HEADER DNA BINDING PROTEIN 27-FEB-23 8IJP TITLE STRUCTURE OF DNA BINDING DOMAIN OF MCRBC ENDONUCLEASE BOUND TO DNA: TITLE 2 L68Y MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV METHYL-DIRECTED RESTRICTION ENZYME ECOKMCRB COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ECOKMCRBC,5-METHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME B; COMPND 6 EC: 3.1.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MCRB, RGLB, B4346, JW5871; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 10 ORGANISM_TAXID: 2853804; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 14 ORGANISM_TAXID: 2853804 KEYWDS MCRB-NTD, 5-METHYLCYTOSINE, RESTRICTION ENDONUCLEASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.A.ADHAV,K.SAIKRISHNAN REVDAT 1 28-FEB-24 8IJP 0 JRNL AUTH V.A.ADHAV,K.SAIKRISHNAN JRNL TITL STRUCTURAL BASIS OF TARGET RECOGNITION BY THE DNA BINDING JRNL TITL 2 DOMAIN OF MCRBC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.1500 - 4.8200 0.99 1725 210 0.1718 0.2021 REMARK 3 2 4.8100 - 3.8200 1.00 1682 167 0.1248 0.1443 REMARK 3 3 3.8200 - 3.3400 1.00 1636 182 0.1296 0.1535 REMARK 3 4 3.3400 - 3.0300 1.00 1609 185 0.1543 0.1983 REMARK 3 5 3.0300 - 2.8200 1.00 1638 169 0.1512 0.1864 REMARK 3 6 2.8200 - 2.6500 1.00 1599 182 0.1556 0.1682 REMARK 3 7 2.6500 - 2.5200 1.00 1610 173 0.1529 0.1808 REMARK 3 8 2.5200 - 2.4100 1.00 1589 169 0.1530 0.2203 REMARK 3 9 2.4100 - 2.3200 1.00 1606 183 0.1471 0.1986 REMARK 3 10 2.3200 - 2.2400 1.00 1592 171 0.1508 0.1822 REMARK 3 11 2.2400 - 2.1700 1.00 1595 163 0.1505 0.1958 REMARK 3 12 2.1700 - 2.1000 1.00 1563 195 0.1615 0.2137 REMARK 3 13 2.1000 - 2.0500 1.00 1598 175 0.1785 0.1961 REMARK 3 14 2.0500 - 2.0000 1.00 1550 185 0.1691 0.1998 REMARK 3 15 2.0000 - 1.9500 1.00 1602 174 0.1664 0.1988 REMARK 3 16 1.9500 - 1.9100 1.00 1568 180 0.1662 0.1994 REMARK 3 17 1.9100 - 1.8700 1.00 1580 179 0.1654 0.2149 REMARK 3 18 1.8700 - 1.8400 1.00 1603 159 0.1610 0.1983 REMARK 3 19 1.8400 - 1.8000 1.00 1502 195 0.1652 0.1987 REMARK 3 20 1.8000 - 1.7700 1.00 1617 173 0.1752 0.2171 REMARK 3 21 1.7700 - 1.7500 1.00 1575 173 0.1974 0.2253 REMARK 3 22 1.7500 - 1.7200 1.00 1545 158 0.2017 0.2595 REMARK 3 23 1.7200 - 1.6900 1.00 1583 192 0.2166 0.2462 REMARK 3 24 1.6900 - 1.6700 1.00 1593 165 0.2039 0.2447 REMARK 3 25 1.6700 - 1.6500 1.00 1530 181 0.1991 0.2367 REMARK 3 26 1.6500 - 1.6300 1.00 1574 190 0.2105 0.2649 REMARK 3 27 1.6300 - 1.6100 1.00 1565 173 0.2240 0.2493 REMARK 3 28 1.6100 - 1.5900 1.00 1597 146 0.2348 0.2842 REMARK 3 29 1.5900 - 1.5700 1.00 1539 164 0.2479 0.2893 REMARK 3 30 1.5700 - 1.5500 0.99 1588 182 0.2596 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.162 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.686 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3765 REMARK 3 ANGLE : 1.252 5317 REMARK 3 CHIRALITY : 0.075 555 REMARK 3 PLANARITY : 0.010 516 REMARK 3 DIHEDRAL : 25.431 843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5030 4.3799 23.0305 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1713 REMARK 3 T33: 0.1803 T12: -0.0738 REMARK 3 T13: -0.0037 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.8894 L22: 3.9125 REMARK 3 L33: 7.5554 L12: -0.7567 REMARK 3 L13: -0.2296 L23: -0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: 0.0578 S13: 0.1985 REMARK 3 S21: 0.0236 S22: 0.0338 S23: -0.1397 REMARK 3 S31: -0.3322 S32: 0.4321 S33: 0.0474 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3061 -3.2398 22.2574 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1089 REMARK 3 T33: 0.1325 T12: -0.0051 REMARK 3 T13: -0.0041 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.4498 L22: 1.9150 REMARK 3 L33: 3.2969 L12: -0.2382 REMARK 3 L13: 0.2828 L23: -0.