HEADER DNA BINDING PROTEIN 28-FEB-23 8IK4 TITLE STRUCTURE OF DNA BINDING DOMAIN OF MCRBC ENDONUCLEASE BOUND TO TITLE 2 HEMIMETHYLATED DNA: L68F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV METHYL-DIRECTED RESTRICTION ENZYME ECOKMCRB COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ECOKMCRBC,5-METHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME B; COMPND 6 EC: 3.1.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MCRB, RGLB, B4346, JW5871; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 10 ORGANISM_TAXID: 2853804; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 14 ORGANISM_TAXID: 2853804 KEYWDS MCRB-NTD, 5-METHYLCYTOSINE, RESTRICTION ENDONUCLEASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.A.ADHAV,K.SAIKRISHNAN REVDAT 1 28-FEB-24 8IK4 0 JRNL AUTH V.A.ADHAV,K.SAIKRISHNAN JRNL TITL STRUCTURAL BASIS OF TARGET RECOGNITION BY THE DNA BINDING JRNL TITL 2 DOMAIN OF MCRBC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.3200 - 4.2000 0.97 2737 138 0.1613 0.1991 REMARK 3 2 4.2000 - 3.3300 0.98 2608 152 0.1498 0.2059 REMARK 3 3 3.3300 - 2.9100 0.96 2528 155 0.1986 0.2529 REMARK 3 4 2.9100 - 2.6500 0.98 2558 139 0.2237 0.2650 REMARK 3 5 2.6500 - 2.4600 0.98 2562 133 0.2326 0.3164 REMARK 3 6 2.4600 - 2.3100 0.98 2560 147 0.2431 0.3001 REMARK 3 7 2.3100 - 2.2000 0.95 2425 144 0.2605 0.2843 REMARK 3 8 2.2000 - 2.1000 0.97 2531 117 0.2861 0.3240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3549 REMARK 3 ANGLE : 0.482 4985 REMARK 3 CHIRALITY : 0.036 516 REMARK 3 PLANARITY : 0.002 502 REMARK 3 DIHEDRAL : 21.155 742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2390 -4.0247 28.9879 REMARK 3 T TENSOR REMARK 3 T11: 0.3899 T22: 0.6040 REMARK 3 T33: 0.2801 T12: -0.1045 REMARK 3 T13: 0.1328 T23: 0.1261 REMARK 3 L TENSOR REMARK 3 L11: 0.4813 L22: 3.5867 REMARK 3 L33: 5.0549 L12: -1.2387 REMARK 3 L13: -0.1831 L23: 1.8650 REMARK 3 S TENSOR REMARK 3 S11: -0.2275 S12: -0.6965 S13: -0.4037 REMARK 3 S21: 1.0496 S22: 0.0179 S23: 0.5105 REMARK 3 S31: 0.3200 S32: 0.1838 S33: 0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8541 6.7325 17.3622 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.3186 REMARK 3 T33: 0.3058 T12: -0.0599 REMARK 3 T13: -0.0289 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 7.2133 L22: 4.4000 REMARK 3 L33: 6.2745 L12: -2.8794 REMARK 3 L13: -2.1698 L23: 1.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.2720 S13: 0.6917 REMARK 3 S21: 0.3101 S22: -0.1193 S23: -0.1402 REMARK 3 S31: -0.0051 S32: -0.5111 S33: 0.1910 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2262 10.3340 25.2218 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.5029 REMARK 3 T33: 0.1964 T12: -0.0114 REMARK 3 T13: -0.0006 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 5.7799 L22: 7.2525 REMARK 3 L33: 3.5849 L12: 2.3137 REMARK 3 L13: -0.8906 L23: -3.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.7506 S13: 0.1602 REMARK 3 S21: 0.5856 S22: 0.2898 S23: -0.0694 REMARK 3 S31: -0.3070 S32: -0.2278 S33: -0.2540 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1285 -2.3867 28.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.8760 REMARK 3 T33: 0.3832 T12: 0.0064 REMARK 3 T13: -0.0261 T23: 0.2923 REMARK 3 L TENSOR REMARK 3 L11: 1.7474 L22: 7.1638 REMARK 3 L33: 2.1282 L12: -0.2252 REMARK 3 L13: 0.4062 L23: 0.