HEADER NUCLEAR PROTEIN 15-FEB-23 8IEJ TITLE RNF20-RNF40/HRAD6A-UB/NUCLEOSOME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 3 CHAIN: C, G; COMPND 4 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HISTONE H3.1; COMPND 13 CHAIN: E, K; COMPND 14 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 15 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 16 H3/L; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: HISTONE H4; COMPND 20 CHAIN: F, L; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 24 CHAIN: H; COMPND 25 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: DNA (147-MER); COMPND 29 CHAIN: I; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: DNA (147-MER); COMPND 33 CHAIN: J; COMPND 34 ENGINEERED: YES; COMPND 35 MOL_ID: 8; COMPND 36 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE BRE1B; COMPND 37 CHAIN: A; COMPND 38 SYNONYM: BRE1-B,95 KDA RETINOBLASTOMA-ASSOCIATED PROTEIN,RBP95,RING COMPND 39 FINGER PROTEIN 40,RING-TYPE E3 UBIQUITIN TRANSFERASE BRE1B; COMPND 40 EC: 2.3.2.27; COMPND 41 ENGINEERED: YES; COMPND 42 MOL_ID: 9; COMPND 43 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE BRE1A; COMPND 44 CHAIN: M; COMPND 45 SYNONYM: BRE1-A,HBRE1,RING FINGER PROTEIN 20,RING-TYPE E3 UBIQUITIN COMPND 46 TRANSFERASE BRE1A; COMPND 47 EC: 2.3.2.27; COMPND 48 ENGINEERED: YES; COMPND 49 MOL_ID: 10; COMPND 50 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 A; COMPND 51 CHAIN: R; COMPND 52 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME A,RAD6 HOMOLOG A,HR6A,HHR6A, COMPND 53 UBIQUITIN CARRIER PROTEIN A,UBIQUITIN-PROTEIN LIGASE A; COMPND 54 EC: 2.3.2.23; COMPND 55 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H2BC12, H2BFT, HIRIP1, HIST1H2BK; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 20 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 21 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 22 HIST1H3I, H3C12, H3FJ, HIST1H3J; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, SOURCE 30 H4/G, H4FG, HIST1H4C, H4C4, H4/B, H4FB, HIST1H4D, H4C5, H4/J, H4FJ, SOURCE 31 HIST1H4E, H4C6, H4/C, H4FC, HIST1H4F, H4C8, H4/H, H4FH, HIST1H4H, SOURCE 32 H4C9, H4/M, H4FM, HIST1H4I, H4C11, H4/E, H4FE, HIST1H4J, H4C12, SOURCE 33 H4/D, H4FD, HIST1H4K, H4C13, H4/K, H4FK, HIST1H4L, H4C14, H4/N, SOURCE 34 H4F2, H4FN, HIST2H4, HIST2H4A, H4C15, H4/O, H4FO, HIST2H4B, H4C16, SOURCE 35 H4-16, HIST4H4; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 MOL_ID: 5; SOURCE 39 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 40 ORGANISM_COMMON: HUMAN; SOURCE 41 ORGANISM_TAXID: 9606; SOURCE 42 GENE: H2BC12, H2BFT, HIRIP1, HIST1H2BK; SOURCE 43 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 44 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 45 MOL_ID: 6; SOURCE 46 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 47 ORGANISM_COMMON: HUMAN; SOURCE 48 ORGANISM_TAXID: 9606; SOURCE 49 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 50 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 51 MOL_ID: 7; SOURCE 52 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 53 ORGANISM_COMMON: HUMAN; SOURCE 54 ORGANISM_TAXID: 9606; SOURCE 55 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 