HEADER PROTEIN BINDING 26-FEB-23 8IJ9 TITLE CRYSTAL STRUCTURE OF THE ELKS1/RAB6B COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-6B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.5.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ELKS/RAB6-INTERACTING/CAST FAMILY MEMBER 1; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: ERC-1,CAZ-ASSOCIATED STRUCTURAL PROTEIN 2,CAST2,RAB6- COMPND 11 INTERACTING PROTEIN 2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RAB6B, D9BWG0185E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: ERC1, CAST2, ELKS, RAB6IP2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SMALL GTPASE, SCAFFOLD PROTEIN, PROTEIN COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.JIN,Z.WEI REVDAT 2 28-JUN-23 8IJ9 1 JRNL REVDAT 1 14-JUN-23 8IJ9 0 JRNL AUTH G.JIN,L.LIN,K.LI,J.LI,C.YU,Z.WEI JRNL TITL STRUCTURAL BASIS OF ELKS/RAB6B INTERACTION AND ITS ROLE IN JRNL TITL 2 VESICLE CAPTURING ENHANCED BY LIQUID-LIQUID PHASE JRNL TITL 3 SEPARATION. JRNL REF J.BIOL.CHEM. V. 299 04808 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37172719 JRNL DOI 10.1016/J.JBC.2023.104808 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 26635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.5600 - 4.2400 0.99 3146 167 0.1564 0.1774 REMARK 3 2 4.2400 - 3.3700 0.98 3074 158 0.1512 0.2136 REMARK 3 3 3.3700 - 2.9400 0.99 3095 146 0.1813 0.2350 REMARK 3 4 2.9400 - 2.6700 0.99 3099 147 0.1917 0.2702 REMARK 3 5 2.6700 - 2.4800 0.98 3097 141 0.1838 0.2675 REMARK 3 6 2.4800 - 2.3400 0.97 2976 167 0.1828 0.2687 REMARK 3 7 2.3400 - 2.2200 0.75 2357 113 0.1912 0.2432 REMARK 3 8 2.2200 - 2.1200 0.95 2923 153 0.1965 0.2278 REMARK 3 9 2.1200 - 2.0400 0.51 1595 81 0.2131 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3945 REMARK 3 ANGLE : 1.129 5320 REMARK 3 CHIRALITY : 0.062 615 REMARK 3 PLANARITY : 0.008 663 REMARK 3 DIHEDRAL : 18.186 1519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6380 -24.7795 18.3856 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.2277 REMARK 3 T33: 0.2179 T12: -0.0267 REMARK 3 T13: 0.0234 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.1589 L22: 1.4831 REMARK 3 L33: 1.1172 L12: -0.3940 REMARK 3 L13: 0.2933 L23: 0.0886 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0656 S13: -0.0681 REMARK 3 S21: 0.1052 S22: -0.0717 S23: 0.0687 REMARK 3 S31: 0.0716 S32: -0.1163 S33: 0.0350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6659 -15.6439 23.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1966 REMARK 3 T33: 0.2649 T12: 0.0050 REMARK 3 T13: -0.0261 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.3304 L22: 4.2414 REMARK 3 L33: 8.6662 L12: 0.0692 REMARK 3 L13: 1.3628 L23: 3.7955 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.1246 S13: 0.1532 REMARK 3 S21: 0.1996 S22: 0.1862 S23: -0.2753 REMARK 3 S31: -0.2853 S32: 0.4116 S33: -0.0743 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8237 -22.1860 6.4183 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.2088 REMARK 3 T33: 0.1866 T12: 0.0115 REMARK 3 T13: 0.0156 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.8664 L22: 0.7325 REMARK 3 L33: 1.4124 L12: -0.4787 REMARK 3 L13: 0.1209 L23: 0.3762 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.2781 S13: 0.1289 REMARK 3 S21: -0.2358 S22: -0.0884 S23: -0.0460 REMARK 3 S31: -0.1190 S32: -0.0293 S33: 0.0049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7511 -20.7127 11.