HEADER HYDROLASE 22-FEB-23 8IHE TITLE RV1122(GND2) IN MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 6-PHOSPHOGLUCONATE DEHYDROGENASE,DECARBOXYLATING COMPND 3 GND2; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 GENE: GND2, RV1122; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, TETRAMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.CHEN,D.SU REVDAT 1 28-FEB-24 8IHE 0 JRNL AUTH Y.J.CHEN,D.SU JRNL TITL RV1122(GND2) IN MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.452 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.388 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10057 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 9478 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13628 ; 1.658 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21762 ; 1.218 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1304 ; 7.790 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 541 ;36.413 ;20.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1592 ;20.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 96 ;19.517 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1279 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11615 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2329 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5240 ; 7.375 ; 7.678 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5239 ; 7.375 ; 7.677 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6536 ;11.362 ;11.490 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6537 ;11.362 ;11.490 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4817 ; 6.669 ; 8.075 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4818 ; 6.668 ; 8.075 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7093 ;10.370 ;11.951 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11242 ;15.312 ;89.522 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11243 ;15.311 ;89.519 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 0.2M AMMONIUM SULPHATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.99550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.51150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.62300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.51150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.99550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.62300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -207.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 220 REMARK 465 GLN A 221 REMARK 465 HIS A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 ALA A 225 REMARK 465 GLU A 226 REMARK 465 VAL B 220 REMARK 465 GLN B 221 REMARK 465 HIS B 222 REMARK 465 GLY B 223 REMARK 465 ASP B 224 REMARK 465 ALA B 225 REMARK 465 GLU B 226 REMARK 465 THR B 227 REMARK 465 GLY B 332 REMARK 465 GLY B 333 REMARK 465 HIS B 334 REMARK 465 ALA B 335 REMARK 465 GLU B 336 REMARK 465 LYS B 337 REMARK 465 PRO B 338 REMARK 465 ALA B 339 REMARK 465 ASN B 340 REMARK 465 GLN C 221 REMARK 465 HIS C 222 REMARK 465 GLY C 223 REMARK 465 ASP C 224 REMARK 465 ALA C 225 REMARK 465 GLU C 226 REMARK 465 PRO C 338 REMARK 465 ALA C 339 REMARK 465 ASN C 340 REMARK 465 GLN D 221 REMARK 465 HIS D 222 REMARK 465 GLY D 223 REMARK 465 ASP D 224 REMARK 465 ALA D 225 REMARK 465 GLU D 226 REMARK 465 GLY D 332 REMARK 465 GLY D 333 REMARK 465 HIS D 334 REMARK 465 ALA D 335 REMARK 465 GLU D 336 REMARK 465 LYS D 337 REMARK 465 PRO D 338 REMARK 465 ALA D 339 REMARK 465 ASN D 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 43 OG1 THR B 45 2.00 REMARK 500 O PRO C 148 OG1 THR C 152 2.05 REMARK 500 OD2 ASP D 102 ND1 HIS D 187 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 279 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 38.57 -145.70 REMARK 500 TYR A 29 140.03 168.67 REMARK 500 HIS A 31 -73.15 -13.04 REMARK 500 THR A 46 70.22 -179.61 REMARK 500 VAL A 48 -156.51 -91.72 REMARK 500 ALA A 49 18.53 -171.80 REMARK 500 ASP A 89 -176.81 -60.50 REMARK 500 ARG A 166 99.65 -54.01 REMARK 