data_8II3 # _entry.id 8II3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8II3 pdb_00008ii3 10.2210/pdb8ii3/pdb WWPDB D_1300035760 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8II3 _pdbx_database_status.recvd_initial_deposition_date 2023-02-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Yokoyama, T.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_id_ASTM BMECEP _citation.journal_id_CSD 1200 _citation.journal_id_ISSN 1464-3391 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 90 _citation.language ? _citation.page_first 117370 _citation.page_last 117370 _citation.title 'Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bmc.2023.117370 _citation.pdbx_database_id_PubMed 37311373 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mizuguchi, M.' 1 ? primary 'Yokoyama, T.' 2 ? primary 'Okada, T.' 3 ? primary 'Nakagawa, Y.' 4 ? primary 'Fujii, K.' 5 ? primary 'Nabeshima, Y.' 6 ? primary 'Toyooka, N.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8II3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.416 _cell.length_a_esd ? _cell.length_b 85.578 _cell.length_b_esd ? _cell.length_c 63.918 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8II3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 17342.582 2 ? V30M ? ? 2 non-polymer syn '[3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone' 534.084 2 ? ? ? ? 3 water nat water 18.015 174 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ATTR,Prealbumin,TBPA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGSMASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAMHVFRKAADDTWEPFASGK TSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGSMASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAMHVFRKAADDTWEPFASGK TSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 MET n 1 14 ALA n 1 15 SER n 1 16 HIS n 1 17 ARG n 1 18 LEU n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 CYS n 1 23 LEU n 1 24 ALA n 1 25 GLY n 1 26 LEU n 1 27 VAL n 1 28 PHE n 1 29 VAL n 1 30 SER n 1 31 GLU n 1 32 ALA n 1 33 GLY n 1 34 PRO n 1 35 THR n 1 36 GLY n 1 37 THR n 1 38 GLY n 1 39 GLU n 1 40 SER n 1 41 LYS n 1 42 CYS n 1 43 PRO n 1 44 LEU n 1 45 MET n 1 46 VAL n 1 47 LYS n 1 48 VAL n 1 49 LEU n 1 50 ASP n 1 51 ALA n 1 52 VAL n 1 53 ARG n 1 54 GLY n 1 55 SER n 1 56 PRO n 1 57 ALA n 1 58 ILE n 1 59 ASN n 1 60 VAL n 1 61 ALA n 1 62 MET n 1 63 HIS n 1 64 VAL n 1 65 PHE n 1 66 ARG n 1 67 LYS n 1 68 ALA n 1 69 ALA n 1 70 ASP n 1 71 ASP n 1 72 THR n 1 73 TRP n 1 74 GLU n 1 75 PRO n 1 76 PHE n 1 77 ALA n 1 78 SER n 1 79 GLY n 1 80 LYS n 1 81 THR n 1 82 SER n 1 83 GLU n 1 84 SER n 1 85 GLY n 1 86 GLU n 1 87 LEU n 1 88 HIS n 1 89 GLY n 1 90 LEU n 1 91 THR n 1 92 THR n 1 93 GLU n 1 94 GLU n 1 95 GLU n 1 96 PHE n 1 97 VAL n 1 98 GLU n 1 99 GLY n 1 100 ILE n 1 101 TYR n 1 102 LYS n 1 103 VAL n 1 104 GLU n 1 105 ILE n 1 106 ASP n 1 107 THR n 1 108 LYS n 1 109 SER n 1 110 TYR n 1 111 TRP n 1 112 LYS n 1 113 ALA n 1 114 LEU n 1 115 GLY n 1 116 ILE n 1 117 SER n 1 118 PRO n 1 119 PHE n 1 120 HIS n 1 121 GLU n 1 122 HIS n 1 123 ALA n 1 124 GLU n 1 125 VAL n 1 126 VAL n 1 127 PHE n 1 128 THR n 1 129 ALA n 1 130 ASN n 1 131 ASP n 1 132 SER n 1 133 GLY n 1 134 PRO n 1 135 ARG n 1 136 ARG n 1 137 TYR n 1 138 THR n 1 139 ILE n 1 140 ALA n 1 141 ALA n 1 142 LEU n 1 143 LEU n 1 144 SER n 1 145 PRO n 1 146 TYR n 1 147 SER n 1 148 TYR n 1 149 SER n 1 150 THR n 1 151 THR n 1 152 ALA n 1 153 VAL n 1 154 VAL n 1 155 THR n 1 156 ASN n 1 157 PRO n 1 158 LYS n 1 159 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 159 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TTR, PALB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTT EEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8II3 A 13 ? 159 ? P02766 1 ? 147 ? -19 127 2 1 8II3 B 13 ? 159 ? P02766 1 ? 147 ? -19 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8II3 MET A 1 ? UNP P02766 ? ? 'initiating methionine' -31 1 1 8II3 ARG A 2 ? UNP P02766 ? ? 