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -1.1535 S13: -0.4570 REMARK 3 S21: 1.0007 S22: 0.2710 S23: 0.1820 REMARK 3 S31: 0.2815 S32: -0.5967 S33: -0.1006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0474 -0.5186 -3.6761 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.3044 REMARK 3 T33: 0.2824 T12: 0.1082 REMARK 3 T13: 0.0227 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.5169 L22: 1.1720 REMARK 3 L33: 3.3704 L12: 0.1841 REMARK 3 L13: -0.0186 L23: 1.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.2562 S12: -0.2697 S13: -0.3517 REMARK 3 S21: 0.2549 S22: 0.1922 S23: -0.1819 REMARK 3 S31: 0.2877 S32: 0.0912 S33: 0.1288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0579 -0.3614 -3.6981 REMARK 3 T TENSOR REMARK 3 T11: 0.4133 T22: 0.4932 REMARK 3 T33: 0.0990 T12: -0.1516 REMARK 3 T13: -0.2079 T23: 0.1930 REMARK 3 L TENSOR REMARK 3 L11: 0.4981 L22: 0.4737 REMARK 3 L33: 2.7461 L12: -0.3827 REMARK 3 L13: 0.6164 L23: -0.4322 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: -0.0282 S13: -0.2217 REMARK 3 S21: -0.3119 S22: -0.0545 S23: 0.1233 REMARK 3 S31: 0.4388 S32: -0.1254 S33: -0.2661 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1183 4.1387 -27.3267 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.2133 REMARK 3 T33: 0.2450 T12: 0.0379 REMARK 3 T13: -0.0352 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 6.0203 L22: 4.3324 REMARK 3 L33: 4.4904 L12: 1.8998 REMARK 3 L13: 0.6829 L23: -0.3056 REMARK 3 S TENSOR REMARK 3 S11: -0.2337 S12: 0.1673 S13: 0.0673 REMARK 3 S21: -0.0622 S22: 0.3425 S23: 0.4694 REMARK 3 S31: -0.2087 S32: -0.0747 S33: -0.0808 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3156 3.5657 -17.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.2239 REMARK 3 T33: 0.1867 T12: 0.0340 REMARK 3 T13: 0.0043 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.2346 L22: 2.5464 REMARK 3 L33: 5.1436 L12: -1.1227 REMARK 3 L13: 0.5253 L23: 0.6248 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: -0.1735 S13: 0.2886 REMARK 3 S21: 0.0002 S22: -0.0310 S23: 0.2942 REMARK 3 S31: -0.4455 S32: -0.6707 S33: 0.0138 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1582 -3.2050 -20.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1271 REMARK 3 T33: 0.1815 T12: -0.0120 REMARK 3 T13: 0.0037 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 3.0549 L22: 1.3216 REMARK 3 L33: 3.1030 L12: -0.2853 REMARK 3 L13: 0.4202 L23: -0.3140 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.1695 S13: -0.1243 REMARK 3 S21: -0.0723 S22: 0.1315 S23: 0.1607 REMARK 3 S31: 0.1152 S32: -0.2156 S33: -0.0009 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1411 -3.6778 -24.3082 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.1196 REMARK 3 T33: 0.1152 T12: 0.0141 REMARK 3 T13: 0.0036 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.7595 L22: 2.3323 REMARK 3 L33: 2.4128 L12: 0.3504 REMARK 3 L13: 0.0327 L23: -1.1003 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: 0.0968 S13: 0.0281 REMARK 3 S21: 0.0504 S22: 0.0980 S23: 0.0097 REMARK 3 S31: 0.1573 S32: 0.0782 S33: 0.0032 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5601 -13.6827 -19.7516 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.1195 REMARK 3 T33: 0.4276 T12: 0.0837 REMARK 3 T13: -0.0124 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.8546 L22: 3.7946 REMARK 3 L33: 3.3208 L12: -0.8391 REMARK 3 L13: -0.6004 L23: -1.5565 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.3247 S13: -0.5824 REMARK 3 S21: 0.3736 S22: 0.3628 S23: -1.1826 REMARK 3 S31: 0.7800 S32: 0.6168 S33: -0.2793 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9089 -11.2247 -34.