HEADER TRANSFERASE 20-FEB-23 8IFX TITLE AQUIFEX AEOLICUS TSAD-TSAB IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N6-L-THREONYLCARBAMOYLADENINE SYNTHASE,T(6)A SYNTHASE,T(6) COMPND 5 A37 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAD,TRNA COMPND 6 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAD; COMPND 7 EC: 2.3.1.234; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GCP-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: TSAB; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: TSAD, GCP, AQ_801; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 9 ORGANISM_TAXID: 63363; SOURCE 10 GENE: AQ_082; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA T6A-MODIFYING ENZYME, TSAD-TSAB COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Z.LU,W.H.ZHANG REVDAT 1 20-MAR-24 8IFX 0 JRNL AUTH S.Z.LU,W.H.ZHANG JRNL TITL CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS TSAD-TSAB IN COMPLEX JRNL TITL 2 WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 49098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6400 - 5.2300 0.99 2791 143 0.1832 0.2183 REMARK 3 2 5.2300 - 4.1600 0.99 2648 145 0.1565 0.1826 REMARK 3 3 4.1600 - 3.6300 0.99 2633 119 0.1665 0.1871 REMARK 3 4 3.6300 - 3.3000 0.99 2658 127 0.1936 0.2549 REMARK 3 5 3.3000 - 3.0600 0.98 2599 107 0.2061 0.2604 REMARK 3 6 3.0600 - 2.8800 0.97 2534 160 0.2458 0.3024 REMARK 3 7 2.8800 - 2.7400 0.97 2555 121 0.2248 0.2647 REMARK 3 8 2.7400 - 2.6200 0.98 2561 128 0.2353 0.2897 REMARK 3 9 2.6200 - 2.5200 0.98 2582 149 0.2354 0.2504 REMARK 3 10 2.5200 - 2.4300 0.98 2548 121 0.2399 0.3132 REMARK 3 11 2.4300 - 2.3600 0.98 2583 110 0.2436 0.2943 REMARK 3 12 2.3600 - 2.2900 0.99 2581 156 0.2494 0.3000 REMARK 3 13 2.2900 - 2.2300 0.98 2559 116 0.2539 0.2292 REMARK 3 14 2.2300 - 2.1700 0.99 2571 156 0.2543 0.3360 REMARK 3 15 2.1700 - 2.1300 0.99 2547 160 0.2584 0.3152 REMARK 3 16 2.1300 - 2.0800 1.00 2617 132 0.2883 0.3818 REMARK 3 17 2.0800 - 2.0400 1.00 2566 151 0.2758 0.2966 REMARK 3 18 2.0400 - 2.0000 0.99 2488 176 0.3097 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4241 REMARK 3 ANGLE : 0.970 5749 REMARK 3 CHIRALITY : 0.056 644 REMARK 3 PLANARITY : 0.010 725 REMARK 3 DIHEDRAL : 11.346 585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : CU FILTER REMARK 200 OPTICS : CMF REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 1.1.11 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.12.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 84.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17500 REMARK 200 FOR THE DATA SET : 18.