HEADER OXIDOREDUCTASE 24-FEB-23 8II0 TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH (5-(3-(3-CHLOROPHENYL) TITLE 2 ISOXAZOL-5-YL)-3-HYDROXYPICOLINOYL)GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR, FIH, 2OG DEPENDENT KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,T.CORNER,X.ZHANG,C.J.SCHOFIELD REVDAT 1 28-FEB-24 8II0 0 JRNL AUTH Y.NAKASHIMA,T.CORNER,X.ZHANG,C.J.SCHOFIELD JRNL TITL A SMALL-MOLECULE FIH INHIBITOR BINDING TO A TYROSINE-FLIP JRNL TITL 2 POCKET AMELIORATES OBESITY AND MAFLD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 63379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3100 - 5.7100 1.00 2949 154 0.1719 0.2394 REMARK 3 2 5.7100 - 4.5400 1.00 2918 170 0.1587 0.2117 REMARK 3 3 4.5300 - 3.9600 1.00 2923 170 0.1558 0.1509 REMARK 3 4 3.9600 - 3.6000 1.00 2940 152 0.1794 0.3079 REMARK 3 5 3.6000 - 3.3400 1.00 2955 127 0.2082 0.1959 REMARK 3 6 3.3400 - 3.1500 1.00 2962 165 0.2435 0.2742 REMARK 3 7 3.1500 - 2.9900 1.00 2920 133 0.2454 0.2707 REMARK 3 8 2.9900 - 2.8600 1.00 2941 174 0.2463 0.2524 REMARK 3 9 2.8600 - 2.7500 1.00 2978 132 0.2480 0.2732 REMARK 3 10 2.7500 - 2.6500 1.00 2953 123 0.2601 0.2576 REMARK 3 11 2.6500 - 2.5700 1.00 2939 162 0.2473 0.2787 REMARK 3 12 2.5700 - 2.5000 1.00 2894 196 0.2446 0.2713 REMARK 3 13 2.5000 - 2.4300 1.00 2930 163 0.2547 0.2694 REMARK 3 14 2.4300 - 2.3700 1.00 2967 140 0.2689 0.3174 REMARK 3 15 2.3700 - 2.3200 1.00 2919 147 0.2881 0.3551 REMARK 3 16 2.3200 - 2.2700 1.00 2934 156 0.3150 0.3141 REMARK 3 17 2.2700 - 2.2200 1.00 2919 172 0.3251 0.3388 REMARK 3 18 2.2200 - 2.1800 1.00 2949 162 0.3606 0.3899 REMARK 3 19 2.1800 - 2.1400 0.97 2878 140 0.3874 0.3460 REMARK 3 20 2.1400 - 2.1100 0.81 2368 117 0.3918 0.3113 REMARK 3 21 2.1100 - 2.0700 0.55 1633 78 0.4409 0.3708 REMARK 3 22 2.0700 - 2.0400 0.15 463 14 0.5414 0.6881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2945 REMARK 3 ANGLE : 0.535 4013 REMARK 3 CHIRALITY : 0.043 398 REMARK 3 PLANARITY : 0.004 529 REMARK 3 DIHEDRAL : 18.486 1070 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3374 -28.1847 23.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.9951 T22: 0.8977 REMARK 3 T33: 1.1375 T12: 0.0042 REMARK 3 T13: 0.2078 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.1615 L22: 0.0243 REMARK 3 L33: 0.1508 L12: -0.0091 REMARK 3 L13: 0.0512 L23: -0.0664 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: -0.4856 S13: -0.7935 REMARK 3 S21: 0.8713 S22: 0.1540 S23: 0.0821 REMARK 3 S31: 0.3884 S32: 0.4396 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4962 -21.2357 16.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.7020 T22: 0.4416 REMARK 3 T33: 0.5569 T12: 0.0527 REMARK 3 T13: 0.1125 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.7997 L22: 1.6087 REMARK 3 L33: 1.9672 L12: -0.3619 REMARK 3 L13: -0.2915 L23: 1.7480 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: 0.0424 S13: 0.1329 REMARK 3 S21: 0.1475 S22: -0.0911 S23: 0.3386 REMARK 3 S31: -0.1166 S32: -0.1395 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6230 -28.6869 -6.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.9733 T22: 0.7506 REMARK 3 T33: 0.6491 T12: 0.0611 REMARK 3 T13: -0.0378 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 3.5753 L22: 0.7353 REMARK 3 L33: 0.6411 L12: -0.5825 REMARK 3 L13: -1.0942 L23: -0.2993 REMARK 3 S TENSOR REMARK 3 S11: 0.2417 S12: 1.2174 S13: -0.7020 REMARK 3 S21: -0.5889 S22: -0.4572 S23: -0.0877 REMARK 3 S31: -0.3054 S32: -0.2550 S33: -0.1585 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9812 -17.8888 -1.3703 REMARK 3 T TENSOR REMARK 3 T11: 1.1605 T22: 0.9375 REMARK 3 T33: 0.8934 T12: 0.2987 REMARK 3 T13: -0.1653 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 0.1220 L22: 0.2816 REMARK 3 L33: 0.2561 L12: -0.0529 REMARK 3 L13: -0.1241 L23: -0.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.5137 S13: 0.1512 REMARK 3 S21: -1.1935 S22: -0.3762 S23: 0.5042 REMARK 3 S31: -0.4253 S32: -0.2080 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1858 -27.4795 10.8971 REMARK 3 T TENSOR REMARK 3 T11: 0.5996 T22: 0.4160 REMARK 3 T33: 0.5528 T12: 0.0134 REMARK 3 T13: 0.1103 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.2484 L22: 2.0599 REMARK 3 L33: 2.2228 L12: -0.6806 REMARK 3 L13: -0.5872 L23: 1.