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.0757 S13: -0.0710 REMARK 3 S21: -0.0005 S22: 0.0519 S23: -0.0334 REMARK 3 S31: 0.0858 S32: 0.0382 S33: -0.0151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8905 -5.1326 25.5230 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1727 REMARK 3 T33: 0.2047 T12: -0.0435 REMARK 3 T13: 0.0131 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.6222 L22: 1.7853 REMARK 3 L33: 3.8585 L12: -0.2513 REMARK 3 L13: -0.4018 L23: 0.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.0715 S13: -0.3131 REMARK 3 S21: 0.0388 S22: -0.0030 S23: 0.2415 REMARK 3 S31: 0.3652 S32: -0.3414 S33: -0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2474 4.8839 33.4497 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.2097 REMARK 3 T33: 0.1790 T12: 0.0510 REMARK 3 T13: -0.0041 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 8.7482 L22: 4.6430 REMARK 3 L33: 7.7073 L12: 6.3172 REMARK 3 L13: 4.9620 L23: 4.3901 REMARK 3 S TENSOR REMARK 3 S11: 0.1457 S12: -0.5783 S13: -0.0829 REMARK 3 S21: 0.7224 S22: -0.1456 S23: -0.2917 REMARK 3 S31: -0.0745 S32: -0.2784 S33: 0.0197 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4117 -11.7944 32.2612 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.1529 REMARK 3 T33: 0.1633 T12: 0.0463 REMARK 3 T13: -0.0079 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 4.3962 L22: 6.5815 REMARK 3 L33: 2.7274 L12: 3.2452 REMARK 3 L13: 0.7753 L23: 0.2826 REMARK 3 S TENSOR REMARK 3 S11: 0.1553 S12: -0.0190 S13: -0.2708 REMARK 3 S21: 0.2601 S22: -0.0317 S23: -0.2239 REMARK 3 S31: 0.5104 S32: 0.0072 S33: -0.0760 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5379 8.5564 -19.2334 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.3116 REMARK 3 T33: 0.1940 T12: 0.0507 REMARK 3 T13: 0.0217 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 8.4463 L22: 7.8820 REMARK 3 L33: 8.9002 L12: 4.2711 REMARK 3 L13: 5.5856 L23: 4.1394 REMARK 3 S TENSOR REMARK 3 S11: -0.1697 S12: 0.6153 S13: 0.4104 REMARK 3 S21: -0.3627 S22: 0.0364 S23: 0.2873 REMARK 3 S31: -0.2490 S32: -0.4254 S33: 0.1442 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9054 0.5271 -14.6811 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2674 REMARK 3 T33: 0.1680 T12: -0.0283 REMARK 3 T13: 0.0082 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 5.0825 L22: 7.6192 REMARK 3 L33: 6.5911 L12: 0.2236 REMARK 3 L13: 1.2392 L23: 5.3525 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.1074 S13: -0.2114 REMARK 3 S21: -0.1012 S22: -0.0872 S23: 0.0666 REMARK 3 S31: 0.0914 S32: -0.6316 S33: 0.0750 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6946 2.0243 -14.8823 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1129 REMARK 3 T33: 0.1132 T12: 0.0086 REMARK 3 T13: -0.0095 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.7936 L22: 2.1973 REMARK 3 L33: 4.2882 L12: 0.2890 REMARK 3 L13: 0.3887 L23: 0.5245 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.1232 S13: -0.1644 REMARK 3 S21: -0.0064 S22: 0.0003 S23: -0.0506 REMARK 3 S31: 0.0614 S32: 0.0124 S33: 0.0071 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4233 -9.6540 -15.1207 REMARK 3 T TENSOR REMARK 3 T11: 0.3707 T22: 0.2363 REMARK 3 T33: 0.4373 T12: 0.0791 REMARK 3 T13: -0.0015 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.9536 L22: 7.1188 REMARK 3 L33: 4.1993 L12: -1.6929 REMARK 3 L13: 1.4236 L23: -2.8041 REMARK 3 S TENSOR REMARK 3 S11: 0.1856 S12: -0.0892 S13: -0.6159 REMARK 3 S21: 0.0092 S22: 0.0226 S23: -0.4211 REMARK 3 S31: 1.2307 S32: 0.6256 S33: -0.1087 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1965 -3.6354 -29.4504 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.4376 REMARK 3 T33: 0.2991 T12: 0.0796 REMARK 3 T13: 0.0449 T23: -0.1337 REMARK 3 L TENSOR REMARK 3 L11: 4.6670 L22: 5.5986 REMARK 3 L33: 8.1641 L12: -0.2938 REMARK 3 L13: -4.6646 L23: -4.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.2633 S12: 1.3515 S13: -0.7380 REMARK 3 S21: -1.1882 S22: 0.5246 S23: -0.4124 REMARK 3 S31: 0.7786 S32: 0.4950 S33: -0.1506 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6680 6.8961 -16.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.2381 REMARK 3 T33: 0.2236 T12: 0.0111 REMARK 3 T13: -0.0012 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 9.4607 L22: 8.6305 REMARK 3 L33: 6.0972 L12: 5.6726 REMARK 3 L13: -4.1791 L23: -4.0790 REMARK 3 S TENSOR REMARK 3 S11: 0.1023 S12: 0.0035 S13: 0.4229 REMARK 3 S21: 0.1483 S22: -0.1328 S23: 0.0014 REMARK 3 S31: -0.1597 S32: 0.4528 S33: 0.0091 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8240 11.0251 -25.1025 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.2218 REMARK 3 T33: 0.2046 T12: -0.0323 REMARK 3 T13: 0.0047 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 8.6964 L22: 2.6336 REMARK 3 L33: 7.3002 L12: -3.6325 REMARK 3 L13: -0.8563 L23: 2.8892 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.5809 S13: 0.5005 REMARK 3 S21: -0.5344 S22: -0.0568 S23: -0.3014 REMARK 3 S31: -0.5806 S32: 0.1112 S33: 0.0405 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9242 -2.0361 -28.9686 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.3000 REMARK 3 T33: 0.1731 T12: -0.0468 REMARK 3 T13: 0.0297 T23: -0.0960 REMARK 3 L TENSOR REMARK 3 L11: 8.6706 L22: 3.1466 REMARK 3 L33: 4.9930 L12: -5.1086 REMARK 3 L13: 1.0324 L23: -1.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.2790 S12: 0.6155 S13: -0.3284 REMARK 3 S21: -0.7245 S22: -0.2764 S23: 0.0083 REMARK 3 S31: 0.3752 S32: 0.1851 S33: 0.0092 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0222 -2.0211 3.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.4389 T22: 0.4097 REMARK 3 T33: 0.2176 T12: -0.1852 REMARK 3 T13: 0.0040 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.9573 L22: 2.1128 REMARK 3 L33: 2.9163 L12: 1.3775 REMARK 3 L13: 0.7024 L23: -0.5720 REMARK 3 S TENSOR REMARK 3 S11: -0.4316 S12: 1.2018 S13: 0.0131 REMARK 3 S21: -0.9332 S22: 0.7222 S23: -0.0112 REMARK 3 S31: 0.5000 S32: 0.1412 S33: -0.0040 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0596 -1.9482 3.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.3124 REMARK 3 T33: 0.1548 T12: 0.0671 REMARK 3 T13: 0.0190 T23: 0.0870 REMARK 3 L TENSOR REMARK 3 L11: 1.1070 L22: 2.7343 REMARK 3 L33: 3.2156 L12: -0.1954 REMARK 3 L13: 0.6264 L23: 0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: -0.8269 S13: -0.1916 REMARK 3 S21: 0.4764 S22: 0.0871 S23: -0.0309 REMARK 3 S31: 0.3365 S32: -0.1548 S33: -0.0166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 68.