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.2213 REMARK 3 T33: 0.2697 T12: -0.0182 REMARK 3 T13: 0.0201 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.1925 L22: 3.0705 REMARK 3 L33: 3.0381 L12: -2.0748 REMARK 3 L13: 0.8466 L23: -0.3801 REMARK 3 S TENSOR REMARK 3 S11: 0.1642 S12: 0.3165 S13: 0.3701 REMARK 3 S21: -0.3557 S22: -0.1346 S23: -0.2682 REMARK 3 S31: -0.1400 S32: 0.3323 S33: 0.0558 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7791 -15.1143 21.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2562 REMARK 3 T33: 0.2580 T12: -0.0260 REMARK 3 T13: -0.0459 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 5.2905 L22: 8.3080 REMARK 3 L33: 3.8669 L12: -2.0962 REMARK 3 L13: 0.6134 L23: -0.8513 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: -0.2781 S13: 0.4196 REMARK 3 S21: 0.5828 S22: 0.0046 S23: -0.1691 REMARK 3 S31: -0.5416 S32: 0.3870 S33: 0.2195 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0650 -32.3035 39.3708 REMARK 3 T TENSOR REMARK 3 T11: 0.3056 T22: 0.2213 REMARK 3 T33: 0.2774 T12: 0.0431 REMARK 3 T13: -0.0104 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 8.0640 L22: 5.0115 REMARK 3 L33: 8.0803 L12: 1.5380 REMARK 3 L13: 3.5576 L23: 2.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.3530 S12: -0.1807 S13: 0.7637 REMARK 3 S21: 0.5475 S22: 0.2426 S23: 0.0399 REMARK 3 S31: -0.4321 S32: 0.4363 S33: 0.0993 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0490 -41.5880 34.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.1532 REMARK 3 T33: 0.1724 T12: 0.0024 REMARK 3 T13: 0.0040 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.5776 L22: 1.2123 REMARK 3 L33: 2.1846 L12: -0.0556 REMARK 3 L13: 0.3530 L23: 0.3194 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0650 S13: -0.0238 REMARK 3 S21: 0.1010 S22: 0.0238 S23: -0.0269 REMARK 3 S31: 0.0606 S32: -0.0720 S33: -0.0081 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7447 -36.3633 22.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1869 REMARK 3 T33: 0.1756 T12: -0.0177 REMARK 3 T13: 0.0039 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.4801 L22: 1.8362 REMARK 3 L33: 1.6211 L12: -0.5962 REMARK 3 L13: 0.1878 L23: -0.3449 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: 0.0739 S13: 0.1427 REMARK 3 S21: 0.0471 S22: -0.0013 S23: 0.0427 REMARK 3 S31: -0.0842 S32: -0.0149 S33: 0.0826 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 849 THROUGH 880 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9993 -14.3123 14.9227 REMARK 3 T TENSOR REMARK 3 T11: 0.2641 T22: 0.2149 REMARK 3 T33: 0.3349 T12: 0.0168 REMARK 3 T13: 0.0641 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.0033 L22: 3.4903 REMARK 3 L33: 2.0903 L12: -0.0602 REMARK 3 L13: 2.4428 L23: 0.7549 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.4283 S13: 0.1482 REMARK 3 S21: -0.4035 S22: -0.0486 S23: 0.0066 REMARK 3 S31: -0.2991 S32: 0.3024 S33: -0.0106 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 881 THROUGH 919 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3494 -22.1446 19.6416 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.2299 REMARK 3 T33: 0.3942 T12: -0.0232 REMARK 3 T13: 0.0645 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.1346 L22: 2.2873 REMARK 3 L33: 9.7037 L12: 0.3039 REMARK 3 L13: 0.7870 L23: -0.3077 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.0072 S13: -0.2272 REMARK 3 S21: 0.1263 S22: 0.0271 S23: 0.0763 REMARK 3 S31: 0.3551 S32: -0.4944 S33: -0.0666 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 846 THROUGH 880 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5748 -38.6323 52.