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.5947 T22: 0.4697 REMARK 3 T33: 0.3753 T12: 0.0603 REMARK 3 T13: 0.0118 T23: -0.1388 REMARK 3 L TENSOR REMARK 3 L11: 5.0445 L22: 7.8021 REMARK 3 L33: 1.8310 L12: 6.0861 REMARK 3 L13: 1.1950 L23: 2.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.0980 S12: 1.2649 S13: -1.1063 REMARK 3 S21: -1.4875 S22: 0.2657 S23: -0.7546 REMARK 3 S31: 0.7115 S32: 0.1184 S33: -0.0669 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0140 3.0866 -28.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2221 REMARK 3 T33: 0.2128 T12: 0.0250 REMARK 3 T13: -0.0190 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.3802 L22: 1.2554 REMARK 3 L33: 3.0316 L12: 0.1491 REMARK 3 L13: 1.0054 L23: -0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.2867 S13: 0.0611 REMARK 3 S21: -0.1097 S22: -0.0625 S23: 0.0139 REMARK 3 S31: 0.0169 S32: 0.4921 S33: 0.0910 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7562 -12.1271 -32.3456 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.1699 REMARK 3 T33: 0.2332 T12: -0.0534 REMARK 3 T13: -0.0475 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.2105 L22: 3.2697 REMARK 3 L33: 2.2633 L12: -0.6687 REMARK 3 L13: -0.6303 L23: 1.1433 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.0936 S13: -0.2812 REMARK 3 S21: -0.4490 S22: -0.0502 S23: -0.2154 REMARK 3 S31: 0.5270 S32: 0.1335 S33: -0.0246 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4011 8.4336 19.0939 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.3685 REMARK 3 T33: 0.2415 T12: -0.0670 REMARK 3 T13: 0.0078 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.4378 L22: 3.0242 REMARK 3 L33: 4.7280 L12: -1.9489 REMARK 3 L13: 2.2747 L23: -0.8658 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: -0.4733 S13: 0.7330 REMARK 3 S21: 0.1363 S22: -0.2222 S23: -0.4390 REMARK 3 S31: -0.1658 S32: 0.4342 S33: 0.3156 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1939 0.4392 14.2983 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.2257 REMARK 3 T33: 0.1916 T12: -0.0342 REMARK 3 T13: -0.0055 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.4582 L22: 3.6225 REMARK 3 L33: 3.9787 L12: 0.0185 REMARK 3 L13: 0.2229 L23: -2.5894 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.0082 S13: -0.2426 REMARK 3 S21: 0.0667 S22: -0.2255 S23: -0.4090 REMARK 3 S31: -0.1425 S32: 0.6110 S33: 0.2187 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7859 -0.0693 13.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1487 REMARK 3 T33: 0.2121 T12: -0.0412 REMARK 3 T13: -0.0307 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.6798 L22: 1.3396 REMARK 3 L33: 3.3001 L12: -0.5323 REMARK 3 L13: -0.0649 L23: -0.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: 0.0528 S13: -0.5110 REMARK 3 S21: -0.0372 S22: -0.0444 S23: -0.0154 REMARK 3 S31: 0.0959 S32: -0.0331 S33: -0.0489 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3562 7.2353 18.9042 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.2037 REMARK 3 T33: 0.2015 T12: -0.0063 REMARK 3 T13: 0.0053 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.2551 L22: 4.1818 REMARK 3 L33: 5.2820 L12: -0.8199 REMARK 3 L13: 1.4526 L23: -0.4742 REMARK 3 S TENSOR REMARK 3 S11: -0.1636 S12: -0.2499 S13: 0.0084 REMARK 3 S21: -0.2292 S22: 0.1568 S23: 0.1524 REMARK 3 S31: -0.4351 S32: -0.3299 S33: -0.0761 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7376 -9.8961 14.