56 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 57 MOL_ID: 8; SOURCE 58 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 59 ORGANISM_COMMON: HUMAN; SOURCE 60 ORGANISM_TAXID: 9606; SOURCE 61 GENE: RNF40, BRE1B, KIAA0661; SOURCE 62 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR FLAG-MCS-PCDNA3.1; SOURCE 63 EXPRESSION_SYSTEM_TAXID: 2021188; SOURCE 64 MOL_ID: 9; SOURCE 65 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 66 ORGANISM_COMMON: HUMAN; SOURCE 67 ORGANISM_TAXID: 9606; SOURCE 68 GENE: RNF20, BRE1A; SOURCE 69 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR FLAG-MCS-PCDNA3.1; SOURCE 70 EXPRESSION_SYSTEM_TAXID: 2021188; SOURCE 71 MOL_ID: 10; SOURCE 72 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 73 ORGANISM_COMMON: HUMAN; SOURCE 74 ORGANISM_TAXID: 9606; SOURCE 75 GENE: UBE2A, RAD6A; SOURCE 76 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 77 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNF20, RFN40, RAD6, NUCLEOSOME, H2BK120UB, NUCLEAR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.AI,Z.DENG,M.SUN,Y.DU,M.PAN,L.LIU REVDAT 2 20-SEP-23 8IEJ 1 JRNL REVDAT 1 06-SEP-23 8IEJ 0 JRNL AUTH Z.DENG,H.AI,M.SUN,Z.TONG,Y.DU,Q.QU,L.ZHANG,Z.XU,S.TAO,Q.SHI, JRNL AUTH 2 J.B.LI,M.PAN,L.LIU JRNL TITL MECHANISTIC INSIGHTS INTO NUCLEOSOMAL H2B MONOUBIQUITYLATION JRNL TITL 2 MEDIATED BY YEAST BRE1-RAD6 AND ITS HUMAN HOMOLOG JRNL TITL 3 RNF20/RNF40-HRAD6A. JRNL REF MOL.CELL V. 83 3080 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 37633270 JRNL DOI 10.1016/J.MOLCEL.2023.08.001 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.120 REMARK 3 NUMBER OF PARTICLES : 239429 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8IEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035507. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RNF20-RNF40/HRAD6A-UB IN REMARK 245 COMPLEX WITH NUCLEOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, G, H, I, J, K, L, REMARK 350 AND CHAINS: A, M, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS E 37 REMARK 465 LEU F 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 ARG F 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 118 CG CD CE NZ REMARK 470 GLU A 941 CG CD OE1 OE2 REMARK 470 ASN A 952 CG OD1 ND2 REMARK 470 LYS A 956 CG CD CE NZ REMARK 470 GLU A 977 CG CD OE1 OE2 REMARK 470 ILE A1000 CG1 CG2 CD1 REMARK 470 MET R 1 CG SD CE REMARK 470 ARG R 8 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 14 CG CD CE NZ REMARK 470 GLN R 17 CG CD OE1 NE2 REMARK 470 GLU R 18 CG CD OE1 OE2 REMARK 470 ASP R 19 CG OD1 OD2 REMARK 470 GLU R 30 CG CD OE1 OE2 REMARK 470 ASN R 31 CG OD1 ND2 REMARK 470 ASN R 32 CG OD1 ND2 REMARK 470 MET R 34 CG SD CE REMARK 470 PHE R 41 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU R 44 CG CD OE1 OE2 REMARK 470 ASP R 50 CG OD1 OD2 REMARK 470 GLU R 58 CG CD OE1 OE2 REMARK 470 THR R 60 OG1 CG2 REMARK 470 GLU R 61 CG CD OE1 OE2 REMARK 470 ASN R 65 CG OD1 ND2 REMARK 470 ARG R 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 75 CG CD CE NZ REMARK 470 ARG R 95 CG CD NE CZ NH1 NH2 REMARK 470 GLN R 110 CG CD OE1 NE2 REMARK 470 LEU R 112 CG CD1 CD2 REMARK 470 ASP R 114 CG OD1 OD2 REMARK 470 