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.1452 REMARK 3 T33: 0.1335 T12: -0.0268 REMARK 3 T13: -0.0265 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 4.3844 L22: 1.7398 REMARK 3 L33: 4.2807 L12: -0.1493 REMARK 3 L13: -0.3876 L23: 0.1500 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.0389 S13: -0.1177 REMARK 3 S21: 0.1332 S22: 0.0160 S23: 0.0501 REMARK 3 S31: 0.1141 S32: -0.1885 S33: 0.0771 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 881 THROUGH 914 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4847 -46.7633 50.0437 REMARK 3 T TENSOR REMARK 3 T11: 0.5480 T22: 0.2312 REMARK 3 T33: 0.3566 T12: 0.0159 REMARK 3 T13: -0.0413 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 5.9486 L22: 1.5649 REMARK 3 L33: 2.7854 L12: -0.8632 REMARK 3 L13: 2.2585 L23: 1.1470 REMARK 3 S TENSOR REMARK 3 S11: 1.0268 S12: -0.5529 S13: -0.8345 REMARK 3 S21: 0.2337 S22: -0.3529 S23: -0.2122 REMARK 3 S31: 0.3533 S32: -0.0353 S33: -0.6098 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 915 THROUGH 919 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0924 -51.4917 50.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.8555 T22: 0.5374 REMARK 3 T33: 0.8709 T12: -0.2109 REMARK 3 T13: 0.1014 T23: -0.0645 REMARK 3 L TENSOR REMARK 3 L11: 3.3797 L22: 2.5819 REMARK 3 L33: 3.8093 L12: 2.7766 REMARK 3 L13: -0.9110 L23: 0.2925 REMARK 3 S TENSOR REMARK 3 S11: 0.3393 S12: -1.0098 S13: -0.0008 REMARK 3 S21: 0.7753 S22: -1.1660 S23: 0.4187 REMARK 3 S31: -0.1173 S32: 0.3803 S33: 0.7046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 51.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 AND 42 % V/V REMARK 280 POLYETHYLENE GLYCOL 200, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.61350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 GLY A 176 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 ASN B 9 REMARK 465 GLY B 176 REMARK 465 GLY C 845 REMARK 465 PRO C 846 REMARK 465 GLY C 847 REMARK 465 SER C 848 REMARK 465 GLU C 920 REMARK 465 ASP C 921 REMARK 465 ASP C 922 REMARK 465 GLY D 845 REMARK 465 SER D 882 REMARK 465 LYS D 883 REMARK 465 LYS D 884 REMARK 465 LYS D 885 REMARK 465 GLU D 920 REMARK 465 ASP D 921 REMARK 465 ASP D 922 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS C 859 CG CD CE NZ REMARK 470 LYS C 883 CG CD CE NZ REMARK 470 LYS C 884 CG CD CE NZ REMARK 470 ARG C 899 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 918 CG OD1 ND2 REMARK 470 ASP D 917 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 363 O HOH B 373 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 127 36.39 75.47 REMARK 500 LEU A 130 57.59 -91.16 REMARK 500 GLU B 58 55.13 33.32 REMARK 500 LYS B 127 34.73 75.66 REMARK 500 SER C 881 45.47 -76.40 REMARK 500 SER C 882 49.91 -92.00 REMARK 500 ASN D 918 41.36 -104.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 THR A 45 OG1 81.1 REMARK 620 3 GTP A 201 O1G 171.0 90.1 REMARK 620 4 GTP A 201 O2B 93.4 174.3 95.4 REMARK 620 5 HOH A 314 O 88.8 88.6 89.1 89.9 REMARK 620 6 HOH A 348 O 89.1 88.1 92.4 93.3 176.