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.2 M BIS-TRIS PH 5.5 AND 12-24% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.03450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.91450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.91450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.03450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 161 REMARK 465 LEU A 162 REMARK 465 GLU A 163 REMARK 465 GLY A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 465 GLY B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 VAL B 158 REMARK 465 ILE B 159 REMARK 465 PRO B 160 REMARK 465 PRO B 161 REMARK 465 LEU B 162 REMARK 465 GLU B 163 REMARK 465 GLY B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 DT C 1 REMARK 465 DA D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLN A 93 CD OE1 NE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ILE A 98 CG1 CD1 REMARK 470 LYS A 100 CD CE NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 ILE A 151 CD1 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS B 13 CD CE NZ REMARK 470 GLN B 17 OE1 NE2 REMARK 470 ARG B 19 CD NE CZ NH1 NH2 REMARK 470 LYS B 24 CD CE NZ REMARK 470 GLN B 91 CD OE1 NE2 REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 LYS B 100 CE NZ REMARK 470 DG C 2 P OP1 OP2 REMARK 470 DG D 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 216 O HOH D 222 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 11 O3' DA C 11 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 150 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 6 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT D 10 O5' - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 43.98 -91.70 REMARK 500 ASN A 61 88.70 -162.35 REMARK 500 TYR A 64 145.50 -175.15 REMARK 500 SER A 96 -131.65 -110.28 REMARK 500 ASP B 25 46.36 -92.92 REMARK 500 ASN B 61 87.60 -162.79 REMARK 500 TYR B 64 145.99 -172.31 REMARK 500 SER B 95 -118.40 -91.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 333 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH D 225 DISTANCE = 6.19 ANGSTROMS DBREF 8IJP A 1 161 UNP P15005 MCRB_ECOLI 1 161 DBREF 8IJP B 1 161 UNP P15005 MCRB_ECOLI 1 161 DBREF 8IJP C 1 13 PDB 8IJP 8IJP 1 13 DBREF 8IJP D 1 13 PDB 8IJP 8IJP 1 13 SEQADV 8IJP TYR A 68 UNP P15005 LEU 68 ENGINEERED MUTATION SEQADV 8IJP LEU A 162 UNP P15005 EXPRESSION TAG SEQADV 8IJP GLU A 163 UNP P15005 EXPRESSION TAG SEQADV 8IJP GLY A 164 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 165 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 166 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 167 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 168 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 169 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS A 170 UNP P15005 EXPRESSION TAG SEQADV 8IJP TYR B 68 UNP P15005 LEU 68 ENGINEERED MUTATION SEQADV 8IJP LEU B 162 UNP P15005 EXPRESSION TAG SEQADV 8IJP GLU B 163 UNP P15005 EXPRESSION TAG SEQADV 8IJP GLY B 164 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 165 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 166 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 