GLN R 131 CG CD OE1 NE2 REMARK 470 GLU R 132 CG CD OE1 OE2 REMARK 470 ASN R 133 CG OD1 ND2 REMARK 470 LYS R 134 CG CD CE NZ REMARK 470 ARG R 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU R 136 CG CD OE1 OE2 REMARK 470 LYS R 139 CG CD CE NZ REMARK 470 GLU R 146 CG CD OE1 OE2 REMARK 470 TRP R 149 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP R 149 CZ3 CH2 REMARK 470 ARG R 150 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS A 965 ZN ZN A 1102 1.40 REMARK 500 OH TYR A 999 NE2 HIS M 939 1.42 REMARK 500 OH TYR A 999 CD2 HIS M 939 1.63 REMARK 500 NH2 ARG A 979 CZ ARG A 981 1.65 REMARK 500 NH1 ARG A 997 CD2 TYR A 999 1.79 REMARK 500 NH2 ARG A 979 NH2 ARG A 981 1.96 REMARK 500 NH2 ARG A 979 NH1 ARG A 981 1.98 REMARK 500 NH2 ARG A 954 SG CYS A 971 2.10 REMARK 500 OH TYR C 50 OE1 GLN D 95 2.13 REMARK 500 OG SER R 29 O ASN R 32 2.14 REMARK 500 O TYR C 39 OG SER D 78 2.15 REMARK 500 N2 DG I -10 O2 DC J 10 2.15 REMARK 500 NH1 ARG A 997 CE2 TYR A 999 2.17 REMARK 500 O LYS A 943 OG1 THR A 947 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG G 11 -60.08 -91.79 REMARK 500 ASP A 957 24.96 -140.06 REMARK 500 LYS A 985 -60.04 -96.17 REMARK 500 ASP M 931 30.30 -143.91 REMARK 500 GLN M 954 64.79 -102.30 REMARK 500 LYS M 959 -61.98 -90.65 REMARK 500 ASP R 19 69.12 -152.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 948 SG REMARK 620 2 CYS A 968 SG 81.2 REMARK 620 3 CYS A 971 SG 144.3 80.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 963 SG REMARK 620 2 HIS A 965 NE2 73.5 REMARK 620 3 CYS A 983 SG 106.2 168.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS M 922 SG REMARK 620 2 CYS M 925 SG 107.5 REMARK 620 3 CYS M 942 SG 110.3 119.4 REMARK 620 4 CYS M 945 SG 122.0 106.7 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS M 937 SG REMARK 620 2 HIS M 939 ND1 83.0 REMARK 620 3 CYS M 957 SG 108.3 118.0 REMARK 620 4 CYS M 960 SG 110.9 123.0 109.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35383 RELATED DB: EMDB REMARK 900 RNF20-RNF40/HRAD6A-UB/NUCLEOSOME COMPLEX DBREF 8IEJ C 10 118 UNP P04908 H2A1B_HUMAN 11 119 DBREF 8IEJ D 31 124 UNP O60814 H2B1K_HUMAN 32 125 DBREF 8IEJ E 37 134 UNP P68431 H31_HUMAN 38 135 DBREF 8IEJ F 22 101 UNP P62805 H4_HUMAN 23 102 DBREF 8IEJ G 10 118 UNP P04908 H2A1B_HUMAN 11 119 DBREF 8IEJ H 31 124 UNP O60814 H2B1K_HUMAN 32 125 DBREF 8IEJ I -73 73 PDB 8IEJ 8IEJ -73 73 DBREF 8IEJ J -73 73 PDB 8IEJ 8IEJ -73 73 DBREF 8IEJ K 37 134 UNP P68431 H31_HUMAN 38 135 DBREF 8IEJ L 22 101 UNP P62805 H4_HUMAN 23 102 DBREF 8IEJ A 941 1000 UNP O75150 BRE1B_HUMAN 941 1000 DBREF 8IEJ M 915 974 UNP Q5VTR2 BRE1A_HUMAN 915 974 DBREF 8IEJ R 1 150 UNP P49459 UBE2A_HUMAN 1 150 SEQADV 8IEJ CYS D 120 UNP O60814 LYS 121 CONFLICT SEQRES 1 C 109 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 2 C 109 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 3 C 109 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 4 C 109 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 5 C 109 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 6 C 109 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 C 109 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 8 C 109 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 