HEADER TRANSCRIPTION 19-FEB-23 8IFO TITLE CRYSTAL STRUCTURE OF ESTROGEN RELATED RECEPTOR-GAMMA DNA BINDING TITLE 2 DOMAIN COMPLEXED WITH PLA2G12B PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN-RELATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B, F; COMPND 4 SYNONYM: ERR GAMMA-2,ESTROGEN RECEPTOR-RELATED PROTEIN 3,NUCLEAR COMPND 5 RECEPTOR SUBFAMILY 3 GROUP B MEMBER 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*GP*AP*GP*GP*AP*CP*AP*AP*AP*GP*GP*TP*GP*AP*AP*AP*C)-3'); COMPND 10 CHAIN: C, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*GP*TP*TP*TP*CP*AP*CP*CP*TP*TP*TP*GP*TP*CP*CP*TP*C)-3'); COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESRRG, ERR3, ERRG2, KIAA0832, NR3B3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS NUCLEAR RECEPTOR, ERR3, PLA2G12B, DR1, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.XU,X.ZHEN,J.LIU REVDAT 2 01-MAY-24 8IFO 1 JRNL REVDAT 1 29-MAR-23 8IFO 0 JRNL AUTH X.ZHEN,Q.GAN,L.QU,Y.DONG,C.PAN,J.LIU,N.WANG,T.XU JRNL TITL ERR GAMMA-DBD UNDERGOES DIMERIZATION AND CONFORMATIONAL JRNL TITL 2 REARRANGEMENT UPON BINDING TO THE DOWNSTREAM SITE OF THE DR1 JRNL TITL 3 ELEMENT. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 656 16 2023 JRNL REFN ESSN 1090-2104 JRNL PMID 36944284 JRNL DOI 10.1016/J.BBRC.2023.03.038 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1813 REMARK 3 NUCLEIC ACID ATOMS : 1382 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.96000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : -7.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3402 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2576 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4842 ; 1.651 ; 1.420 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6005 ; 1.443 ; 2.018 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;31.662 ;18.646 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;18.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2860 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 929 ; 0.991 ; 1.948 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 928 ; 0.988 ; 1.948 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1156 ; 1.633 ; 2.916 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1157 ; 1.633 ; 2.917 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2473 ; 3.173 ; 4.119 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2472 ; 3.174 ; 4.118 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3686 ; 4.285 ; 6.231 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4107 ; 6.478 ;35.883 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4098 ; 6.475 ;35.795 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 5 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 2138 0.11 0.05 REMARK 3 2 A F 2102 0.12 0.05 REMARK 3 3 B F 2193 0.09 0.05 REMARK 3 4 C G 1605 0.06 0.05 REMARK 3 5 D H 1424 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4757 -25.8377 19.7254 REMARK 3 T TENSOR REMARK 3 T11: 0.6177 T22: 0.3983 REMARK 3 T33: 0.5870 T12: -0.1586 REMARK 3 T13: 0.0194 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 8.0172 L22: 6.9245 REMARK 3 L33: 12.6299 L12: 1.2178 REMARK 3 L13: -2.1557 L23: -3.2840 REMARK 3 S TENSOR REMARK 3 S11: -0.3202 S12: 0.1148 S13: -0.5114 REMARK 3 S21: -0.2697 S22: 0.2436 S23: 0.0558 REMARK 3 S31: 1.8715 S32: -0.7812 S33: 0.0766 