500 SER A 173 -52.33 -26.33 REMARK 500 PRO A 182 -177.77 -61.48 REMARK 500 TYR A 236 66.07 -100.67 REMARK 500 ASP A 239 62.49 -114.22 REMARK 500 SER A 270 81.68 -159.79 REMARK 500 LEU A 273 32.02 34.61 REMARK 500 LYS A 329 -70.65 -63.41 REMARK 500 MET B 5 111.38 -168.91 REMARK 500 MET B 11 -87.34 -84.59 REMARK 500 LYS B 21 -8.52 -57.83 REMARK 500 VAL B 27 79.85 -119.90 REMARK 500 TYR B 29 131.02 -177.41 REMARK 500 HIS B 31 -66.49 -26.65 REMARK 500 LYS B 37 -74.34 -66.46 REMARK 500 ALA B 60 145.52 -34.78 REMARK 500 GLU B 86 -121.32 -106.30 REMARK 500 ASN B 96 60.12 -100.25 REMARK 500 LYS B 112 16.64 -148.47 REMARK 500 ASP B 118 108.65 -59.51 REMARK 500 ARG B 166 95.79 -66.83 REMARK 500 PRO B 182 -170.72 -66.75 REMARK 500 SER B 185 -34.20 -23.69 REMARK 500 ASN B 232 75.89 69.30 REMARK 500 ASP B 239 78.97 -102.95 REMARK 500 LYS B 329 38.27 -81.39 REMARK 500 GLN B 330 -59.63 -155.34 REMARK 500 MET C 39 51.58 -107.81 REMARK 500 THR C 46 119.92 -166.12 REMARK 500 ALA C 49 35.65 -146.88 REMARK 500 SER C 50 159.34 176.35 REMARK 500 ARG C 57 33.86 -94.77 REMARK 500 THR C 84 -47.44 166.34 REMARK 500 ASN C 96 59.21 -102.33 REMARK 500 SER C 122 -146.29 -99.97 REMARK 500 ALA C 154 154.35 -48.00 REMARK 500 VAL C 157 -39.72 -35.59 REMARK 500 PRO C 164 106.64 -51.94 REMARK 500 PRO C 182 178.56 -55.72 REMARK 500 PRO C 229 96.81 -65.25 REMARK 500 LEU C 230 109.36 -49.87 REMARK 500 TYR C 236 72.86 -110.46 REMARK 500 SER C 283 -70.50 -34.57 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 167 GLY A 168 149.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 8IHE A 1 340 UNP O06574 O06574_MYCTU 1 340 DBREF 8IHE B 1 340 UNP O06574 O06574_MYCTU 1 340 DBREF 8IHE C 1 340 UNP O06574 O06574_MYCTU 1 340 DBREF 8IHE D 1 340 UNP O06574 O06574_MYCTU 1 340 SEQRES 1 A 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 A 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 A 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 A 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 A 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 A 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 A 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 A 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 A 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 A 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 A 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 A 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 A 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 A 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 A 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 A 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 A 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 A 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 A 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 A 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 A 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 A 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 A 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 A 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 A 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 A 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 A 340 ALA ASN SEQRES 1 B 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 B 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 B 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 B 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 B 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 B 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 B 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 B 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 B 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 B 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 B 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 B 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 B 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 