9 C 109 VAL LEU LEU PRO LYS SEQRES 1 D 94 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 D 94 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 D 94 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 D 94 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 D 94 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 D 94 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 D 94 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR CYS TYR SEQRES 8 D 94 THR SER ALA SEQRES 1 E 98 LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG SEQRES 2 E 98 GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE SEQRES 3 E 98 ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA SEQRES 4 E 98 GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA SEQRES 5 E 98 VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL SEQRES 6 E 98 GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA SEQRES 7 E 98 LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA SEQRES 8 E 98 ARG ARG ILE ARG GLY GLU ARG SEQRES 1 F 80 LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE SEQRES 2 F 80 ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER SEQRES 3 F 80 GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL SEQRES 4 F 80 PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR SEQRES 5 F 80 GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL SEQRES 6 F 80 VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY SEQRES 7 F 80 PHE GLY SEQRES 1 G 109 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 2 G 109 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 3 G 109 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 4 G 109 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 5 G 109 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 6 G 109 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 G 109 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 8 G 109 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 9 G 109 VAL LEU LEU PRO LYS SEQRES 1 H 94 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 H 94 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 H 94 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 H 94 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 H 94 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 H 94 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 H 94 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 H 94 THR SER ALA SEQRES 1 I 147 DA DC DA DG DG DA DT DG DT DA DT DA DT SEQRES 2 I 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 I 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 I 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 I 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 I 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 I 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 I 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 I 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 I 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 I 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 I 147 DC DC DA DG SEQRES 1 J 147 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 147 