'expression tag' -30 2 1 8II3 GLY A 3 ? UNP P02766 ? ? 'expression tag' -29 3 1 8II3 SER A 4 ? UNP P02766 ? ? 'expression tag' -28 4 1 8II3 HIS A 5 ? UNP P02766 ? ? 'expression tag' -27 5 1 8II3 HIS A 6 ? UNP P02766 ? ? 'expression tag' -26 6 1 8II3 HIS A 7 ? UNP P02766 ? ? 'expression tag' -25 7 1 8II3 HIS A 8 ? UNP P02766 ? ? 'expression tag' -24 8 1 8II3 HIS A 9 ? UNP P02766 ? ? 'expression tag' -23 9 1 8II3 HIS A 10 ? UNP P02766 ? ? 'expression tag' -22 10 1 8II3 GLY A 11 ? UNP P02766 ? ? 'expression tag' -21 11 1 8II3 SER A 12 ? UNP P02766 ? ? 'expression tag' -20 12 1 8II3 MET A 62 ? UNP P02766 VAL 50 'engineered mutation' 30 13 2 8II3 MET B 1 ? UNP P02766 ? ? 'initiating methionine' -31 14 2 8II3 ARG B 2 ? UNP P02766 ? ? 'expression tag' -30 15 2 8II3 GLY B 3 ? UNP P02766 ? ? 'expression tag' -29 16 2 8II3 SER B 4 ? UNP P02766 ? ? 'expression tag' -28 17 2 8II3 HIS B 5 ? UNP P02766 ? ? 'expression tag' -27 18 2 8II3 HIS B 6 ? UNP P02766 ? ? 'expression tag' -26 19 2 8II3 HIS B 7 ? UNP P02766 ? ? 'expression tag' -25 20 2 8II3 HIS B 8 ? UNP P02766 ? ? 'expression tag' -24 21 2 8II3 HIS B 9 ? UNP P02766 ? ? 'expression tag' -23 22 2 8II3 HIS B 10 ? UNP P02766 ? ? 'expression tag' -22 23 2 8II3 GLY B 11 ? UNP P02766 ? ? 'expression tag' -21 24 2 8II3 SER B 12 ? UNP P02766 ? ? 'expression tag' -20 25 2 8II3 MET B 62 ? UNP P02766 VAL 50 'engineered mutation' 30 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PKK non-polymer . '[3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone' ? 'C17 H12 I2 O4' 534.084 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8II3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 28.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 400, CaCl2, Sodium acetate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-31 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8II3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.399 _reflns.d_resolution_low 42.79 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 47735 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.47 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.45 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4697 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.694 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.84 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8II3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.399 _refine.ls_d_res_low 42.789 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 47718 _refine.ls_number_reflns_R_free 2387 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.83 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1892 _refine.ls_R_factor_R_free 0.2117 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1880 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.01 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1771 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1991 _refine_hist.d_res_high 1.399 _refine_hist.d_res_low 42.789 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1867 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.186 ? 2551 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.728 ? 655 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.094 ? 282 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 320 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.3990 1.4276 . . 138 2612 100.00 . . . . 0.2658 . . . . . . . . . . . 0.3075 'X-RAY DIFFRACTION' 1.4276 1.4586 . . 139 2644 100.00 . . . . 0.2458 . . . . . . . . . . . 0.2580 'X-RAY DIFFRACTION' 1.4586 1.4925 . . 137 2604 100.00 . . . . 0.2288 . . . . . . . . . . . 0.2558 'X-RAY DIFFRACTION' 1.4925 1.5299 . . 138 2626 100.00 . . . . 0.2193 . . . . . . . . . . . 0.2728 'X-RAY DIFFRACTION' 1.5299 1.5712 . . 140 2645 100.00 . . . . 0.2075 . . . . . . . . . . . 0.2395 'X-RAY DIFFRACTION' 1.5712 1.6175 . . 139 2642 100.00 . . . . 0.1937 . . . . . . . . . . . 0.1979 'X-RAY DIFFRACTION' 1.6175 1.6697 . . 139 2655 100.00 . . . . 