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MG/ML TSAD-TSAB, 5 MM ATP, 5MM REMARK 280 MGCL2, 0.1 M MES PH 6.5, 30 % PEG 300, 200 MM NACL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.81067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.62133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.62133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.81067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.81067 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 488 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 ASN A 225 REMARK 465 VAL A 226 REMARK 465 TYR B 196 REMARK 465 HIS B 197 REMARK 465 VAL B 198 REMARK 465 LYS B 199 REMARK 465 ASP B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 34 CG1 CG2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 TYR A 193 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 THR A 214 OG1 CG2 REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 ASN A 218 CG OD1 ND2 REMARK 470 LEU A 219 CG CD1 CD2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 612 O HOH A 637 2.15 REMARK 500 O2' ADP A 402 O HOH A 501 2.17 REMARK 500 O HOH B 484 O HOH B 496 2.17 REMARK 500 O1 PEG B 301 O HOH B 401 2.17 REMARK 500 O HOH A 664 O HOH B 539 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 496 O HOH B 529 6555 2.10 REMARK 500 O HOH A 610 O HOH A 620 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 177 C - N - CD ANGL. DEV. = -27.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 33.23 -142.91 REMARK 500 CSO A 10 -99.84 -135.94 REMARK 500 ASN A 27 109.97 -170.52 REMARK 500 THR A 81 157.04 179.71 REMARK 500 ASP A 158 -97.81 -149.48 REMARK 500 LEU A 174 -21.89 -145.35 REMARK 500 LYS A 190 -53.21 76.13 REMARK 500 ASN A 218 8.63 -66.96 REMARK 500 ASN A 324 88.16 -155.63 REMARK 500 ILE B 106 78.33 -116.74 REMARK 500 PHE B 161 77.01 -151.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 176 PRO A 177 99.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CSO A 10 -10.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 684 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B 553 DISTANCE = 6.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 115 NE2 100.5 REMARK 620 3 ASP A 296 OD1 88.3 102.9 REMARK 620 4 ADP A 402 O1B 105.6 143.8 102.4 REMARK 620 5 ADP A 402 O1A 173.2 79.8 85.1 77.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8IEY RELATED DB: PDB REMARK 900 APO-FORM TSAD-TSAB DBREF 8IFX A 1 335 UNP O66986 TSAD_AQUAE 1 335 DBREF 8IFX B 1 200 UNP O66494 O66494_AQUAE 1 200 SEQRES 1 A 335 MET ARG THR LEU ALA VAL GLU THR SER CSO ASP GLU THR SEQRES 2 A 335 ALA LEU ALA ILE TYR ASP ASP GLN LYS GLY VAL LEU GLY SEQRES 3 A 335 ASN VAL ILE LEU SER GLN ALA VAL VAL HIS SER PRO PHE SEQRES 4 A 335 GLY GLY VAL VAL PRO GLU LEU SER ALA ARG GLU HIS THR SEQRES 5 A 335 ARG ASN ILE LEU PRO ILE PHE ASP ARG LEU LEU LYS GLU