167 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 168 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 169 UNP P15005 EXPRESSION TAG SEQADV 8IJP HIS B 170 UNP P15005 EXPRESSION TAG SEQRES 1 A 170 MET GLU SER ILE GLN PRO TRP ILE GLU LYS PHE ILE LYS SEQRES 2 A 170 GLN ALA GLN GLN GLN ARG SER GLN SER THR LYS ASP TYR SEQRES 3 A 170 PRO THR SER TYR ARG ASN LEU ARG VAL LYS LEU SER PHE SEQRES 4 A 170 GLY TYR GLY ASN PHE THR SER ILE PRO TRP PHE ALA PHE SEQRES 5 A 170 LEU GLY GLU GLY GLN GLU ALA SER ASN GLY ILE TYR PRO SEQRES 6 A 170 VAL ILE TYR TYR TYR LYS ASP PHE ASP GLU LEU VAL LEU SEQRES 7 A 170 ALA TYR GLY ILE SER ASP THR ASN GLU PRO HIS ALA GLN SEQRES 8 A 170 TRP GLN PHE SER SER ASP ILE PRO LYS THR ILE ALA GLU SEQRES 9 A 170 TYR PHE GLN ALA THR SER GLY VAL TYR PRO LYS LYS TYR SEQRES 10 A 170 GLY GLN SER TYR TYR ALA CYS SER GLN LYS VAL SER GLN SEQRES 11 A 170 GLY ILE ASP TYR THR ARG PHE ALA SER MET LEU ASP ASN SEQRES 12 A 170 ILE ILE ASN ASP TYR LYS LEU ILE PHE ASN SER GLY LYS SEQRES 13 A 170 SER VAL ILE PRO PRO LEU GLU GLY HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS SEQRES 1 B 170 MET GLU SER ILE GLN PRO TRP ILE GLU LYS PHE ILE LYS SEQRES 2 B 170 GLN ALA GLN GLN GLN ARG SER GLN SER THR LYS ASP TYR SEQRES 3 B 170 PRO THR SER TYR ARG ASN LEU ARG VAL LYS LEU SER PHE SEQRES 4 B 170 GLY TYR GLY ASN PHE THR SER ILE PRO TRP PHE ALA PHE SEQRES 5 B 170 LEU GLY GLU GLY GLN GLU ALA SER ASN GLY ILE TYR PRO SEQRES 6 B 170 VAL ILE TYR TYR TYR LYS ASP PHE ASP GLU LEU VAL LEU SEQRES 7 B 170 ALA TYR GLY ILE SER ASP THR ASN GLU PRO HIS ALA GLN SEQRES 8 B 170 TRP GLN PHE SER SER ASP ILE PRO LYS THR ILE ALA GLU SEQRES 9 B 170 TYR PHE GLN ALA THR SER GLY VAL TYR PRO LYS LYS TYR SEQRES 10 B 170 GLY GLN SER TYR TYR ALA CYS SER GLN LYS VAL SER GLN SEQRES 11 B 170 GLY ILE ASP TYR THR ARG PHE ALA SER MET LEU ASP ASN SEQRES 12 B 170 ILE ILE ASN ASP TYR LYS LEU ILE PHE ASN SER GLY LYS SEQRES 13 B 170 SER VAL ILE PRO PRO LEU GLU GLY HIS HIS HIS HIS HIS SEQRES 14 B 170 HIS SEQRES 1 C 13 DT DG DA DG DA DC DC DG DG DT DA DG DC SEQRES 1 D 13 DA DG DC DT DA DC DC DG DG DT DC DT DC HET BTB D 101 14 HET BTB D 102 14 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 5 BTB 2(C8 H19 N O5) FORMUL 7 HOH *318(H2 O) HELIX 1 AA1 ILE A 4 GLN A 18 1 15 HELIX 2 AA2 LYS A 71 PHE A 73 5 3 HELIX 3 AA3 THR A 101 GLY A 111 1 11 HELIX 4 AA4 SER A 129 GLY A 131 5 3 HELIX 5 AA5 ASP A 133 SER A 154 1 22 HELIX 6 AA6 ILE B 4 GLN B 18 1 15 HELIX 7 AA7 LYS B 71 PHE B 73 5 3 HELIX 8 AA8 THR B 101 GLY B 111 1 11 HELIX 9 AA9 SER B 129 GLY B 131 5 3 HELIX 10 AB1 ASP B 133 LYS B 149 1 17 SHEET 1 AA1 6 SER A 29 TYR A 30 0 SHEET 2 AA1 6 LEU A 33 SER A 38 -1 O LEU A 33 N TYR A 30 SHEET 3 AA1 6 TRP A 49 LEU A 53 -1 O ALA A 51 N LYS A 36 SHEET 4 AA1 6 ILE A 63 TYR A 70 -1 O ILE A 67 N PHE A 50 SHEET 5 AA1 6 GLU A 75 ILE A 82 -1 O VAL A 77 N TYR A 68 SHEET 6 AA1 6 TYR A 121 LYS A 127 -1 O GLN A 126 N LEU A 76 SHEET 1 AA2 6 SER B 29 TYR B 30 0 SHEET 2 AA2 6 LEU B 33 SER B 38 -1 O LEU B 33 N TYR B 30 SHEET 3 AA2 6 TRP B 49 LEU B 53 -1 O ALA B 51 N LYS B 36 SHEET 4 AA2 6 ILE B 63 TYR B 70 -1 O ILE B 67 N PHE B 50 SHEET 5 AA2 6 GLU B 75 ILE B 82 -1 O VAL B 77 N TYR B 68 SHEET 6 AA2 6 TYR B 121 LYS B 127 -1 O GLN B 126 N LEU B 76 CRYST1 36.069 68.910 143.829 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006953 0.00000