0.1894 . . . . . . . . . . . 0.2414 'X-RAY DIFFRACTION' 1.6697 1.7294 . . 140 2644 100.00 . . . . 0.1977 . . . . . . . . . . . 0.2000 'X-RAY DIFFRACTION' 1.7294 1.7986 . . 139 2643 100.00 . . . . 0.2057 . . . . . . . . . . . 0.2029 'X-RAY DIFFRACTION' 1.7986 1.8805 . . 141 2676 100.00 . . . . 0.1803 . . . . . . . . . . . 0.2626 'X-RAY DIFFRACTION' 1.8805 1.9796 . . 138 2639 100.00 . . . . 0.1715 . . . . . . . . . . . 0.2141 'X-RAY DIFFRACTION' 1.9796 2.1036 . . 140 2662 100.00 . . . . 0.1758 . . . . . . . . . . . 0.1647 'X-RAY DIFFRACTION' 2.1036 2.2660 . . 141 2676 100.00 . . . . 0.1785 . . . . . . . . . . . 0.2045 'X-RAY DIFFRACTION' 2.2660 2.4941 . . 141 2675 100.00 . . . . 0.1806 . . . . . . . . . . . 0.2012 'X-RAY DIFFRACTION' 2.4941 2.8549 . . 143 2710 100.00 . . . . 0.1986 . . . . . . . . . . . 0.2232 'X-RAY DIFFRACTION' 2.8549 3.5966 . . 144 2735 100.00 . . . . 0.1860 . . . . . . . . . . . 0.2096 'X-RAY DIFFRACTION' 3.5966 42.789 . . 150 2843 99.00 . . . . 0.1824 . . . . . . . . . . . 0.2050 # _struct.entry_id 8II3 _struct.title 'Crystal structure of V30M-TTR in complex with 6-hydroxy BID' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8II3 _struct_keywords.text 'thyroxine, amyloidosis, inhibitor, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 106 ? LEU A 114 ? ASP A 74 LEU A 82 1 ? 9 HELX_P HELX_P2 AA2 ASP B 106 ? LEU B 114 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 55 ? PRO A 56 ? SER A 23 PRO A 24 AA1 2 LEU A 44 ? ASP A 50 ? LEU A 12 ASP A 18 AA1 3 ARG A 136 ? SER A 144 ? ARG A 104 SER A 112 AA1 4 SER A 147 ? THR A 155 ? SER A 115 THR A 123 AA1 5 SER B 147 ? THR B 155 ? SER B 115 THR B 123 AA1 6 ARG B 136 ? SER B 144 ? ARG B 104 SER B 112 AA1 7 LEU B 44 ? ASP B 50 ? LEU B 12 ASP B 18 AA1 8 SER B 55 ? PRO B 56 ? SER B 23 PRO B 24 AA2 1 GLU A 86 ? LEU A 87 ? GLU A 54 LEU A 55 AA2 2 LEU A 44 ? ASP A 50 ? LEU A 12 ASP A 18 AA2 3 ARG A 136 ? SER A 144 ? ARG A 104 SER A 112 AA2 4 SER A 147 ? THR A 155 ? SER A 115 THR A 123 AA2 5 SER B 147 ? THR B 155 ? SER B 115 THR B 123 AA2 6 ARG B 136 ? SER B 144 ? ARG B 104 SER B 112 AA2 7 LEU B 44 ? ASP B 50 ? LEU B 12 ASP B 18 AA2 8 GLU B 86 ? LEU B 87 ? GLU B 54 LEU B 55 AA3 1 TRP A 73 ? LYS A 80 ? TRP A 41 LYS A 48 AA3 2 ALA A 61 ? LYS A 67 ? ALA A 29 LYS A 35 AA3 3 GLY A 99 ? ILE A 105 ? GLY A 67 ILE A 73 AA3 4 HIS A 120 ? ALA A 129 ? HIS A 88 ALA A 97 AA3 5 HIS B 120 ? ALA B 129 ? HIS B 88 ALA B 97 AA3 6 GLY B 99 ? ILE B 105 ? GLY B 67 ILE B 73 AA3 7 ALA B 61 ? LYS B 67 ? ALA B 29 LYS B 35 AA3 8 TRP B 73 ? LYS B 80 ? TRP B 41 LYS B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 55 ? O SER A 23 N ASP A 50 ? N ASP A 18 AA1 2 3 N LEU A 49 ? N LEU A 17 O LEU A 143 ? O LEU A 111 AA1 3 4 N LEU A 142 ? N LEU A 110 O SER A 149 ? O SER A 117 AA1 4 5 N THR A 150 ? N THR A 118 O TYR B 148 ? O TYR B 116 AA1 5 6 O SER B 149 ? O SER B 117 N LEU B 142 ? N LEU B 110 AA1 6 7 O LEU B 143 ? O LEU B 111 N LEU B 49 ? N LEU B 17 AA1 7 8 N ASP B 50 ? N ASP B 18 O SER B 55 ? O SER B 23 AA2 1 2 O LEU A 87 ? O LEU A 55 N VAL A 46 ? N VAL A 14 AA2 2 3 N LEU A 49 ? N LEU A 17 O LEU A 143 ? O LEU A 111 AA2 3 4 N LEU A 142 ? N LEU A 110 O SER A 149 ? O SER A 117 AA2 4 5 N THR A 150 ? N THR A 118 O TYR B 148 ? O TYR B 116 AA2 5 6 O SER B 149 ? O SER B 117 N LEU B 142 ? N LEU B 110 AA2 6 7 O LEU B 143 ? O LEU B 111 N LEU B 49 ? N LEU B 17 AA2 7 8 N VAL B 46 ? N VAL B 14 O LEU B 87 ? O LEU B 55 AA3 1 2 O ALA A 77 ? O ALA A 45 N VAL A 64 ? N VAL A 32 AA3 2 3 N HIS A 63 ? N HIS A 31 O GLU A 104 ? O GLU A 72 AA3 3 4 N ILE A 105 ? N ILE A 73 O ALA A 123 ? O ALA A 91 AA3 4 5 N GLU A 121 ? N GLU A 89 O VAL B 126 ? O VAL B 94 AA3 5 6 O ALA B 123 ? O ALA B 91 N ILE B 105 ? N ILE B 73 AA3 6 7 O GLU B 104 ? O GLU B 72 N HIS B 63 ? N HIS B 31 AA3 7 8 N VAL B 64 ? N VAL B 32 O ALA B 77 ? O ALA B 45 # _atom_sites.entry_id 8II3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023033 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015645 