SEQRES 6 A 335 SER ARG ILE ASN LEU GLU GLU ILE ASP PHE ILE SER PHE SEQRES 7 A 335 THR LEU THR PRO GLY LEU ILE LEU SER LEU VAL VAL GLY SEQRES 8 A 335 VAL ALA PHE ALA LYS ALA LEU ALA TYR GLU TYR ARG LYS SEQRES 9 A 335 PRO LEU VAL PRO VAL HIS HIS LEU GLU GLY HIS ILE TYR SEQRES 10 A 335 SER VAL PHE LEU GLU LYS LYS VAL GLU TYR PRO PHE LEU SEQRES 11 A 335 ALA LEU ILE ILE SER GLY GLY HIS THR ASP LEU TYR LEU SEQRES 12 A 335 VAL ARG ASP PHE GLY ARG TYR ASP PHE LEU GLY GLY THR SEQRES 13 A 335 LEU ASP ASP ALA VAL GLY GLU ALA TYR ASP LYS VAL ALA SEQRES 14 A 335 LYS MET LEU GLY LEU GLY TYR PRO GLY GLY PRO ILE ILE SEQRES 15 A 335 ASP ARG LEU ALA LYS GLU GLY LYS LYS LEU TYR PRO LEU SEQRES 16 A 335 PRO LYS PRO LEU MET GLU GLU GLY ASN LEU ASN PHE SER SEQRES 17 A 335 PHE SER GLY LEU LYS THR ALA ILE LEU ASN LEU LEU LYS SEQRES 18 A 335 LYS GLU LYS ASN VAL ARG LYS GLU ASP ILE ALA TYR SER SEQRES 19 A 335 PHE GLN GLU THR VAL VAL GLU ILE LEU LEU GLU LYS SER SEQRES 20 A 335 LEU TRP ALA MET LYS LYS THR GLY ILE LYS ARG LEU VAL SEQRES 21 A 335 VAL VAL GLY GLY VAL SER ALA ASN SER ARG LEU ARG GLU SEQRES 22 A 335 VAL PHE LYS LYS ALA SER GLN GLU TYR GLY PHE GLU LEU SEQRES 23 A 335 TYR ILE PRO HIS PRO SER LEU SER THR ASP ASN ALA LEU SEQRES 24 A 335 MET ILE ALA TYR ALA GLY MET GLU ARG PHE LYS ARG GLY SEQRES 25 A 335 VAL VAL ALA PRO LEU ASP VAL ASN PRO GLN PRO ASN ILE SEQRES 26 A 335 PRO LEU GLU GLU PHE GLY ARG ILE TRP THR SEQRES 1 B 200 MET LYS ILE LEU SER ILE ASP THR SER PHE SER PHE ILE SEQRES 2 B 200 ASN PHE SER VAL ILE GLU GLU GLU LYS VAL THR PHE LEU SEQRES 3 B 200 HIS TYR LEU LYS SER ASN LYS LYS THR LEU GLU LEU LEU SEQRES 4 B 200 PRO LYS ILE PHE GLU GLU LEU CYS ILE ARG PRO GLU ASN SEQRES 5 B 200 PHE ASP ALA PHE ALA VAL SER VAL GLY VAL GLY TYR LEU SEQRES 6 B 200 THR SER LEU ARG ILE GLY VAL THR PHE VAL LYS THR TRP SEQRES 7 B 200 ALA TYR THR LEU GLY LYS PRO VAL VAL SER TYR LYS ASN SEQRES 8 B 200 LEU GLU LEU LEU ALA LYS LYS THR PRO VAL PRO PHE PRO SEQRES 9 B 200 LYS ILE PRO TYR LEU LYS VAL GLY SER ASN VAL PHE TYR SEQRES 10 B 200 GLN ILE PHE GLU GLU SER SER SER SER GLU VAL LYS VAL SEQRES 11 B 200 PHE LYS GLY GLU GLU LEU ARG GLY TYR GLY ILE SER LEU SEQRES 12 B 200 LYS GLU PHE GLU ASP ILE LYS LEU GLY GLU LYS GLN PHE SEQRES 13 B 200 PHE HIS ASP ILE PHE PRO PHE SER ALA TYR GLY GLY ILE SEQRES 14 B 200 TYR ALA TYR GLU PHE LEU LYS GLU ASN PRO GLU GLY GLU SEQRES 15 B 200 ASN VAL PHE GLU ILE GLU PRO ILE TYR VAL LYS PRO PRO SEQRES 16 B 200 TYR HIS VAL LYS ASP MODRES 8IFX CSO A 10 CYS MODIFIED RESIDUE HET CSO A 10 7 HET FE A 401 1 HET ADP A 402 27 HET PEG A 403 7 HET PEG A 404 7 HET PEG B 301 7 HETNAM CSO S-HYDROXYCYSTEINE HETNAM FE FE (III) ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 FE FE 