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 27 OG1 REMARK 620 2 THR B 45 OG1 85.2 REMARK 620 3 GTP B 201 O1G 177.0 92.1 REMARK 620 4 GTP B 201 O2B 90.2 173.9 92.6 REMARK 620 5 HOH B 322 O 87.2 90.2 94.1 85.7 REMARK 620 6 HOH B 325 O 87.7 98.4 91.4 85.3 169.6 REMARK 620 N 1 2 3 4 5 DBREF 8IJ9 A 8 176 UNP P61294 RAB6B_MOUSE 8 176 DBREF 8IJ9 B 8 176 UNP P61294 RAB6B_MOUSE 8 176 DBREF 8IJ9 C 849 922 UNP Q811U3 RB6I2_RAT 849 922 DBREF 8IJ9 D 849 922 UNP Q811U3 RB6I2_RAT 849 922 SEQADV 8IJ9 GLY A 4 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 PRO A 5 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 GLY A 6 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 SER A 7 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 LEU A 72 UNP P61294 GLN 72 ENGINEERED MUTATION SEQADV 8IJ9 GLY B 4 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 PRO B 5 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 GLY B 6 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 SER B 7 UNP P61294 EXPRESSION TAG SEQADV 8IJ9 LEU B 72 UNP P61294 GLN 72 ENGINEERED MUTATION SEQADV 8IJ9 GLY C 845 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 PRO C 846 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 GLY C 847 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 SER C 848 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 GLY D 845 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 PRO D 846 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 GLY D 847 UNP Q811U3 EXPRESSION TAG SEQADV 8IJ9 SER D 848 UNP Q811U3 EXPRESSION TAG SEQRES 1 A 173 GLY PRO GLY SER GLY ASN PRO LEU ARG LYS PHE LYS LEU SEQRES 2 A 173 VAL PHE LEU GLY GLU GLN SER VAL GLY LYS THR SER LEU SEQRES 3 A 173 ILE THR ARG PHE MET TYR ASP SER PHE ASP ASN THR TYR SEQRES 4 A 173 GLN ALA THR ILE GLY ILE ASP PHE LEU SER LYS THR MET SEQRES 5 A 173 TYR LEU GLU ASP ARG THR VAL ARG LEU GLN LEU TRP ASP SEQRES 6 A 173 THR ALA GLY LEU GLU ARG PHE ARG SER LEU ILE PRO SER SEQRES 7 A 173 TYR ILE ARG ASP SER THR VAL ALA VAL VAL VAL TYR ASP SEQRES 8 A 173 ILE THR ASN LEU ASN SER PHE GLN GLN THR SER LYS TRP SEQRES 9 A 173 ILE ASP ASP VAL ARG THR GLU ARG GLY SER ASP VAL ILE SEQRES 10 A 173 ILE MET LEU VAL GLY ASN LYS THR ASP LEU ALA ASP LYS SEQRES 11 A 173 ARG GLN ILE THR ILE GLU GLU GLY GLU GLN ARG ALA LYS SEQRES 12 A 173 GLU LEU SER VAL MET PHE ILE GLU THR SER ALA LYS THR SEQRES 13 A 173 GLY TYR ASN VAL LYS GLN LEU PHE ARG ARG VAL ALA SER SEQRES 14 A 173 ALA LEU PRO GLY SEQRES 1 B 173 GLY PRO GLY SER GLY ASN PRO LEU ARG LYS PHE LYS LEU SEQRES 2 B 173 VAL PHE LEU GLY GLU GLN SER VAL GLY LYS THR SER LEU SEQRES 3 B 173 ILE THR ARG PHE MET TYR ASP SER PHE ASP ASN THR TYR SEQRES 4 B 173 GLN ALA THR ILE GLY ILE ASP PHE LEU SER LYS THR MET SEQRES 5 B 173 TYR LEU GLU ASP ARG THR VAL ARG LEU GLN LEU TRP ASP SEQRES 6 B 173 THR ALA GLY LEU GLU ARG PHE ARG SER LEU ILE PRO SER SEQRES 7 B 173 TYR ILE ARG ASP SER THR VAL ALA VAL VAL VAL TYR ASP SEQRES 8 B 173 ILE THR ASN LEU ASN SER PHE GLN GLN THR SER LYS TRP SEQRES 9 B 173 ILE ASP ASP VAL ARG THR GLU ARG GLY SER ASP VAL ILE SEQRES 10 B 173 ILE MET LEU VAL GLY ASN LYS THR ASP LEU ALA ASP LYS SEQRES 11 B 173 ARG GLN ILE THR ILE GLU GLU GLY GLU GLN ARG ALA LYS SEQRES 12 B 