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -31 ? ? ? A . n A 1 2 ARG 2 -30 ? ? ? A . n A 1 3 GLY 3 -29 ? ? ? A . n A 1 4 SER 4 -28 ? ? ? A . n A 1 5 HIS 5 -27 ? ? ? A . n A 1 6 HIS 6 -26 ? ? ? A . n A 1 7 HIS 7 -25 ? ? ? A . n A 1 8 HIS 8 -24 ? ? ? A . n A 1 9 HIS 9 -23 ? ? ? A . n A 1 10 HIS 10 -22 ? ? ? A . n A 1 11 GLY 11 -21 ? ? ? A . n A 1 12 SER 12 -20 ? ? ? A . n A 1 13 MET 13 -19 ? ? ? A . n A 1 14 ALA 14 -18 ? ? ? A . n A 1 15 SER 15 -17 ? ? ? A . n A 1 16 HIS 16 -16 ? ? ? A . n A 1 17 ARG 17 -15 ? ? ? A . n A 1 18 LEU 18 -14 ? ? ? A . n A 1 19 LEU 19 -13 ? ? ? A . n A 1 20 LEU 20 -12 ? ? ? A . n A 1 21 LEU 21 -11 ? ? ? A . n A 1 22 CYS 22 -10 ? ? ? A . n A 1 23 LEU 23 -9 ? ? ? A . n A 1 24 ALA 24 -8 ? ? ? A . n A 1 25 GLY 25 -7 ? ? ? A . n A 1 26 LEU 26 -6 ? ? ? A . n A 1 27 VAL 27 -5 ? ? ? A . n A 1 28 PHE 28 -4 ? ? ? A . n A 1 29 VAL 29 -3 ? ? ? A . n A 1 30 SER 30 -2 ? ? ? A . n A 1 31 GLU 31 -1 ? ? ? A . n A 1 32 ALA 32 0 ? ? ? A . n A 1 33 GLY 33 1 ? ? ? A . n A 1 34 PRO 34 2 ? ? ? A . n A 1 35 THR 35 3 ? ? ? A . n A 1 36 GLY 36 4 ? ? ? A . n A 1 37 THR 37 5 ? ? ? A . n A 1 38 GLY 38 6 ? ? ? A . n A 1 39 GLU 39 7 ? ? ? A . n A 1 40 SER 40 8 ? ? ? A . n A 1 41 LYS 41 9 ? ? ? A . n A 1 42 CYS 42 10 10 CYS CYS A . n A 1 43 PRO 43 11 11 PRO PRO A . n A 1 44 LEU 44 12 12 LEU LEU A . n A 1 45 MET 45 13 13 MET MET A . n A 1 46 VAL 46 14 14 VAL VAL A . n A 1 47 LYS 47 15 15 LYS LYS A . n A 1 48 VAL 48 16 16 VAL VAL A . n A 1 49 LEU 49 17 17 LEU LEU A . n A 1 50 ASP 50 18 18 ASP ASP A . n A 1 51 ALA 51 19 19 ALA ALA A . n A 1 52 VAL 52 20 20 VAL VAL A . n A 1 53 ARG 53 21 21 ARG ARG A . n A 1 54 GLY 54 22 22 GLY GLY A . n A 1 55 SER 55 23 23 SER SER A . n A 1 56 PRO 56 24 24 PRO PRO A . n A 1 57 ALA 57 25 25 ALA ALA A . n A 1 58 ILE 58 26 26 ILE ILE A . n A 1 59 ASN 59 27 27 ASN ASN A . n A 1 60 VAL 60 28 28 VAL VAL A . n A 1 61 ALA 61 29 29 ALA ALA A . n A 1 62 MET 62 30 30 MET MET A . n A 1 63 HIS 63 31 31 HIS HIS A . n A 1 64 VAL 64 32 32 VAL VAL A . n A 1 65 PHE 65 33 33 PHE PHE A . n A 1 66 ARG 66 34 34 ARG ARG A . n A 1 67 LYS 67 35 35 LYS LYS A . n A 1 68 ALA 68 36 36 ALA ALA A . n A 1 69 ALA 69 37 37 ALA ALA A . n A 1 70 ASP 70 38 38 ASP ASP A . n A 1 71 ASP 71 39 39 ASP ASP A . n A 1 72 THR 72 40 40 THR THR A . n A 1 73 TRP 73 41 41 TRP TRP A . n A 1 74 GLU 74 42 42 GLU GLU A . n A 1 75 PRO 75 43 43 PRO PRO A . n A 1 76 PHE 76 44 44 PHE PHE A . n A 1 77 ALA 77 45 45 ALA ALA A . n A 1 78 SER 78 46 46 SER SER A . n A 1 79 GLY 79 47 47 GLY GLY A . n A 1 80 LYS 80 48 48 LYS LYS A . n A 1 81 THR 81 49 49 THR THR A . n A 1 82 SER 82 50 50 SER SER A . n A 1 83 GLU 83 51 51 GLU GLU A . n A 1 84 SER 84 52 52 SER SER A . n A 1 85 GLY 85 53 53 GLY GLY A . n A 1 86 GLU 86 54 54 GLU GLU A . n A 1 87 LEU 87 55 55 LEU LEU A . n A 1 88 HIS 88 56 56 HIS HIS A . n A 1 89 GLY 89 57 57 GLY GLY A . n A 1 90 LEU 90 58 58 LEU LEU A . n A 1 91 THR 91 59 59 THR THR A . n A 1 92 THR 92 60 60 THR THR A . n A 1 93 GLU 93 61 61 GLU GLU A . n A 1 94 GLU 94 62 62 GLU GLU A . n A 1 95 GLU 95 63 63 GLU GLU A . n A 1 96 PHE 96 64 64 PHE PHE A . n A 1 97 VAL 97 65 65 VAL VAL A . n A 1 98 GLU 98 66 66 GLU GLU A . n A 1 99 GLY 99 67 67 GLY GLY A . n A 1 100 ILE 100 68 68 ILE ILE A . n A 1 101 TYR 101 69 69 TYR TYR A . n A 1 102 LYS 102 70 70 LYS LYS A . n A 1 103 VAL 103 71 71 VAL VAL A . n A 1 104 GLU 104 72 72 GLU GLU A . n A 1 105 ILE 105 73 73 ILE ILE A . n A 1 106 ASP 106 74 74 ASP ASP A . n A 1 107 THR 107 75 75 THR THR A . n A 1 108 LYS 108 76 76 LYS LYS A . n A 1 109 SER 109 77 77 SER SER A . n A 1 110 TYR 110 78 78 TYR TYR A . n A 1 111 TRP 111 79 79 TRP TRP A . n A 1 112 LYS 112 80 80 LYS LYS A . n A 1 113 ALA 113 81 81 ALA ALA A . n A 1 114 LEU 114 82 82 LEU LEU A . n A 1 115 GLY 115 83 83 GLY GLY A . n A 1 116 ILE 116 84 84 ILE ILE A . n A 1 117 SER 117 85 85 SER SER A . n A 1 118 PRO 118 86 86 PRO PRO A . n A 1 119 PHE 119 87 87 PHE PHE A . n A 1 120 HIS 120 88 88 HIS HIS A . n A 1 121 GLU 