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 147 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 147 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 147 DC DT DG DT SEQRES 1 K 98 LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG SEQRES 2 K 98 GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE SEQRES 3 K 98 ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA SEQRES 4 K 98 GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA SEQRES 5 K 98 VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL SEQRES 6 K 98 GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA SEQRES 7 K 98 LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA SEQRES 8 K 98 ARG ARG ILE ARG GLY GLU ARG SEQRES 1 L 80 LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE SEQRES 2 L 80 ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER SEQRES 3 L 80 GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL SEQRES 4 L 80 PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR SEQRES 5 L 80 GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL SEQRES 6 L 80 VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY SEQRES 7 L 80 PHE GLY SEQRES 1 A 60 GLU TYR LYS ALA ARG LEU THR CYS PRO CYS CYS ASN THR SEQRES 2 A 60 ARG LYS LYS ASP ALA VAL LEU THR LYS CYS PHE HIS VAL SEQRES 3 A 60 PHE CYS PHE GLU CYS VAL ARG GLY ARG TYR GLU ALA ARG SEQRES 4 A 60 GLN ARG LYS CYS PRO LYS CYS ASN ALA ALA PHE GLY ALA SEQRES 5 A 60 HIS ASP PHE HIS ARG ILE TYR ILE SEQRES 1 M 60 ASP TYR LYS ALA ARG LEU THR CYS PRO CYS CYS ASN MET SEQRES 2 M 60 ARG LYS LYS ASP ALA VAL LEU THR LYS CYS PHE HIS VAL SEQRES 3 M 60 PHE CYS PHE GLU CYS VAL LYS THR ARG TYR ASP THR ARG SEQRES 4 M 60 GLN ARG LYS CYS PRO LYS CYS ASN ALA ALA PHE GLY ALA SEQRES 5 M 60 ASN ASP PHE HIS ARG ILE TYR ILE SEQRES 1 R 150 MET SER THR PRO ALA ARG ARG ARG LEU MET ARG ASP PHE SEQRES 2 R 150 LYS ARG LEU GLN GLU ASP PRO PRO ALA GLY VAL SER GLY SEQRES 3 R 150 ALA PRO SER GLU ASN ASN ILE MET VAL TRP ASN ALA VAL SEQRES 4 R 150 ILE PHE GLY PRO GLU GLY THR PRO PHE GLU ASP GLY THR SEQRES 5 R 150 PHE LYS LEU THR ILE GLU PHE THR GLU GLU TYR PRO ASN SEQRES 6 R 150 LYS PRO PRO THR VAL ARG PHE VAL SER LYS MET PHE HIS SEQRES 7 R 150 PRO ASN VAL TYR ALA ASP GLY SER ILE CYS LEU ASP ILE SEQRES 8 R 150 LEU GLN ASN ARG TRP SER PRO THR TYR ASP VAL SER SER SEQRES 9 R 150 ILE LEU THR SER ILE GLN SER LEU LEU ASP GLU PRO ASN SEQRES 10 R 150 PRO ASN SER PRO ALA ASN SER GLN ALA ALA GLN LEU TYR SEQRES 11 R 150 GLN GLU ASN LYS ARG GLU TYR GLU LYS ARG VAL SER ALA SEQRES 12 R 150 ILE VAL GLU GLN SER TRP ARG HET ZN A1101 1 HET ZN A1102 1 HET ZN M1001 1 HET ZN M1002 1 HETNAM ZN ZINC ION FORMUL 14 ZN 4(ZN 2+) HELIX 1 AA1 THR C 16 ALA C 21 1 6 HELIX 2 AA2 PRO C 26 GLY C 37 1 12 HELIX 3 AA3 ALA C 45 ASN C 73 1 29 HELIX 4 AA4 ILE C 79 ASP C 90 1 12 HELIX 5 AA5 ASP C 90 LEU C 97 1 8 HELIX 6 AA6 TYR D 37 HIS D 49 1 13 HELIX 7 AA7 SER D 55 ASN D 84 1 30 HELIX 8 AA8 THR D 90 LEU D 102 1 13 HELIX 9 AA9 GLY D 104 ALA D 124 1 21 HELIX 10 AB1 GLY E 44 GLN E 55 1 12 HELIX 11 AB2 ARG E 63 GLN E 76 1 14 HELIX 12 AB3 GLN E 85 ALA E 114 1 30 HELIX 13 AB4 MET E 120 ARG E 131 1 12 HELIX 14 AB5 ASP F 24 ILE F 29 5 6 HELIX 15 AB6 THR F 30 GLY F 42 1 13 HELIX 16 AB7 