B 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 B 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 B 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 B 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 B 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 B 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 B 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 B 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 B 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 B 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 B 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 B 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 B 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 B 340 ALA ASN SEQRES 1 C 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 C 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 C 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 C 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 C 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 C 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 C 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 C 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 C 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 C 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 C 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 C 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 C 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 C 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 C 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 C 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 C 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 C 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 C 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 C 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 C 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 C 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 C 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 C 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 C 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 C 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 C 340 ALA ASN SEQRES 1 D 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 D 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 D 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 D 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 D 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 D 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 D 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 D 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 D 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 D 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 D 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 D 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 D 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 D 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 D 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 D 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 D 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 D 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 D 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 D 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 D 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 D 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 D 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 D 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 D 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 D 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 D 340 ALA ASN HELIX 1 AA1 MET A 11 GLY A 22 1 12 HELIX 2 AA2 ASP A 32 GLY A 41 1 10 HELIX 3 AA3 SER A 50 ARG A 57 1 8 HELIX 4 AA4 GLY A 71 LEU A 85 1 15 HELIX 5 AA5 TYR A 98 LEU A 109 1 12 HELIX 6 AA6 VAL A 125 GLU A 129 5 5 HELIX 7 AA7 ASP A 139 ALA A 154 1 16 HELIX 8 AA8 GLY