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8731 -5.3821 44.9455 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.3619 REMARK 3 T33: 0.5277 T12: 0.0554 REMARK 3 T13: -0.0388 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 4.8014 L22: 4.6695 REMARK 3 L33: 7.0115 L12: 0.2980 REMARK 3 L13: -2.2823 L23: 0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.1750 S12: -0.1031 S13: 0.0296 REMARK 3 S21: 0.1308 S22: -0.0664 S23: 0.2907 REMARK 3 S31: -0.0647 S32: -0.2080 S33: -0.1086 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 124 F 200 REMARK 3 ORIGIN FOR THE GROUP (A): -28.1612 -25.5193 4.6357 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.3323 REMARK 3 T33: 0.5084 T12: -0.0426 REMARK 3 T13: -0.0105 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.5792 L22: 5.8942 REMARK 3 L33: 9.6051 L12: -0.4364 REMARK 3 L13: 0.8636 L23: -1.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 0.2547 S13: 0.0023 REMARK 3 S21: 0.0736 S22: -0.1906 S23: 0.2863 REMARK 3 S31: 0.1511 S32: -0.2131 S33: 0.0715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 53.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 6.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.21700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.21700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 123 REMARK 465 PRO A 124 REMARK 465 ASP A 201 REMARK 465 ARG A 202 REMARK 465 VAL A 203 REMARK 465 ARG A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 ARG A 207 REMARK 465 GLN A 208 REMARK 465 LYS A 209 REMARK 465 TYR A 210 REMARK 465 LYS A 211 REMARK 465 ARG A 212 REMARK 465 ARG A 213 REMARK 465 ILE A 214 REMARK 465 ASP A 215 REMARK 465 ALA A 216 REMARK 465 GLU A 217 REMARK 465 ASN A 218 REMARK 465 SER A 219 REMARK 465 LEU A 220 REMARK 465 GLU A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 MET B 123 REMARK 465 ARG B 204 REMARK 465 GLY B 205 REMARK 465 GLY B 206 REMARK 465 ARG B 207 REMARK 465 GLN B 208 REMARK 465 LYS B 209 REMARK 465 TYR B 210 REMARK 465 LYS B 211 REMARK 465 ARG B 212 REMARK 465 ARG B 213 REMARK 465 ILE B 214 REMARK 465 ASP B 215 REMARK 465 ALA B 216 REMARK 465 GLU B 217 REMARK 465 ASN B 218 REMARK 465 SER B 219 REMARK 465 LEU B 220 REMARK 465 GLU B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 MET F 123 REMARK 465 ASP F 201 REMARK 465 ARG F 202 REMARK 465 VAL F 203 REMARK 465 ARG F 204 REMARK 465 GLY F 205 REMARK 465 GLY F 206 REMARK 465 ARG F 207 REMARK 465 GLN F 208 REMARK 465 LYS F 209 REMARK 465 TYR F 210 REMARK 465 LYS F 211 REMARK 465 ARG F 212 REMARK 465 ARG F 213 REMARK 465 ILE F 214 REMARK 465 ASP F 215 REMARK 465 ALA F 216 REMARK 465 GLU F 217 REMARK 465 ASN F 218 REMARK 465 SER F 219 REMARK 465 LEU F 220 REMARK 465 GLU F 221 REMARK 465 HIS F 222 REMARK 465 HIS F 223 REMARK 465 HIS F 224 REMARK 465 HIS F 225 REMARK 465 HIS F 226 REMARK 465 HIS F 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 402 O HOH A 406 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 154 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 CYS F 148 CB - CA - C ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 166 -129.38 -88.68 REMARK 500 ALA B 166 -128.08 -94.17 REMARK 500 ALA F 166 -125.17 -91.