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.1036 S13: 0.0786 REMARK 3 S21: -0.0682 S22: 0.1050 S23: 0.2473 REMARK 3 S31: -0.1898 S32: 0.0133 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8054 -42.0158 2.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.5852 T22: 0.5772 REMARK 3 T33: 0.5675 T12: -0.0257 REMARK 3 T13: 0.0569 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 1.4090 L22: 0.3375 REMARK 3 L33: 0.4073 L12: -0.4897 REMARK 3 L13: -0.0603 L23: 0.4541 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0465 S13: 0.2597 REMARK 3 S21: -0.1511 S22: 0.1283 S23: -0.3132 REMARK 3 S31: -0.2042 S32: 0.0290 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8II0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97629 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63379 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 61.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.70 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.70 REMARK 200 R MERGE FOR SHELL (I) : 4.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1 M HEPES., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.54850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.30750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.30750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.77425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.30750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.30750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.32275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.30750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.30750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.77425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.30750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.30750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.32275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.54850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 11 OG REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 298 CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1103 O HOH A 1131 2.09 REMARK 500 O HOH A 1109 O HOH A 1171 2.18 REMARK 500 O TYR A 102 NE2 GLN A 239 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 41.54 -141.82 REMARK 500 ASN A 113 40.57 -78.43 REMARK 500 ASN A 151 -153.24 -132.38 REMARK 500 THR A 153 22.02 -78.93 REMARK 500 ILE A 210 -57.92 -122.72 REMARK 500 TYR A 228 70.08 50.04 REMARK 500 ARG A 238 -1.65 78.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 113.9 REMARK 620 3 HIS A 279 NE2 91.9 86.8 REMARK 620 4 P5I A1001 N09 99.0 100.6 162.8 REMARK 620 5 P5I A1001 O01 97.8 148.0 96.4 69.1 REMARK 620 N 1 2 3 4 DBREF 8II0 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET P5I A1001 26 HET GOL A1002 6 HET GOL A1003 6 HET ZN A1004 1 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HET SO4 A1012 5 HETNAM P5I 2-[[5-[3-(3-CHLOROPHENYL)-1,2-OXAZOL-5-YL]-3-OXIDANYL- HETNAM 2 P5I PYRIDIN-2-YL]CARBONYLAMINO]ETHANOIC ACID HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETSYN P5I (5-(3-(3-CHLOROPHENYL)ISOXAZOL-5-YL)-3- HETSYN 2 P5I HYDROXYPICOLINOYL)GLYCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 P5I C17 H12 CL N3 O5 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ZN ZN 2+ FORMUL 6 SO4 8(O4 S 2-) FORMUL 14 HOH *74(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 MET A 108 5 5 HELIX 6 AA6 LYS A 124 GLY A 139 1 16 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 ARG A 177 1 12 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 LEU A 330 1 20 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 203 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 LYS A 298 -1 O ILE A 291 N LYS A 211 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N ALA A 95 O ARG A 143 SHEET 9 AA2 9 ARG A 120 MET A 123 -1 O MET A 123 N PHE A 90 LINK NE2 HIS A 199 ZN ZN A1004 1555 1555 2.09 LINK OD2 ASP A 201 ZN ZN A1004 1555 1555 2.04 LINK NE2 HIS A 279 ZN ZN A1004 1555 1555 2.15 LINK N09 P5I A1001 ZN ZN A1004 1555 1555 2.42 LINK O01 P5I A1001 ZN ZN A1004 1555 1555 2.46 CISPEP 1 TYR A 308 PRO A 309 0 3.62 CRYST1 86.615 86.615 147.097 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006798 0.00000