121 89 89 GLU GLU A . n A 1 122 HIS 122 90 90 HIS HIS A . n A 1 123 ALA 123 91 91 ALA ALA A . n A 1 124 GLU 124 92 92 GLU GLU A . n A 1 125 VAL 125 93 93 VAL VAL A . n A 1 126 VAL 126 94 94 VAL VAL A . n A 1 127 PHE 127 95 95 PHE PHE A . n A 1 128 THR 128 96 96 THR THR A . n A 1 129 ALA 129 97 97 ALA ALA A . n A 1 130 ASN 130 98 98 ASN ASN A . n A 1 131 ASP 131 99 99 ASP ASP A . n A 1 132 SER 132 100 100 SER SER A . n A 1 133 GLY 133 101 101 GLY GLY A . n A 1 134 PRO 134 102 102 PRO PRO A . n A 1 135 ARG 135 103 103 ARG ARG A . n A 1 136 ARG 136 104 104 ARG ARG A . n A 1 137 TYR 137 105 105 TYR TYR A . n A 1 138 THR 138 106 106 THR THR A . n A 1 139 ILE 139 107 107 ILE ILE A . n A 1 140 ALA 140 108 108 ALA ALA A . n A 1 141 ALA 141 109 109 ALA ALA A . n A 1 142 LEU 142 110 110 LEU LEU A . n A 1 143 LEU 143 111 111 LEU LEU A . n A 1 144 SER 144 112 112 SER SER A . n A 1 145 PRO 145 113 113 PRO PRO A . n A 1 146 TYR 146 114 114 TYR TYR A . n A 1 147 SER 147 115 115 SER SER A . n A 1 148 TYR 148 116 116 TYR TYR A . n A 1 149 SER 149 117 117 SER SER A . n A 1 150 THR 150 118 118 THR THR A . n A 1 151 THR 151 119 119 THR THR A . n A 1 152 ALA 152 120 120 ALA ALA A . n A 1 153 VAL 153 121 121 VAL VAL A . n A 1 154 VAL 154 122 122 VAL VAL A . n A 1 155 THR 155 123 123 THR THR A . n A 1 156 ASN 156 124 124 ASN ASN A . n A 1 157 PRO 157 125 ? ? ? A . n A 1 158 LYS 158 126 ? ? ? A . n A 1 159 GLU 159 127 ? ? ? A . n B 1 1 MET 1 -31 ? ? ? B . n B 1 2 ARG 2 -30 ? ? ? B . n B 1 3 GLY 3 -29 ? ? ? B . n B 1 4 SER 4 -28 ? ? ? B . n B 1 5 HIS 5 -27 ? ? ? B . n B 1 6 HIS 6 -26 ? ? ? B . n B 1 7 HIS 7 -25 ? ? ? B . n B 1 8 HIS 8 -24 ? ? ? B . n B 1 9 HIS 9 -23 ? ? ? B . n B 1 10 HIS 10 -22 ? ? ? B . n B 1 11 GLY 11 -21 ? ? ? B . n B 1 12 SER 12 -20 ? ? ? B . n B 1 13 MET 13 -19 ? ? ? B . n B 1 14 ALA 14 -18 ? ? ? B . n B 1 15 SER 15 -17 ? ? ? B . n B 1 16 HIS 16 -16 ? ? ? B . n B 1 17 ARG 17 -15 ? ? ? B . n B 1 18 LEU 18 -14 ? ? ? B . n B 1 19 LEU 19 -13 ? ? ? B . n B 1 20 LEU 20 -12 ? ? ? B . n B 1 21 LEU 21 -11 ? ? ? B . n B 1 22 CYS 22 -10 ? ? ? B . n B 1 23 LEU 23 -9 ? ? ? B . n B 1 24 ALA 24 -8 ? ? ? B . n B 1 25 GLY 25 -7 ? ? ? B . n B 1 26 LEU 26 -6 ? ? ? B . n B 1 27 VAL 27 -5 ? ? ? B . n B 1 28 PHE 28 -4 ? ? ? B . n B 1 29 VAL 29 -3 ? ? ? B . n B 1 30 SER 30 -2 ? ? ? B . n B 1 31 GLU 31 -1 ? ? ? B . n B 1 32 ALA 32 0 ? ? ? B . n B 1 33 GLY 33 1 ? ? ? B . n B 1 34 PRO 34 2 ? ? ? B . n B 1 35 THR 35 3 ? ? ? B . n B 1 36 GLY 36 4 ? ? ? B . n B 1 37 THR 37 5 ? ? ? B . n B 1 38 GLY 38 6 ? ? ? B . n B 1 39 GLU 39 7 ? ? ? B . n B 1 40 SER 40 8 ? ? ? B . n B 1 41 LYS 41 9 ? ? ? B . n B 1 42 CYS 42 10 10 CYS CYS B . n B 1 43 PRO 43 11 11 PRO PRO B . n B 1 44 LEU 44 12 12 LEU LEU B . n B 1 45 MET 45 13 13 MET MET B . n B 1 46 VAL 46 14 14 VAL VAL B . n B 1 47 LYS 47 15 15 LYS LYS B . n B 1 48 VAL 48 16 16 VAL VAL B . n B 1 49 LEU 49 17 17 LEU LEU B . n B 1 50 ASP 50 18 18 ASP ASP B . n B 1 51 ALA 51 19 19 ALA ALA B . n B 1 52 VAL 52 20 20 VAL VAL B . n B 1 53 ARG 53 21 21 ARG ARG B . n B 1 54 GLY 54 22 22 GLY GLY B . n B 1 55 SER 55 23 23 SER SER B . n B 1 56 PRO 56 24 24 PRO PRO B . n B 1 57 ALA 57 25 25 ALA ALA B . n B 1 58 ILE 58 26 26 ILE ILE B . n B 1 59 ASN 59 27 27 ASN ASN B . n B 1 60 VAL 60 28 28 VAL VAL B . n B 1 61 ALA 61 29 29 ALA ALA B . n B 1 62 MET 62 30 30 MET MET B . n B 1 63 HIS 63 31 31 HIS HIS B . n B 1 64 VAL 64 32 32 VAL VAL B . n B 1 65 PHE 65 33 33 PHE PHE B . n B 1 66 ARG 66 34 34 ARG ARG B . n B 1 67 LYS 67 35 35 LYS LYS B . n B 1 68 ALA 68 36 36 ALA ALA B . n B 1 69 ALA 69 37 37 ALA ALA B . n B 1 70 ASP 70 38 38 ASP ASP B . n B 1 71 ASP 71 39 39 ASP ASP B . n B 1 72 THR 72 40 40 THR THR B . n B 1 73 TRP 73 41 41 TRP TRP B . n B 1 74 GLU 74 42 42 GLU GLU B . n B 1 75 PRO 75 43 43 PRO PRO B . n B 1 76 PHE 76 44 44 PHE PHE B . n B 1 77 ALA 77 45 45 ALA ALA B . n B 1 78 SER 78 46 46 SER SER B . n B 1 79 GLY 79 47 47 GLY GLY B . n B 1 80 LYS 80 48 48 LYS LYS B . n B 1 81 THR 81 