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 131 SG 110.9 REMARK 620 3 CYS A 145 SG 113.0 105.3 REMARK 620 4 CYS A 148 SG 109.1 109.9 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 CYS A 170 SG 106.3 REMARK 620 3 CYS A 180 SG 124.2 103.2 REMARK 620 4 CYS A 183 SG 116.4 91.1 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 128 SG REMARK 620 2 CYS B 131 SG 109.6 REMARK 620 3 CYS B 145 SG 110.8 107.0 REMARK 620 4 CYS B 148 SG 109.3 109.6 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 CYS B 170 SG 103.5 REMARK 620 3 CYS B 180 SG 115.1 119.8 REMARK 620 4 CYS B 183 SG 109.7 104.0 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 128 SG REMARK 620 2 CYS F 131 SG 111.0 REMARK 620 3 CYS F 145 SG 115.5 107.9 REMARK 620 4 CYS F 148 SG 111.3 105.8 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 164 SG REMARK 620 2 CYS F 170 SG 99.3 REMARK 620 3 CYS F 180 SG 112.0 120.5 REMARK 620 4 CYS F 183 SG 111.0 103.4 109.9 REMARK 620 N 1 2 3 DBREF 8IFO A 123 219 UNP P62508 ERR3_HUMAN 123 219 DBREF 8IFO B 123 219 UNP P62508 ERR3_HUMAN 123 219 DBREF 8IFO C 1 17 PDB 8IFO 8IFO 1 17 DBREF 8IFO D 1 17 PDB 8IFO 8IFO 1 17 DBREF 8IFO F 123 219 UNP P62508 ERR3_HUMAN 123 219 DBREF 8IFO G 1 17 PDB 8IFO 8IFO 1 17 DBREF 8IFO H 1 17 PDB 8IFO 8IFO 1 17 SEQADV 8IFO LEU A 220 UNP P62508 EXPRESSION TAG SEQADV 8IFO GLU A 221 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 222 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 223 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 224 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 225 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 226 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS A 227 UNP P62508 EXPRESSION TAG SEQADV 8IFO LEU B 220 UNP P62508 EXPRESSION TAG SEQADV 8IFO GLU B 221 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 222 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 223 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 224 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 225 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 226 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS B 227 UNP P62508 EXPRESSION TAG SEQADV 8IFO LEU F 220 UNP P62508 EXPRESSION TAG SEQADV 8IFO GLU F 221 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 222 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 223 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 224 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 225 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 226 UNP P62508 EXPRESSION TAG SEQADV 8IFO HIS F 227 UNP P62508 EXPRESSION TAG SEQRES 1 A 105 MET PRO LYS ARG LEU CYS LEU VAL CYS GLY ASP ILE ALA SEQRES 2 A 105 SER GLY TYR HIS TYR GLY VAL ALA SER CYS GLU ALA CYS SEQRES 3 A 105 LYS ALA PHE PHE LYS ARG THR ILE GLN GLY ASN ILE GLU SEQRES 4 A 105 TYR SER CYS PRO ALA THR ASN GLU CYS GLU ILE THR LYS SEQRES 5 A 105 ARG ARG ARG LYS SER CYS GLN ALA CYS ARG PHE MET LYS SEQRES 6 A 105 CYS LEU LYS VAL GLY MET LEU LYS GLU GLY VAL ARG LEU SEQRES 7 A 105 ASP ARG VAL ARG GLY GLY ARG GLN LYS TYR LYS ARG ARG SEQRES 8 A 105 ILE ASP ALA GLU ASN SER LEU GLU HIS HIS HIS HIS HIS SEQRES 9 A 105 HIS SEQRES 1 B 105 MET PRO LYS ARG LEU CYS LEU VAL CYS GLY ASP ILE ALA SEQRES 2 B 105 SER GLY TYR HIS TYR GLY VAL ALA SER CYS GLU ALA CYS SEQRES 3 B 105 LYS ALA PHE PHE LYS ARG THR ILE GLN GLY ASN ILE GLU SEQRES 4 B 105 TYR SER CYS PRO ALA THR ASN GLU CYS GLU ILE THR LYS SEQRES 5 B 105 ARG ARG ARG LYS SER CYS GLN ALA CYS ARG PHE MET LYS SEQRES 6 B 105 CYS LEU LYS VAL GLY MET LEU LYS GLU GLY VAL ARG