3+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *337(H2 O) HELIX 1 AA1 GLN A 32 SER A 37 1 6 HELIX 2 AA2 PRO A 38 GLY A 40 5 3 HELIX 3 AA3 VAL A 43 ARG A 67 1 25 HELIX 4 AA4 ASN A 69 ILE A 73 5 5 HELIX 5 AA5 LEU A 84 ARG A 103 1 20 HELIX 6 AA6 HIS A 111 SER A 118 1 8 HELIX 7 AA7 VAL A 119 GLU A 122 5 4 HELIX 8 AA8 ALA A 160 LEU A 172 1 13 HELIX 9 AA9 PRO A 177 LYS A 187 1 11 HELIX 10 AB1 GLY A 211 ASN A 218 1 8 HELIX 11 AB2 LYS A 228 GLY A 255 1 28 HELIX 12 AB3 GLY A 263 ALA A 267 5 5 HELIX 13 AB4 ASN A 268 GLY A 283 1 16 HELIX 14 AB5 HIS A 290 THR A 295 1 6 HELIX 15 AB6 ALA A 298 ARG A 311 1 14 HELIX 16 AB7 PRO A 326 TRP A 334 1 9 HELIX 17 AB8 LYS B 34 LEU B 39 1 6 HELIX 18 AB9 PRO B 40 LEU B 46 1 7 HELIX 19 AC1 ARG B 49 PHE B 53 5 5 HELIX 20 AC2 TYR B 64 GLY B 83 1 20 HELIX 21 AC3 LYS B 90 LYS B 98 1 9 HELIX 22 AC4 GLU B 145 GLU B 147 5 3 HELIX 23 AC5 PRO B 162 ASN B 178 1 17 HELIX 24 AC6 ASN B 183 ILE B 187 5 5 SHEET 1 AA1 5 GLY A 23 SER A 31 0 SHEET 2 AA1 5 GLU A 12 ASP A 19 -1 N LEU A 15 O VAL A 28 SHEET 3 AA1 5 ARG A 2 GLU A 7 -1 N ALA A 5 O ALA A 16 SHEET 4 AA1 5 PHE A 75 THR A 81 1 O SER A 77 N LEU A 4 SHEET 5 AA1 5 LEU A 106 HIS A 110 1 O VAL A 109 N LEU A 80 SHEET 1 AA2 5 ARG A 149 GLY A 154 0 SHEET 2 AA2 5 THR A 139 ASP A 146 -1 N LEU A 143 O ASP A 151 SHEET 3 AA2 5 PHE A 129 ILE A 134 -1 N ALA A 131 O TYR A 142 SHEET 4 AA2 5 ARG A 258 VAL A 262 1 O VAL A 260 N LEU A 132 SHEET 5 AA2 5 GLU A 285 TYR A 287 1 O GLU A 285 N LEU A 259 SHEET 1 AA3 5 LYS B 22 LYS B 30 0 SHEET 2 AA3 5 PHE B 12 GLU B 19 -1 N ILE B 13 O LEU B 29 SHEET 3 AA3 5 LYS B 2 ASP B 7 -1 N SER B 5 O SER B 16 SHEET 4 AA3 5 ALA B 55 SER B 59 1 O ALA B 57 N ILE B 6 SHEET 5 AA3 5 VAL B 86 TYR B 89 1 O VAL B 87 N PHE B 56 SHEET 1 AA4 5 LYS B 129 VAL B 130 0 SHEET 2 AA4 5 ASN B 114 TYR B 117 -1 N TYR B 117 O LYS B 129 SHEET 3 AA4 5 LYS B 105 VAL B 111 -1 N VAL B 111 O ASN B 114 SHEET 4 AA4 5 TYR B 139 LEU B 143 1 O TYR B 139 N ILE B 106 SHEET 5 AA4 5 GLN B 155 HIS B 158 1 O HIS B 158 N SER B 142 LINK C SER A 9 N CSO A 10 1555 1555 1.33 LINK C CSO A 10 N ASP A 11 1555 1555 1.33 LINK NE2 HIS A 111 FE FE A 401 1555 1555 2.24 LINK NE2 HIS A 115 FE FE A 401 1555 1555 2.11 LINK OD1 ASP A 296 FE FE A 401 1555 1555 1.98 LINK FE FE A 401 O1B ADP A 402 1555 1555 1.76 LINK FE FE A 401 O1A ADP A 402 1555 1555 2.64 CISPEP 1 THR A 81 PRO A 82 0 -12.42 CISPEP 2 TYR A 127 PRO A 128 0 -1.93 CISPEP 3 LEU B 39 PRO B 40 0 0.63 CISPEP 4 GLY B 61 VAL B 62 0 7.65 CISPEP 5 PHE B 103 PRO B 104 0 -4.27 CRYST1 98.017 98.017 131.432 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010202 0.005890 0.000000 0.00000 SCALE2 0.000000 0.011781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007608 0.00000