173 GLU LEU SER VAL MET PHE ILE GLU THR SER ALA LYS THR SEQRES 13 B 173 GLY TYR ASN VAL LYS GLN LEU PHE ARG ARG VAL ALA SER SEQRES 14 B 173 ALA LEU PRO GLY SEQRES 1 C 78 GLY PRO GLY SER ARG LYS HIS LEU GLU GLU VAL LEU GLU SEQRES 2 C 78 MET LYS GLN GLU ALA LEU LEU ALA ALA ILE SER GLU LYS SEQRES 3 C 78 ASP ALA ASN ILE ALA LEU LEU GLU LEU SER SER SER LYS SEQRES 4 C 78 LYS LYS THR GLN GLU GLU VAL ALA ALA LEU LYS ARG GLU SEQRES 5 C 78 LYS ASP ARG LEU VAL GLN GLN LEU LYS GLN GLN THR GLN SEQRES 6 C 78 ASN ARG MET LYS LEU MET ALA ASP ASN TYR GLU ASP ASP SEQRES 1 D 78 GLY PRO GLY SER ARG LYS HIS LEU GLU GLU VAL LEU GLU SEQRES 2 D 78 MET LYS GLN GLU ALA LEU LEU ALA ALA ILE SER GLU LYS SEQRES 3 D 78 ASP ALA ASN ILE ALA LEU LEU GLU LEU SER SER SER LYS SEQRES 4 D 78 LYS LYS THR GLN GLU GLU VAL ALA ALA LEU LYS ARG GLU SEQRES 5 D 78 LYS ASP ARG LEU VAL GLN GLN LEU LYS GLN GLN THR GLN SEQRES 6 D 78 ASN ARG MET LYS LEU MET ALA ASP ASN TYR GLU ASP ASP HET GTP A 201 32 HET MG A 202 1 HET GTP B 201 32 HET MG B 202 1 HET PGE D1001 10 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 5 GTP 2(C10 H16 N5 O14 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 PGE C6 H14 O4 FORMUL 10 HOH *226(H2 O) HELIX 1 AA1 GLY A 25 ASP A 36 1 12 HELIX 2 AA2 LEU A 72 SER A 77 5 6 HELIX 3 AA3 LEU A 78 ASP A 85 1 8 HELIX 4 AA4 ASN A 97 GLN A 103 1 7 HELIX 5 AA5 GLN A 103 GLY A 116 1 14 HELIX 6 AA6 LEU A 130 ARG A 134 5 5 HELIX 7 AA7 THR A 137 LEU A 148 1 12 HELIX 8 AA8 ASN A 162 LEU A 174 1 13 HELIX 9 AA9 GLY B 25 ASP B 36 1 12 HELIX 10 AB1 LEU B 72 SER B 77 5 6 HELIX 11 AB2 LEU B 78 SER B 86 1 9 HELIX 12 AB3 ASN B 97 GLN B 103 1 7 HELIX 13 AB4 GLN B 103 GLY B 116 1 14 HELIX 14 AB5 LEU B 130 ARG B 134 5 5 HELIX 15 AB6 THR B 137 SER B 149 1 13 HELIX 16 AB7 ASN B 162 ALA B 173 1 12 HELIX 17 AB8 LYS C 850 SER C 880 1 31 HELIX 18 AB9 LYS C 883 ALA C 916 1 34 HELIX 19 AC1 GLY D 847 SER D 881 1 35 HELIX 20 AC2 GLN D 887 MET D 915 1 29 SHEET 1 AA1 6 ILE A 48 LEU A 57 0 SHEET 2 AA1 6 ARG A 60 THR A 69 -1 O LEU A 66 N LEU A 51 SHEET 3 AA1 6 LEU A 11 LEU A 19 1 N LEU A 16 O GLN A 65 SHEET 4 AA1 6 VAL A 88 ASP A 94 1 O VAL A 92 N LEU A 19 SHEET 5 AA1 6 ILE A 120 ASN A 126 1 O VAL A 124 N TYR A 93 SHEET 6 AA1 6 MET A 151 GLU A 154 1 O MET A 151 N LEU A 123 SHEET 1 AA2 6 ILE B 48 LEU B 57 0 SHEET 2 AA2 6 ARG B 60 THR B 69 -1 O LEU B 66 N LEU B 51 SHEET 3 AA2 6 LEU B 11 LEU B 19 1 N LEU B 16 O TRP B 67 SHEET 4 AA2 6 VAL B 88 ASP B 94 1 O VAL B 90 N VAL B 17 SHEET 5 AA2 6 ILE B 120 ASN B 126 1 O VAL B 124 N VAL B 91 SHEET 6 AA2 6 MET B 151 GLU B 154 1 O MET B 151 N LEU B 123 LINK OG1 THR A 27 MG MG A 202 1555 1555 2.15 LINK OG1 THR A 45 MG MG A 202 1555 1555 2.29 LINK O1G GTP A 201 MG MG A 202 1555 1555 2.07 LINK O2B GTP A 201 MG MG A 202 1555 1555 2.04 LINK MG MG A 202 O HOH A 314 1555 1555 2.28 LINK MG MG A 202 O HOH A 348 1555 1555 2.14 LINK OG1 THR B 27 MG MG B 202 1555 1555 2.17 LINK OG1 THR B 45 MG MG B 202 1555 1555 2.14 LINK O1G GTP B 201 MG MG B 202 1555 1555 2.00 LINK O2B GTP B 201 MG MG B 202 1555 1555 2.09 LINK MG MG B 202 O HOH B 322 1555 1555 2.08 LINK MG MG B 202 O HOH B 325 1555 1555 2.04 CRYST1 49.193 93.227 53.077 90.00 103.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020328 0.000000 0.004970 0.00000 SCALE2 0.000000 0.010727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019395 0.00000