49 49 THR THR B . n B 1 82 SER 82 50 50 SER SER B . n B 1 83 GLU 83 51 51 GLU GLU B . n B 1 84 SER 84 52 52 SER SER B . n B 1 85 GLY 85 53 53 GLY GLY B . n B 1 86 GLU 86 54 54 GLU GLU B . n B 1 87 LEU 87 55 55 LEU LEU B . n B 1 88 HIS 88 56 56 HIS HIS B . n B 1 89 GLY 89 57 57 GLY GLY B . n B 1 90 LEU 90 58 58 LEU LEU B . n B 1 91 THR 91 59 59 THR THR B . n B 1 92 THR 92 60 60 THR THR B . n B 1 93 GLU 93 61 61 GLU GLU B . n B 1 94 GLU 94 62 62 GLU GLU B . n B 1 95 GLU 95 63 63 GLU GLU B . n B 1 96 PHE 96 64 64 PHE PHE B . n B 1 97 VAL 97 65 65 VAL VAL B . n B 1 98 GLU 98 66 66 GLU GLU B . n B 1 99 GLY 99 67 67 GLY GLY B . n B 1 100 ILE 100 68 68 ILE ILE B . n B 1 101 TYR 101 69 69 TYR TYR B . n B 1 102 LYS 102 70 70 LYS LYS B . n B 1 103 VAL 103 71 71 VAL VAL B . n B 1 104 GLU 104 72 72 GLU GLU B . n B 1 105 ILE 105 73 73 ILE ILE B . n B 1 106 ASP 106 74 74 ASP ASP B . n B 1 107 THR 107 75 75 THR THR B . n B 1 108 LYS 108 76 76 LYS LYS B . n B 1 109 SER 109 77 77 SER SER B . n B 1 110 TYR 110 78 78 TYR TYR B . n B 1 111 TRP 111 79 79 TRP TRP B . n B 1 112 LYS 112 80 80 LYS LYS B . n B 1 113 ALA 113 81 81 ALA ALA B . n B 1 114 LEU 114 82 82 LEU LEU B . n B 1 115 GLY 115 83 83 GLY GLY B . n B 1 116 ILE 116 84 84 ILE ILE B . n B 1 117 SER 117 85 85 SER SER B . n B 1 118 PRO 118 86 86 PRO PRO B . n B 1 119 PHE 119 87 87 PHE PHE B . n B 1 120 HIS 120 88 88 HIS HIS B . n B 1 121 GLU 121 89 89 GLU GLU B . n B 1 122 HIS 122 90 90 HIS HIS B . n B 1 123 ALA 123 91 91 ALA ALA B . n B 1 124 GLU 124 92 92 GLU GLU B . n B 1 125 VAL 125 93 93 VAL VAL B . n B 1 126 VAL 126 94 94 VAL VAL B . n B 1 127 PHE 127 95 95 PHE PHE B . n B 1 128 THR 128 96 96 THR THR B . n B 1 129 ALA 129 97 97 ALA ALA B . n B 1 130 ASN 130 98 98 ASN ASN B . n B 1 131 ASP 131 99 99 ASP ASP B . n B 1 132 SER 132 100 100 SER SER B . n B 1 133 GLY 133 101 101 GLY GLY B . n B 1 134 PRO 134 102 102 PRO PRO B . n B 1 135 ARG 135 103 103 ARG ARG B . n B 1 136 ARG 136 104 104 ARG ARG B . n B 1 137 TYR 137 105 105 TYR TYR B . n B 1 138 THR 138 106 106 THR THR B . n B 1 139 ILE 139 107 107 ILE ILE B . n B 1 140 ALA 140 108 108 ALA ALA B . n B 1 141 ALA 141 109 109 ALA ALA B . n B 1 142 LEU 142 110 110 LEU LEU B . n B 1 143 LEU 143 111 111 LEU LEU B . n B 1 144 SER 144 112 112 SER SER B . n B 1 145 PRO 145 113 113 PRO PRO B . n B 1 146 TYR 146 114 114 TYR TYR B . n B 1 147 SER 147 115 115 SER SER B . n B 1 148 TYR 148 116 116 TYR TYR B . n B 1 149 SER 149 117 117 SER SER B . n B 1 150 THR 150 118 118 THR THR B . n B 1 151 THR 151 119 119 THR THR B . n B 1 152 ALA 152 120 120 ALA ALA B . n B 1 153 VAL 153 121 121 VAL VAL B . n B 1 154 VAL 154 122 122 VAL VAL B . n B 1 155 THR 155 123 123 THR THR B . n B 1 156 ASN 156 124 124 ASN ASN B . n B 1 157 PRO 157 125 ? ? ? B . n B 1 158 LYS 158 126 ? ? ? B . n B 1 159 GLU 159 127 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email tyokoya3@pha.u-toyama.ac.jp _pdbx_contact_author.name_first Takeshi _pdbx_contact_author.name_last Yokoyama _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5362-8606 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PKK 1 201 201 PKK DRG A . D 2 PKK 1 201 201 PKK DRG B . E 3 HOH 1 301 20 HOH HOH A . E 3 HOH 2 302 84 HOH HOH A . E 3 HOH 3 303 41 HOH HOH A . E 3 HOH 4 304 143 HOH HOH A . E 3 HOH 5 305 32 HOH HOH A . E 3 HOH 6 306 100 HOH HOH A . E 3 HOH 7 307 66 HOH HOH A . E 3 HOH 8 308 17 HOH HOH A . E 3 HOH 9 309 42 HOH HOH A . E 3 HOH 10 310 144 HOH HOH A . E 3 HOH 11 311 11 HOH HOH A . E 3 HOH 12 312 82 HOH HOH A . E 3 HOH 13 313 166 HOH HOH A . E 3 HOH 14 314 48 HOH HOH A . E 3 HOH 15 315 30 HOH HOH A . E 3 HOH 16 316 62 HOH HOH A . E 3 HOH 17 317 9 HOH HOH A . E 3 HOH 18 318 2 HOH HOH A . E 3 HOH 19 319 156 HOH HOH A . E 3 HOH 20 320 28 HOH HOH A . E 3 HOH 21 321 19 HOH HOH A . E 3 HOH 22 322 98 HOH HOH A . E 3 HOH 23 323 13 HOH HOH A . E 3 HOH 24 324 45 HOH HOH A . E 3 HOH 25 325 102 HOH HOH A . E 3 HOH 26 326 164 HOH HOH A . E 3 HOH 27 327 56 