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.3724 T22: 0.4157 REMARK 3 T33: 0.5451 T12: -0.1425 REMARK 3 T13: -0.1545 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 0.8876 REMARK 3 L33: 4.7499 L12: 0.8345 REMARK 3 L13: 1.0267 L23: 0.6243 REMARK 3 S TENSOR REMARK 3 S11: 0.2181 S12: 0.0784 S13: -0.7924 REMARK 3 S21: -0.3318 S22: 0.3879 S23: 0.4582 REMARK 3 S31: 0.7721 S32: -0.6430 S33: -0.1141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 70.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.2 M BIS-TRIS PH 5.5 AND 12-24% REMARK 280 PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.04950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.08950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.13950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.08950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.04950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.13950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 161 REMARK 465 LEU A 162 REMARK 465 GLU A 163 REMARK 465 GLY A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 PHE B 152 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 465 GLY B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 VAL B 158 REMARK 465 ILE B 159 REMARK 465 PRO B 160 REMARK 465 PRO B 161 REMARK 465 LEU B 162 REMARK 465 GLU B 163 REMARK 465 GLY B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 DT C 1 REMARK 465 DG C 2 REMARK 465 DC C 13 REMARK 465 DA D 1 REMARK 465 DG D 2 REMARK 465 DC D 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CD NE CZ NH1 NH2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 LYS B 13 CD CE NZ REMARK 470 ARG B 19 CD NE CZ NH1 NH2 REMARK 470 GLN B 93 CD OE1 NE2 REMARK 470 SER B 95 OG REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ARG B 136 CD NE CZ NH1 NH2 REMARK 470 DA C 3 P OP1 OP2 REMARK 470 DC D 3 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 35.30 -79.85 REMARK 500 TYR A 30 115.40 -160.78 REMARK 500 ASN A 61 93.35 -160.80 REMARK 500 TYR A 64 147.32 -171.03 REMARK 500 SER A 96 -111.07 54.53 REMARK 500 ALA A 123 -68.76 -106.38 REMARK 500 ASP B 25 33.11 -80.81 REMARK 500 TYR B 64 148.59 -170.42 REMARK 500 PHE B 94 -158.69 -125.83 REMARK 500 SER B 95 92.07 -161.70 REMARK 500 SER B 96 18.71 54.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 292 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH C 217 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH C 218 DISTANCE = 6.89 ANGSTROMS DBREF 8IK4 A 1 161 UNP P15005 MCRB_ECOLI 1 161 DBREF 8IK4 B 1 161 UNP P15005 MCRB_ECOLI 1 161 DBREF 8IK4 C 1 13 PDB 8IK4 8IK4 1 13 DBREF 8IK4 D 1 13 PDB 8IK4 8IK4 1 13 SEQADV 8IK4 PHE A 68 UNP P15005 LEU 68 ENGINEERED MUTATION SEQADV 8IK4 LEU A 162 UNP P15005 EXPRESSION TAG SEQADV 8IK4 GLU A 163 UNP P15005 EXPRESSION TAG SEQADV 8IK4 GLY A 164 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 165 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 166 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 167 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 168 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 169 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS A 170 UNP P15005 EXPRESSION TAG SEQADV 8IK4 PHE B 68 UNP P15005 LEU 68 ENGINEERED MUTATION SEQADV 8IK4 LEU B 162 UNP P15005 EXPRESSION TAG SEQADV 8IK4 GLU B 163 UNP P15005 EXPRESSION TAG SEQADV 8IK4 GLY B 164 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 165 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 166 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 