HEADER VIRAL PROTEIN 19-FEB-23 8IFP TITLE SARS-COV-2 3CL PROTEASE (3CLPRO) IN COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MPRO, VIRAL PROTEIN-INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,W.F.ZHAO,H.XIE,T.Q.NIE,M.J.LI,Y.C.XU REVDAT 3 08-MAY-24 8IFP 1 JRNL REVDAT 2 01-MAY-24 8IFP 1 JRNL REVDAT 1 18-OCT-23 8IFP 0 JRNL AUTH X.JIANG,H.SU,W.SHANG,F.ZHOU,Y.ZHANG,W.ZHAO,Q.ZHANG,H.XIE, JRNL AUTH 2 L.JIANG,T.NIE,F.YANG,M.XIONG,X.HUANG,M.LI,P.CHEN,S.PENG, JRNL AUTH 3 G.XIAO,H.JIANG,R.TANG,L.ZHANG,J.SHEN,Y.XU JRNL TITL STRUCTURE-BASED DEVELOPMENT AND PRECLINICAL EVALUATION OF JRNL TITL 2 THE SARS-COV-2 3C-LIKE PROTEASE INHIBITOR SIMNOTRELVIR. JRNL REF NAT COMMUN V. 14 6463 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37833261 JRNL DOI 10.1038/S41467-023-42102-Y REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 28734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3700 - 3.9500 1.00 2787 153 0.1706 0.1828 REMARK 3 2 3.9500 - 3.1400 0.99 2640 144 0.2150 0.2262 REMARK 3 3 3.1400 - 2.7400 1.00 2601 152 0.2413 0.2600 REMARK 3 4 2.7400 - 2.4900 1.00 2612 142 0.2638 0.3156 REMARK 3 5 2.4900 - 2.3100 1.00 2568 161 0.2649 0.2900 REMARK 3 6 2.3100 - 2.1800 0.74 1880 114 0.2997 0.3928 REMARK 3 7 2.1800 - 2.0700 1.00 2593 142 0.2689 0.2749 REMARK 3 8 2.0700 - 1.9800 1.00 2590 115 0.3155 0.3629 REMARK 3 9 1.9800 - 1.9000 0.78 2008 96 0.6181 0.7426 REMARK 3 10 1.9000 - 1.8400 0.94 2429 126 0.4774 0.5691 REMARK 3 11 1.8400 - 1.7800 1.00 2525 156 0.4189 0.4352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2384 REMARK 3 ANGLE : 0.615 3257 REMARK 3 CHIRALITY : 0.044 377 REMARK 3 PLANARITY : 0.005 420 REMARK 3 DIHEDRAL : 11.424 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8781 9.5548 15.6177 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.1626 REMARK 3 T33: 0.1793 T12: -0.0111 REMARK 3 T13: -0.0285 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.6736 L22: 0.9760 REMARK 3 L33: 1.8166 L12: -0.0073 REMARK 3 L13: -0.5223 L23: 0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.1720 S13: 0.0756 REMARK 3 S21: -0.0520 S22: 0.0198 S23: -0.0736 REMARK 3 S31: -0.0879 S32: -0.0461 S33: 0.0444 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4646 22.5363 15.2153 REMARK 3 T TENSOR REMARK 3 T11: 0.4310 T22: 0.4196 REMARK 3 T33: 0.3830 T12: -0.1573 REMARK 3 T13: -0.0059 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 0.7152 L22: 1.4657 REMARK 3 L33: 2.1959 L12: 0.2701 REMARK 3 L13: -0.2710 L23: 1.1308 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.0879 S13: -0.0518 REMARK 3 S21: 0.0527 S22: 0.0878 S23: -0.5556 REMARK 3 S31: -0.3085 S32: 0.1844 S33: -0.2496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6708 15.9867 9.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2312 REMARK 3 T33: 0.1859 T12: -0.0068 REMARK 3 T13: -0.0282 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 0.3061 L22: 0.9500 REMARK 3 L33: 1.9617 L12: 0.4706 REMARK 3 L13: -0.1313 L23: -0.0709 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.1096 S13: 0.0567 REMARK 3 S21: -0.2809 S22: 0.0296 S23: 0.0175 REMARK 3 S31: -0.2297 S32: 0.0559 S33: 0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1802 13.8611 26.