HOH HOH A . E 3 HOH 28 328 46 HOH HOH A . E 3 HOH 29 329 116 HOH HOH A . E 3 HOH 30 330 83 HOH HOH A . E 3 HOH 31 331 3 HOH HOH A . E 3 HOH 32 332 142 HOH HOH A . E 3 HOH 33 333 59 HOH HOH A . E 3 HOH 34 334 65 HOH HOH A . E 3 HOH 35 335 36 HOH HOH A . E 3 HOH 36 336 24 HOH HOH A . E 3 HOH 37 337 129 HOH HOH A . E 3 HOH 38 338 76 HOH HOH A . E 3 HOH 39 339 7 HOH HOH A . E 3 HOH 40 340 52 HOH HOH A . E 3 HOH 41 341 6 HOH HOH A . E 3 HOH 42 342 103 HOH HOH A . E 3 HOH 43 343 80 HOH HOH A . E 3 HOH 44 344 38 HOH HOH A . E 3 HOH 45 345 31 HOH HOH A . E 3 HOH 46 346 113 HOH HOH A . E 3 HOH 47 347 22 HOH HOH A . E 3 HOH 48 348 159 HOH HOH A . E 3 HOH 49 349 21 HOH HOH A . E 3 HOH 50 350 94 HOH HOH A . E 3 HOH 51 351 60 HOH HOH A . E 3 HOH 52 352 49 HOH HOH A . E 3 HOH 53 353 23 HOH HOH A . E 3 HOH 54 354 150 HOH HOH A . E 3 HOH 55 355 68 HOH HOH A . E 3 HOH 56 356 108 HOH HOH A . E 3 HOH 57 357 44 HOH HOH A . E 3 HOH 58 358 169 HOH HOH A . E 3 HOH 59 359 109 HOH HOH A . E 3 HOH 60 360 67 HOH HOH A . E 3 HOH 61 361 95 HOH HOH A . E 3 HOH 62 362 71 HOH HOH A . E 3 HOH 63 363 123 HOH HOH A . E 3 HOH 64 364 53 HOH HOH A . E 3 HOH 65 365 87 HOH HOH A . E 3 HOH 66 366 69 HOH HOH A . E 3 HOH 67 367 15 HOH HOH A . E 3 HOH 68 368 34 HOH HOH A . E 3 HOH 69 369 126 HOH HOH A . E 3 HOH 70 370 163 HOH HOH A . E 3 HOH 71 371 118 HOH HOH A . E 3 HOH 72 372 115 HOH HOH A . E 3 HOH 73 373 81 HOH HOH A . E 3 HOH 74 374 125 HOH HOH A . E 3 HOH 75 375 149 HOH HOH A . E 3 HOH 76 376 154 HOH HOH A . E 3 HOH 77 377 173 HOH HOH A . E 3 HOH 78 378 114 HOH HOH A . E 3 HOH 79 379 29 HOH HOH A . E 3 HOH 80 380 63 HOH HOH A . E 3 HOH 81 381 139 HOH HOH A . E 3 HOH 82 382 43 HOH HOH A . E 3 HOH 83 383 106 HOH HOH A . E 3 HOH 84 384 146 HOH HOH A . E 3 HOH 85 385 79 HOH HOH A . E 3 HOH 86 386 72 HOH HOH A . E 3 HOH 87 387 155 HOH HOH A . E 3 HOH 88 388 130 HOH HOH A . E 3 HOH 89 389 137 HOH HOH A . E 3 HOH 90 390 112 HOH HOH A . E 3 HOH 91 391 145 HOH HOH A . E 3 HOH 92 392 132 HOH HOH A . E 3 HOH 93 393 75 HOH HOH A . F 3 HOH 1 301 140 HOH HOH B . F 3 HOH 2 302 121 HOH HOH B . F 3 HOH 3 303 167 HOH HOH B . F 3 HOH 4 304 58 HOH HOH B . F 3 HOH 5 305 27 HOH HOH B . F 3 HOH 6 306 89 HOH HOH B . F 3 HOH 7 307 162 HOH HOH B . F 3 HOH 8 308 57 HOH HOH B . F 3 HOH 9 309 73 HOH HOH B . F 3 HOH 10 310 14 HOH HOH B . F 3 HOH 11 311 161 HOH HOH B . F 3 HOH 12 312 133 HOH HOH B . F 3 HOH 13 313 88 HOH HOH B . F 3 HOH 14 314 152 HOH HOH B . F 3 HOH 15 315 168 HOH HOH B . F 3 HOH 16 316 26 HOH HOH B . F 3 HOH 17 317 77 HOH HOH B . F 3 HOH 18 318 39 HOH HOH B . F 3 HOH 19 319 4 HOH HOH B . F 3 HOH 20 320 74 HOH HOH B . F 3 HOH 21 321 93 HOH HOH B . F 3 HOH 22 322 157 HOH HOH B . F 3 HOH 23 323 54 HOH HOH B . F 3 HOH 24 324 1 HOH HOH B . F 3 HOH 25 325 10 HOH HOH B . F 3 HOH 26 326 8 HOH HOH B . F 3 HOH 27 327 33 HOH HOH B . F 3 HOH 28 328 64 HOH HOH B . F 3 HOH 29 329 50 HOH HOH B . F 3 HOH 30 330 128 HOH HOH B . F 3 HOH 31 331 5 HOH HOH B . F 3 HOH 32 332 40 HOH HOH B . F 3 HOH 33 333 61 HOH HOH B . F 3 HOH 34 334 85 HOH HOH B . F 3 HOH 35 335 124 HOH HOH B . F 3 HOH 36 336 47 HOH HOH B . F 3 HOH 37 337 151 HOH HOH B . F 3 HOH 38 338 12 HOH HOH B . F 3 HOH 39 339 107 HOH HOH B . F 3 HOH 40 340 141 HOH HOH B . F 3 HOH 41 341 101 HOH HOH B . F 3 HOH 42 342 86 HOH HOH B . F 3 HOH 43 343 51 HOH HOH B . F 3 HOH 44 344 172 HOH HOH B . F 3 HOH 45 345 25 HOH HOH B . F 3 HOH 46 346 97 HOH HOH B . F 3 HOH 47 347 165 HOH HOH B . F 3 HOH 48 348 37 HOH HOH B . F 3 HOH 49 349 96 HOH HOH B . F 3 HOH 50 350 35 HOH HOH B . F 3 HOH 51 351 99 HOH HOH B . F 3 HOH 52 352 18 HOH HOH B . F 3 HOH 53 353 92 HOH HOH B . F 3 HOH 54 354 171 HOH HOH B . F 3 HOH 55 355 55 HOH HOH B . F 3 HOH 56 356 170 HOH HOH B . F 3 HOH 57 357 175 HOH HOH B . F 3 HOH 58 358 148 HOH HOH B . F 3 HOH 59 359 78 HOH HOH B . F 3 HOH 60 360 104 HOH HOH B . F 3 HOH 61 361 147 HOH HOH B . F 3 HOH 62 362 16 HOH HOH B . F 3 HOH 63 363 120 HOH HOH B . F 3 HOH 64 364 153 HOH HOH B . F 3 HOH 65 365 127 HOH HOH B . F 3 HOH 66 366 158 HOH HOH B . F 3 HOH 67 367 70 HOH HOH B . F 3 HOH 68 368 110 HOH HOH B . F 3 HOH 69 369 136 HOH HOH B . F 3 HOH 70 370 122 HOH HOH B . F 3 HOH 71 371 105 HOH HOH B . F 3 HOH 72 372 138 HOH HOH B . F 3 HOH 73 373 91 HOH HOH B . F 3 HOH 74 374 134 HOH HOH B . F 3 HOH 75 375 90 HOH HOH B . F 3 HOH 76 376 117 HOH HOH B . F 3 HOH 77 377 160 HOH HOH B . F 3 HOH 78 378 111 HOH HOH B . F 3 HOH 79 379 131 HOH HOH B . F 3 HOH 80 380 174 HOH HOH B . F 3 HOH 81 381 135 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A PKK 201 ? C PKK . 