LEU SEQRES 7 B 105 ASP ARG VAL ARG GLY GLY ARG GLN LYS TYR LYS ARG ARG SEQRES 8 B 105 ILE ASP ALA GLU ASN SER LEU GLU HIS HIS HIS HIS HIS SEQRES 9 B 105 HIS SEQRES 1 C 17 DG DA DG DG DA DC DA DA DA DG DG DT DG SEQRES 2 C 17 DA DA DA DC SEQRES 1 D 17 DG DT DT DT DC DA DC DC DT DT DT DG DT SEQRES 2 D 17 DC DC DT DC SEQRES 1 F 105 MET PRO LYS ARG LEU CYS LEU VAL CYS GLY ASP ILE ALA SEQRES 2 F 105 SER GLY TYR HIS TYR GLY VAL ALA SER CYS GLU ALA CYS SEQRES 3 F 105 LYS ALA PHE PHE LYS ARG THR ILE GLN GLY ASN ILE GLU SEQRES 4 F 105 TYR SER CYS PRO ALA THR ASN GLU CYS GLU ILE THR LYS SEQRES 5 F 105 ARG ARG ARG LYS SER CYS GLN ALA CYS ARG PHE MET LYS SEQRES 6 F 105 CYS LEU LYS VAL GLY MET LEU LYS GLU GLY VAL ARG LEU SEQRES 7 F 105 ASP ARG VAL ARG GLY GLY ARG GLN LYS TYR LYS ARG ARG SEQRES 8 F 105 ILE ASP ALA GLU ASN SER LEU GLU HIS HIS HIS HIS HIS SEQRES 9 F 105 HIS SEQRES 1 G 17 DG DA DG DG DA DC DA DA DA DG DG DT DG SEQRES 2 G 17 DA DA DA DC SEQRES 1 H 17 DG DT DT DT DC DA DC DC DT DT DT DG DT SEQRES 2 H 17 DC DC DT DC HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN B 301 1 HET ZN B 302 1 HET MLI B 303 7 HET MLI C 101 7 HET ZN F 301 1 HET ZN F 302 1 HET MLI F 303 7 HETNAM ZN ZINC ION HETNAM MLI MALONATE ION FORMUL 8 ZN 7(ZN 2+) FORMUL 13 MLI 3(C3 H2 O4 2-) FORMUL 18 HOH *87(H2 O) HELIX 1 AA1 CYS A 145 GLY A 158 1 14 HELIX 2 AA2 THR A 173 ARG A 177 5 5 HELIX 3 AA3 CYS A 180 GLY A 192 1 13 HELIX 4 AA4 LEU A 194 VAL A 198 5 5 HELIX 5 AA5 CYS B 145 GLY B 158 1 14 HELIX 6 AA6 ARG B 176 SER B 179 5 4 HELIX 7 AA7 CYS B 180 GLY B 192 1 13 HELIX 8 AA8 LEU B 194 VAL B 198 5 5 HELIX 9 AA9 CYS F 145 GLY F 158 1 14 HELIX 10 AB1 ARG F 176 SER F 179 5 4 HELIX 11 AB2 CYS F 180 GLY F 192 1 13 HELIX 12 AB3 LEU F 194 VAL F 198 5 5 SHEET 1 AA1 2 GLY A 137 HIS A 139 0 SHEET 2 AA1 2 VAL A 142 SER A 144 -1 O VAL A 142 N HIS A 139 SHEET 1 AA2 2 GLY B 137 HIS B 139 0 SHEET 2 AA2 2 VAL B 142 SER B 144 -1 O VAL B 142 N HIS B 139 SHEET 1 AA3 2 GLY F 137 HIS F 139 0 SHEET 2 AA3 2 VAL F 142 SER F 144 -1 O VAL F 142 N HIS F 139 LINK SG CYS A 128 ZN ZN A 301 1555 1555 2.34 LINK SG CYS A 131 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 145 ZN ZN A 301 1555 1555 2.40 LINK SG CYS A 148 ZN ZN A 301 1555 1555 2.23 LINK SG CYS A 164 ZN ZN A 302 1555 1555 2.13 LINK SG CYS A 170 ZN ZN A 302 1555 1555 2.53 LINK SG CYS A 180 ZN ZN A 302 1555 1555 2.43 LINK SG CYS A 183 ZN ZN A 302 1555 1555 2.47 LINK SG CYS B 128 ZN ZN B 302 1555 1555 2.34 LINK SG CYS B 131 ZN ZN B 302 1555 1555 2.31 LINK SG CYS B 145 ZN ZN B 302 1555 1555 2.34 LINK SG CYS B 148 ZN ZN B 302 1555 1555 2.28 LINK SG CYS B 164 ZN ZN B 301 1555 1555 2.44 LINK SG CYS B 170 ZN ZN B 301 1555 1555 2.18 LINK SG CYS B 180 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 183 ZN ZN B 301 1555 1555 2.43 LINK SG CYS F 128 ZN ZN F 302 1555 1555 2.30 LINK SG CYS F 131 ZN ZN F 302 1555 1555 2.33 LINK SG CYS F 145 ZN ZN F 302 1555 1555 2.32 LINK SG CYS F 148 ZN ZN F 302 1555 1555 2.23 LINK SG CYS F 164 ZN ZN F 301 1555 1555 2.49 LINK SG CYS F 170 ZN ZN F 301 1555 1555 2.31 LINK SG CYS F 180 ZN ZN F 301 1555 1555 2.25 LINK SG CYS F 183 ZN ZN F 301 1555 1555 2.31 CRYST1 77.403 74.434 111.020 90.00 104.98 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012919 0.000000 0.003457 0.00000 SCALE2 0.000000 0.013435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009324 0.00000