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1434 REMARK 3 T33: 0.1772 T12: -0.0032 REMARK 3 T13: -0.0327 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1261 L22: 1.0389 REMARK 3 L33: 1.9777 L12: 0.1583 REMARK 3 L13: -1.3124 L23: -0.2486 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0628 S13: 0.1863 REMARK 3 S21: 0.0148 S22: -0.0191 S23: -0.0025 REMARK 3 S31: -0.0583 S32: 0.0062 S33: 0.0475 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8826 10.9748 44.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.2037 REMARK 3 T33: 0.1762 T12: 0.0352 REMARK 3 T13: -0.0150 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.2398 L22: 2.3236 REMARK 3 L33: 1.6333 L12: 0.5399 REMARK 3 L13: 0.1075 L23: 0.0657 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: -0.2690 S13: 0.1281 REMARK 3 S21: 0.2905 S22: 0.0368 S23: -0.0557 REMARK 3 S31: -0.0785 S32: 0.0650 S33: -0.0093 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3509 6.2587 32.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.1933 REMARK 3 T33: 0.1782 T12: 0.0115 REMARK 3 T13: 0.0243 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.2568 L22: 1.8960 REMARK 3 L33: 3.8983 L12: -0.7236 REMARK 3 L13: 0.2616 L23: -1.4947 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: 0.4154 S13: -0.3501 REMARK 3 S21: -0.0881 S22: 0.1420 S23: -0.0793 REMARK 3 S31: 0.3358 S32: 0.4807 S33: -0.0934 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5394 3.8596 21.4088 REMARK 3 T TENSOR REMARK 3 T11: 0.3879 T22: 0.6159 REMARK 3 T33: 0.1605 T12: 0.1271 REMARK 3 T13: -0.0495 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 1.9999 REMARK 3 L33: 1.9999 L12: 2.0000 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: -1.0499 S12: 0.1638 S13: -0.4313 REMARK 3 S21: 0.1952 S22: 0.2200 S23: -0.5044 REMARK 3 S31: 1.5649 S32: -0.4576 S33: 0.8230 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 105.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH5.5-6.5, 10%-25% REMARK 280 PEG6000, 3% DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 22.83900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.71350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.83900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.71350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 24 OG1 CG2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASN A 142 CG OD1 ND2 REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 169 OG1 CG2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ASN A 277 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 145 C11 OZ6 A 401 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -122.83 52.71 REMARK 500 ASN A 51 74.33 -158.37 REMARK 500 ASN A 84 -118.44 56.62 REMARK 500 TYR A 154 -101.47 60.04 REMARK 500 THR A 169 42.92 79.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 8IFP A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN HET OZ6 A 401 36 HETNAM OZ6 (1R,2S,5S)-3-[(2S)-2-(TERT-BUTYLCARBAMOYLAMINO)-3,3- HETNAM 2 OZ6 DIMETHYL-BUTANOYL]-6,6-DIMETHYL-N-[(2S)-1- HETNAM 3 OZ6 OXIDANYLIDENE-3-[(3S)-2-OXIDANYLIDENEPYRROLIDIN-3- HETNAM 4 OZ6 YL]PROPAN-2-YL]-3-AZABICYCLO[3.1.0]HEXANE-2- HETNAM 5 OZ6 CARBOXAMIDE FORMUL 2 OZ6 C26 H43 N5 O5 FORMUL 3 HOH *191(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 GLY A 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 LEU A 167 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 LEU A 167 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 VAL A 171 THR A 175 -1 O VAL A 171 N LEU A 167 CRYST1 45.678 63.427 105.590 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009471 0.00000