2 1 B PKK 201 ? D PKK . 3 1 A HOH 374 ? E HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 8II3 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 92 ? CG ? B GLU 124 CG 2 1 Y 1 B GLU 92 ? CD ? B GLU 124 CD 3 1 Y 1 B GLU 92 ? OE1 ? B GLU 124 OE1 4 1 Y 1 B GLU 92 ? OE2 ? B GLU 124 OE2 5 1 Y 1 B ARG 103 ? CD ? B ARG 135 CD 6 1 Y 1 B ARG 103 ? NE ? B ARG 135 NE 7 1 Y 1 B ARG 103 ? CZ ? B ARG 135 CZ 8 1 Y 1 B ARG 103 ? NH1 ? B ARG 135 NH1 9 1 Y 1 B ARG 103 ? NH2 ? B ARG 135 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -31 ? A MET 1 2 1 Y 1 A ARG -30 ? A ARG 2 3 1 Y 1 A GLY -29 ? A GLY 3 4 1 Y 1 A SER -28 ? A SER 4 5 1 Y 1 A HIS -27 ? A HIS 5 6 1 Y 1 A HIS -26 ? A HIS 6 7 1 Y 1 A HIS -25 ? A HIS 7 8 1 Y 1 A HIS -24 ? A HIS 8 9 1 Y 1 A HIS -23 ? A HIS 9 10 1 Y 1 A HIS -22 ? A HIS 10 11 1 Y 1 A GLY -21 ? A GLY 11 12 1 Y 1 A SER -20 ? A SER 12 13 1 Y 1 A MET -19 ? A MET 13 14 1 Y 1 A ALA -18 ? A ALA 14 15 1 Y 1 A SER -17 ? A SER 15 16 1 Y 1 A HIS -16 ? A HIS 16 17 1 Y 1 A ARG -15 ? A ARG 17 18 1 Y 1 A LEU -14 ? A LEU 18 19 1 Y 1 A LEU -13 ? A LEU 19 20 1 Y 1 A LEU -12 ? A LEU 20 21 1 Y 1 A LEU -11 ? A LEU 21 22 1 Y 1 A CYS -10 ? A CYS 22 23 1 Y 1 A LEU -9 ? A LEU 23 24 1 Y 1 A ALA -8 ? A ALA 24 25 1 Y 1 A GLY -7 ? A GLY 25 26 1 Y 1 A LEU -6 ? A LEU 26 27 1 Y 1 A VAL -5 ? A VAL 27 28 1 Y 1 A PHE -4 ? A PHE 28 29 1 Y 1 A VAL -3 ? A VAL 29 30 1 Y 1 A SER -2 ? A SER 30 31 1 Y 1 A GLU -1 ? A GLU 31 32 1 Y 1 A ALA 0 ? A ALA 32 33 1 Y 1 A GLY 1 ? A GLY 33 34 1 Y 1 A PRO 2 ? A PRO 34 35 1 Y 1 A THR 3 ? A THR 35 36 1 Y 1 A GLY 4 ? A GLY 36 37 1 Y 1 A THR 5 ? A THR 37 38 1 Y 1 A GLY 6 ? A GLY 38 39 1 Y 1 A GLU 7 ? A GLU 39 40 1 Y 1 A SER 8 ? A SER 40 41 1 Y 1 A LYS 9 ? A LYS 41 42 1 Y 1 A PRO 125 ? A PRO 157 43 1 Y 1 A LYS 126 ? A LYS 158 44 1 Y 1 A GLU 127 ? A GLU 159 45 1 Y 1 B MET -31 ? B MET 1 46 1 Y 1 B ARG -30 ? B ARG 2 47 1 Y 1 B GLY -29 ? B GLY 3 48 1 Y 1 B SER -28 ? B SER 4 49 1 Y 1 B HIS -27 ? B HIS 5 50 1 Y 1 B HIS -26 ? B HIS 6 51 1 Y 1 B HIS -25 ? B HIS 7 52 1 Y 1 B HIS -24 ? B HIS 8 53 1 Y 1 B HIS -23 ? B HIS 9 54 1 Y 1 B HIS -22 ? B HIS 10 55 1 Y 1 B GLY -21 ? B GLY 11 56 1 Y 1 B SER -20 ? B SER 12 57 1 Y 1 B MET -19 ? B MET 13 58 1 Y 1 B ALA -18 ? B ALA 14 59 1 Y 1 B SER -17 ? B SER 15 60 1 Y 1 B HIS -16 ? B HIS 16 61 1 Y 1 B ARG -15 ? B ARG 17 62 1 Y 1 B LEU -14 ? B LEU 18 63 1 Y 1 B LEU -13 ? B LEU 19 64 1 Y 1 B LEU -12 ? B LEU 20 65 1 Y 1 B LEU -11 ? B LEU 21 66 1 Y 1 B CYS -10 ? B CYS 22 67 1 Y 1 B LEU -9 ? B LEU 23 68 1 Y 1 B ALA -8 ? B ALA 24 69 1 Y 1 B GLY -7 ? B GLY 25 70 1 Y 1 B LEU -6 ? B LEU 26 71 1 Y 1 B VAL -5 ? B VAL 27 72 1 Y 1 B PHE -4 ? B PHE 28 73 1 Y 1 B VAL -3 ? B VAL 29 74 1 Y 1 B SER -2 ? B SER 30 75 1 Y 1 B GLU -1 ? B GLU 31 76 1 Y 1 B ALA 0 ? B ALA 32 77 1 Y 1 B GLY 1 ? B GLY 33 78 1 Y 1 B PRO 2 ? B PRO 34 79 1 Y 1 B THR 3 ? B THR 35 80 1 Y 1 B GLY 4 ? B GLY 36 81 1 Y 1 B THR 5 ? B THR 37 82 1 Y 1 B GLY 6 ? B GLY 38 83 1 Y 1 B GLU 7 ? B GLU 39 84 1 Y 1 B SER 8 ? B SER 40 85 1 Y 1 B LYS 9 ? B LYS 41 86 1 Y 1 B PRO 125 ? B PRO 157 87 1 Y 1 B LYS 126 ? B LYS 158 88 1 Y 1 B GLU 127 ? B GLU 159 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PKK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PKK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone' PKK 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4PWE _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #