 9 HELIX 39 AE3 CYS B 668 ALA B 678 1 11 HELIX 40 AE4 SER B 691 ASN B 693 5 3 HELIX 41 AE5 PRO R 4 ASP R 19 1 16 HELIX 42 AE6 LEU R 89 ASN R 94 1 6 HELIX 43 AE7 ASP R 101 ASP R 115 1 15 HELIX 44 AE8 ASN R 123 HIS R 133 1 11 HELIX 45 AE9 HIS R 133 GLU R 150 1 18 SHEET 1 AA1 2 ARG K 83 PHE K 84 0 SHEET 2 AA1 2 THR L 80 VAL L 81 1 O VAL L 81 N ARG K 83 SHEET 1 AA2 2 THR K 118 ILE K 119 0 SHEET 2 AA2 2 ARG L 45 ILE L 46 1 O ARG L 45 N ILE K 119 SHEET 1 AA3 2 LEU L 97 TYR L 98 0 SHEET 2 AA3 2 THR G 101 ILE G 102 1 O THR G 101 N TYR L 98 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA6 2 VAL C 100 ILE C 102 0 SHEET 2 AA6 2 THR F 96 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 78 SHEET 1 AB2 3 VAL A 666 PHE A 667 0 SHEET 2 AB2 3 MET A 658 ILE A 660 -1 N MET A 658 O PHE A 667 SHEET 3 AB2 3 LEU A 695 THR A 697 -1 O LEU A 696 N ALA A 659 SHEET 1 AB3 3 VAL B 666 PHE B 667 0 SHEET 2 AB3 3 MET B 658 ILE B 660 -1 N MET B 658 O PHE B 667 SHEET 3 AB3 3 LEU B 695 THR B 697 -1 O LEU B 696 N ALA B 659 SHEET 1 AB4 4 VAL R 24 LEU R 29 0 SHEET 2 AB4 4 ASN R 32 ILE R 41 -1 O VAL R 35 N LEU R 29 SHEET 3 AB4 4 THR R 52 GLU R 58 -1 O LEU R 55 N ALA R 38 SHEET 4 AB4 4 HIS R 69 PHE R 72 -1 O LYS R 71 N LEU R 56 LINK SG CYS A 648 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 651 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 663 ZN ZN A 801 1555 1555 2.31 LINK ND1 HIS A 665 ZN ZN A 801 1555 1555 2.03 LINK SG CYS A 668 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 671 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 683 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 686 ZN ZN A 801 1555 1555 2.31 LINK SG CYS B 648 ZN ZN B 802 1555 1555 2.33 LINK SG CYS B 651 ZN ZN B 802 1555 1555 2.33 LINK SG CYS B 663 ZN ZN B 801 1555 1555 2.32 LINK ND1 HIS B 665 ZN ZN B 801 1555 1555 2.06 LINK SG CYS B 668 ZN ZN B 802 1555 1555 2.33 LINK SG CYS B 671 ZN ZN B 802 1555 1555 2.32 LINK SG CYS B 683 ZN ZN B 801 1555 1555 2.31 LINK SG CYS B 686 ZN ZN B 801 1555 1555 2.32 CISPEP 1 TYR R 63 PRO R 64 0 -2.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000