167 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 168 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 169 UNP P15005 EXPRESSION TAG SEQADV 8IK4 HIS B 170 UNP P15005 EXPRESSION TAG SEQRES 1 A 170 MET GLU SER ILE GLN PRO TRP ILE GLU LYS PHE ILE LYS SEQRES 2 A 170 GLN ALA GLN GLN GLN ARG SER GLN SER THR LYS ASP TYR SEQRES 3 A 170 PRO THR SER TYR ARG ASN LEU ARG VAL LYS LEU SER PHE SEQRES 4 A 170 GLY TYR GLY ASN PHE THR SER ILE PRO TRP PHE ALA PHE SEQRES 5 A 170 LEU GLY GLU GLY GLN GLU ALA SER ASN GLY ILE TYR PRO SEQRES 6 A 170 VAL ILE PHE TYR TYR LYS ASP PHE ASP GLU LEU VAL LEU SEQRES 7 A 170 ALA TYR GLY ILE SER ASP THR ASN GLU PRO HIS ALA GLN SEQRES 8 A 170 TRP GLN PHE SER SER ASP ILE PRO LYS THR ILE ALA GLU SEQRES 9 A 170 TYR PHE GLN ALA THR SER GLY VAL TYR PRO LYS LYS TYR SEQRES 10 A 170 GLY GLN SER TYR TYR ALA CYS SER GLN LYS VAL SER GLN SEQRES 11 A 170 GLY ILE ASP TYR THR ARG PHE ALA SER MET LEU ASP ASN SEQRES 12 A 170 ILE ILE ASN ASP TYR LYS LEU ILE PHE ASN SER GLY LYS SEQRES 13 A 170 SER VAL ILE PRO PRO LEU GLU GLY HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS SEQRES 1 B 170 MET GLU SER ILE GLN PRO TRP ILE GLU LYS PHE ILE LYS SEQRES 2 B 170 GLN ALA GLN GLN GLN ARG SER GLN SER THR LYS ASP TYR SEQRES 3 B 170 PRO THR SER TYR ARG ASN LEU ARG VAL LYS LEU SER PHE SEQRES 4 B 170 GLY TYR GLY ASN PHE THR SER ILE PRO TRP PHE ALA PHE SEQRES 5 B 170 LEU GLY GLU GLY GLN GLU ALA SER ASN GLY ILE TYR PRO SEQRES 6 B 170 VAL ILE PHE TYR TYR LYS ASP PHE ASP GLU LEU VAL LEU SEQRES 7 B 170 ALA TYR GLY ILE SER ASP THR ASN GLU PRO HIS ALA GLN SEQRES 8 B 170 TRP GLN PHE SER SER ASP ILE PRO LYS THR ILE ALA GLU SEQRES 9 B 170 TYR PHE GLN ALA THR SER GLY VAL TYR PRO LYS LYS TYR SEQRES 10 B 170 GLY GLN SER TYR TYR ALA CYS SER GLN LYS VAL SER GLN SEQRES 11 B 170 GLY ILE ASP TYR THR ARG PHE ALA SER MET LEU ASP ASN SEQRES 12 B 170 ILE ILE ASN ASP TYR LYS LEU ILE PHE ASN SER GLY LYS SEQRES 13 B 170 SER VAL ILE PRO PRO LEU GLU GLY HIS HIS HIS HIS HIS SEQRES 14 B 170 HIS SEQRES 1 C 13 DT DG DA DG DA 5CM DC DG DG DT DA DG DC SEQRES 1 D 13 DA DG DC DT DA DC DC DG DG DT DC DT DC HET 5CM C 6 40 HET BTB C 101 14 HET BTB C 102 14 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 3 5CM C10 H16 N3 O7 P FORMUL 5 BTB 2(C8 H19 N O5) FORMUL 7 HOH *223(H2 O) HELIX 1 AA1 ILE A 4 GLN A 18 1 15 HELIX 2 AA2 LYS A 71 PHE A 73 5 3 HELIX 3 AA3 THR A 101 GLY A 111 1 11 HELIX 4 AA4 ASP A 133 SER A 154 1 22 HELIX 5 AA5 ILE B 4 GLN B 18 1 15 HELIX 6 AA6 THR B 101 GLY B 111 1 11 HELIX 7 AA7 SER B 129 GLY B 131 5 3 HELIX 8 AA8 ASP B 133 LYS B 149 1 17 SHEET 1 AA1 6 SER A 29 TYR A 30 0 SHEET 2 AA1 6 LEU A 33 SER A 38 -1 O LEU A 33 N TYR A 30 SHEET 3 AA1 6 TRP A 49 LEU A 53 -1 O ALA A 51 N LYS A 36 SHEET 4 AA1 6 ILE A 63 TYR A 70 -1 O ILE A 67 N PHE A 50 SHEET 5 AA1 6 GLU A 75 ILE A 82 -1 O VAL A 77 N PHE A 68 SHEET 6 AA1 6 TYR A 121 LYS A 127 -1 O GLN A 126 N LEU A 76 SHEET 1 AA2 6 SER B 29 TYR B 30 0 SHEET 2 AA2 6 LEU B 33 SER B 38 -1 O LEU B 33 N TYR B 30 SHEET 3 AA2 6 TRP B 49 LEU B 53 -1 O LEU B 53 N ARG B 34 SHEET 4 AA2 6 ILE B 63 TYR B 70 -1 O PRO B 65 N PHE B 52 SHEET 5 AA2 6 GLU B 75 ILE B 82 -1 O VAL B 77 N PHE B 68 SHEET 6 AA2 6 TYR B 121 LYS B 127 -1 O GLN B 126 N LEU B 76 LINK O3'A DA C 5 P A5CM C 6 1555 1555 1.61 LINK O3'B DA C 5 P B5CM C 6 1555 1555 1.61 LINK O3'A5CM C 6 P A DC C 7 1555 1555 1.61 LINK O3'B5CM C 6 P B DC C 7 1555 1555 1.61 CRYST1 36.099 70.279 144.179 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006936 0.00000