LEU F 49 ALA F 76 1 28 HELIX 17 AB8 THR F 82 ARG F 92 1 11 HELIX 18 AB9 THR G 16 GLY G 22 1 7 HELIX 19 AC1 PRO G 26 GLY G 37 1 12 HELIX 20 AC2 ALA G 45 LYS G 74 1 30 HELIX 21 AC3 ILE G 79 ASP G 90 1 12 HELIX 22 AC4 ASP G 90 LEU G 97 1 8 HELIX 23 AC5 TYR H 37 HIS H 49 1 13 HELIX 24 AC6 SER H 55 ASN H 84 1 30 HELIX 25 AC7 THR H 90 LEU H 102 1 13 HELIX 26 AC8 PRO H 103 ALA H 124 1 22 HELIX 27 AC9 GLY K 44 GLN K 55 1 12 HELIX 28 AD1 ARG K 63 GLN K 76 1 14 HELIX 29 AD2 GLN K 85 ALA K 114 1 30 HELIX 30 AD3 MET K 120 GLY K 132 1 13 HELIX 31 AD4 ASN L 25 ILE L 29 5 5 HELIX 32 AD5 THR L 30 GLY L 41 1 12 HELIX 33 AD6 LEU L 49 ALA L 76 1 28 HELIX 34 AD7 THR L 82 GLN L 93 1 12 HELIX 35 AD8 TYR A 942 THR A 947 1 6 HELIX 36 AD9 PHE A 969 ALA A 978 1 10 HELIX 37 AE1 TYR M 916 LEU M 920 1 5 HELIX 38 AE2 CYS M 942 THR M 952 1 11 HELIX 39 AE3 THR R 3 ASP R 19 1 17 HELIX 40 AE4 LEU R 89 ASN R 94 1 6 HELIX 41 AE5 ASP R 101 GLU R 115 1 15 HELIX 42 AE6 ASN R 123 ASN R 133 1 11 HELIX 43 AE7 ASN R 133 TRP R 149 1 17 SHEET 1 AA1 2 ARG C 42 VAL C 43 0 SHEET 2 AA1 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA2 2 ARG C 77 ILE C 78 0 SHEET 2 AA2 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA3 2 VAL C 100 ILE C 102 0 SHEET 2 AA3 2 THR F 96 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA4 2 ARG E 83 PHE E 84 0 SHEET 2 AA4 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA5 2 THR E 118 ILE E 119 0 SHEET 2 AA5 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA6 2 ARG G 42 VAL G 43 0 SHEET 2 AA6 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AA7 2 ARG G 77 ILE G 78 0 SHEET 2 AA7 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 78 SHEET 1 AA8 2 THR G 101 ILE G 102 0 SHEET 2 AA8 2 LEU L 97 TYR L 98 1 O TYR L 98 N THR G 101 SHEET 1 AA9 2 ARG K 83 PHE K 84 0 SHEET 2 AA9 2 THR L 80 VAL L 81 1 O VAL L 81 N ARG K 83 SHEET 1 AB1 2 THR K 118 ILE K 119 0 SHEET 2 AB1 2 ARG L 45 ILE L 46 1 O ARG L 45 N ILE K 119 SHEET 1 AB2 3 VAL A 966 PHE A 967 0 SHEET 2 AB2 3 ALA A 958 LEU A 960 -1 N ALA A 958 O PHE A 967 SHEET 3 AB2 3 PHE A 995 ARG A 997 -1 O HIS A 996 N VAL A 959 SHEET 1 AB3 3 HIS M 939 PHE M 941 0 SHEET 2 AB3 3 ALA M 932 LEU M 934 -1 N LEU M 934 O HIS M 939 SHEET 3 AB3 3 PHE M 969 ARG M 971 -1 O HIS M 970 N VAL M 933 SHEET 1 AB4 4 VAL R 24 PRO R 28 0 SHEET 2 AB4 4 VAL R 35 PHE R 41 -1 O ASN R 37 N ALA R 27 SHEET 3 AB4 4 THR R 52 GLU R 58 -1 O LEU R 55 N ALA R 38 SHEET 4 AB4 4 THR R 69 PHE R 72 -1 O ARG R 71 N THR R 56 LINK SG CYS A 948 ZN ZN A1101 1555 1555 2.05 LINK SG CYS A 963 ZN ZN A1102 1555 1555 2.89 LINK NE2 HIS A 965 ZN ZN A1102 1555 1555 2.30 LINK SG CYS A 968 ZN ZN A1101 1555 1555 2.68 LINK SG CYS A 971 ZN ZN A1101 1555 1555 2.36 LINK SG CYS A 983 ZN ZN A1102 1555 1555 2.82 LINK SG CYS M 922 ZN ZN M1001 1555 1555 2.33 LINK SG CYS M 925 ZN ZN M1001 1555 1555 2.32 LINK SG CYS M 937 ZN ZN M1002 1555 1555 2.31 LINK ND1 HIS M 939 ZN ZN M1002 1555 1555 2.05 LINK SG CYS M 942 ZN ZN M1001 1555 1555 2.32 LINK SG CYS M 945 ZN ZN M1001 1555 1555 2.32 LINK SG CYS M 957 ZN ZN M1002 1555 1555 2.30 LINK SG CYS M 960 ZN ZN M1002 1555 1555 2.31 CISPEP 1 TYR R 63 PRO R 64 0 2.70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000