A 156 ALA A 160 5 5 HELIX 9 AA9 ALA A 171 GLY A 176 1 6 HELIX 10 AB1 GLY A 184 ASN A 213 1 30 HELIX 11 AB2 ASP A 241 TRP A 249 1 9 HELIX 12 AB3 SER A 257 SER A 270 1 14 HELIX 13 AB4 GLY A 284 GLU A 296 1 13 HELIX 14 AB5 ALA A 300 ARG A 314 1 15 HELIX 15 AB6 ASP A 317 GLY A 333 1 17 HELIX 16 AB7 MET B 11 LYS B 21 1 11 HELIX 17 AB8 ASP B 32 GLU B 42 1 11 HELIX 18 AB9 SER B 50 ARG B 57 1 8 HELIX 19 AC1 GLY B 71 ASN B 83 1 13 HELIX 20 AC2 TYR B 98 LYS B 111 1 14 HELIX 21 AC3 GLY B 123 VAL B 125 5 3 HELIX 22 AC4 TRP B 126 GLY B 131 1 6 HELIX 23 AC5 ASP B 139 ALA B 154 1 16 HELIX 24 AC6 GLY B 156 ALA B 160 5 5 HELIX 25 AC7 PRO B 172 GLN B 175 5 4 HELIX 26 AC8 GLY B 184 ASN B 213 1 30 HELIX 27 AC9 ALA B 214 ARG B 219 5 6 HELIX 28 AD1 ASN B 232 TYR B 236 5 5 HELIX 29 AD2 ASP B 241 TRP B 249 1 9 HELIX 30 AD3 SER B 257 SER B 270 1 14 HELIX 31 AD4 GLY B 284 GLU B 296 1 13 HELIX 32 AD5 ALA B 300 SER B 313 1 14 HELIX 33 AD6 ASP B 317 LYS B 329 1 13 HELIX 34 AD7 GLY C 9 GLY C 22 1 14 HELIX 35 AD8 ASP C 32 MET C 39 1 8 HELIX 36 AD9 SER C 50 ARG C 57 1 8 HELIX 37 AE1 GLY C 71 ALA C 82 1 12 HELIX 38 AE2 TYR C 98 LYS C 111 1 14 HELIX 39 AE3 TRP C 126 GLY C 131 1 6 HELIX 40 AE4 ASP C 139 ALA C 154 1 16 HELIX 41 AE5 GLY C 156 ALA C 160 5 5 HELIX 42 AE6 ALA C 171 GLY C 176 5 6 HELIX 43 AE7 GLY C 184 ASN C 213 1 30 HELIX 44 AE8 ALA C 214 THR C 218 5 5 HELIX 45 AE9 ASN C 232 TYR C 236 5 5 HELIX 46 AF1 ASP C 241 TRP C 249 1 9 HELIX 47 AF2 SER C 257 SER C 270 1 14 HELIX 48 AF3 GLY C 284 GLU C 296 1 13 HELIX 49 AF4 ALA C 300 ARG C 314 1 15 HELIX 50 AF5 ASP C 317 GLY C 333 1 17 HELIX 51 AF6 MET D 11 HIS D 24 1 14 HELIX 52 AF7 ASP D 34 GLY D 41 1 8 HELIX 53 AF8 SER D 50 ARG D 57 1 8 HELIX 54 AF9 GLY D 71 ALA D 82 1 12 HELIX 55 AG1 TYR D 98 LYS D 112 1 15 HELIX 56 AG2 ASP D 139 ALA D 154 1 16 HELIX 57 AG3 GLY D 156 ALA D 160 5 5 HELIX 58 AG4 ALA D 171 GLY D 176 1 6 HELIX 59 AG5 GLY D 184 ASN D 213 1 30 HELIX 60 AG6 ASN D 232 TYR D 236 5 5 HELIX 61 AG7 ASP D 241 TRP D 249 1 9 HELIX 62 AG8 SER D 257 SER D 270 1 14 HELIX 63 AG9 GLY D 284 GLY D 297 1 14 HELIX 64 AH1 ALA D 300 ARG D 314 1 15 HELIX 65 AH2 ASP D 317 PHE D 331 1 15 SHEET 1 AA1 7 ASP A 25 VAL A 27 0 SHEET 2 AA1 7 GLN A 2 ILE A 6 1 N LEU A 3 O ASP A 25 SHEET 3 AA1 7 VAL A 63 VAL A 66 1 O VAL A 63 N GLY A 4 SHEET 4 AA1 7 ILE A 90 ASP A 93 1 O ILE A 92 N VAL A 66 SHEET 5 AA1 7 HIS A 115 THR A 121 1 O LEU A 117 N VAL A 91 SHEET 6 AA1 7 LEU A 134 GLY A 138 -1 O MET A 135 N GLY A 120 SHEET 7 AA1 7 TYR A 177 GLY A 181 1 O CYS A 180 N ILE A 136 SHEET 1 AA2 7 ASP B 25 VAL B 27 0 SHEET 2 AA2 7 GLN B 2 ILE B 6 1 N LEU B 3 O ASP B 25 SHEET 3 AA2 7 VAL B 63 VAL B 66 1 O VAL B 63 N GLY B 4 SHEET 4 AA2 7 ILE B 90 ASP B 93 1 O ILE B 92 N VAL B 64 SHEET 5 AA2 7 HIS B 115 THR B 121 1 O HIS B 115 N VAL B 91 SHEET 6 AA2 7 LEU B 134 GLY B 137 -1 O MET B 135 N GLY B 120 SHEET 7 AA2 7 TYR B 177 GLY B 181 1 O CYS B 180 N ILE B 136 SHEET 1 AA3 8 THR C 45 GLY C 47 0 SHEET 2 AA3 8 ASP C 25 TYR C 29 1 N VAL C 28 O THR C 46 SHEET 3 AA3 8 GLN C 2 ILE C 6 1 N LEU C 3 O VAL C 27 SHEET 4 AA3 8 VAL C 63 VAL C 66 1 O TRP C 65 N GLY C 4 SHEET 5 AA3 8 ILE C 90 ASP C 93 1 O ILE C 92 N VAL C 66 SHEET 6 AA3 8 HIS C 115 THR C 121 1 O LEU C 117 N ASP C 93 SHEET 7 AA3 8 LEU C 134 GLY C 137 -1 O MET C 135 N GLY C 120 SHEET 8 AA3 8 HIS C 179 GLY C 181 1 O CYS C 180 N ILE C 136 SHEET 1 AA4 4 THR D 45 GLY D 47 0 SHEET 2 AA4 4 ASP D 25 TYR D 29 1 N VAL D 28 O THR D 46 SHEET 3 AA4 4 GLN D 2 ILE D 6 1 N LEU D 3 O VAL D 27 SHEET 4 AA4 4 VAL D 64 VAL D 66 1 O TRP D 65 N GLY D 4 SHEET 1 AA5 4 ILE D 90 ASP D 93 0 SHEET 2 AA5 4 HIS D 115 ASP D 118 1 O LEU D 117 N ASP D 93 SHEET 3 AA5 4 LEU D 134 GLY D 138 -1 O GLY D 137 N ASP D 118 SHEET 4 AA5 4 TYR D 177 GLY D 181 1 O CYS D 180 N ILE D 136 CISPEP 1 ALA A 60 PRO A 61 0 -2.37 CISPEP 2 ALA B 60 PRO B 61 0 -5.10 CISPEP 3 ALA C 60 PRO C 61 0 -13.27 CISPEP 4 ALA D 60 PRO D 61 0 6.83 CRYST1 95.991 107.246 137.023 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007298 0.00000