data_8IK5 # _entry.id 8IK5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8IK5 pdb_00008ik5 10.2210/pdb8ik5/pdb WWPDB D_1300035847 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8IK5 _pdbx_database_status.recvd_initial_deposition_date 2023-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email lmq123@ustc.edu.cn _pdbx_contact_author.name_first Mengqi _pdbx_contact_author.name_last Lv _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1326-3227 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lv, M.Q.' 1 ? 'Lin, L.Q.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lv, M.Q.' 1 ? primary 'Lin, L.Q.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3') ; 4493.946 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3') ; 4681.084 1 ? ? ? ? 3 polymer man 'LMX1A factor' 7981.499 1 ? ? ? ;Sequence reference for homo sapiens is not available in UniProt at the time of biocuration. Current sequence reference is from UniProt id A0A7K7QDL0. ; 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 71 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DT)(DA)(DT)(DT)(DT)(DA)(DA)(DT)(DC)(DT)(DT)(DC)' CCATATTTAATCTTC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DA)(DG)(DA)(DT)(DT)(DA)(DA)(DA)(DT)(DA)(DT)(DG)' GGAAGATTAAATATG B ? 3 'polypeptide(L)' no no HMHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR HMHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DT n 1 14 DT n 1 15 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DT n 2 13 DA n 2 14 DT n 2 15 DG n 3 1 HIS n 3 2 MET n 3 3 HIS n 3 4 LYS n 3 5 ARG n 3 6 PRO n 3 7 LYS n 3 8 ARG n 3 9 PRO n 3 10 ARG n 3 11 THR n 3 12 ILE n 3 13 LEU n 3 14 THR n 3 15 THR n 3 16 GLN n 3 17 GLN n 3 18 ARG n 3 19 ARG n 3 20 ALA n 3 21 PHE n 3 22 LYS n 3 23 ALA n 3 24 SER n 3 25 PHE n 3 26 GLU n 3 27 VAL n 3 28 SER n 3 29 SER n 3 30 LYS n 3 31 PRO n 3 32 CYS n 3 33 ARG n 3 34 LYS n 3 35 VAL n 3 36 ARG n 3 37 GLU n 3 38 THR n 3 39 LEU n 3 40 ALA n 3 41 ALA n 3 42 GLU n 3 43 THR n 3 44 GLY n 3 45 LEU n 3 46 SER n 3 47 VAL n 3 48 ARG n 3 49 VAL n 3 50 VAL n 3 51 GLN n 3 52 VAL n 3 53 TRP n 3 54 PHE n 3 55 GLN n 3 56 ASN n 3 57 GLN n 3 58 ARG n 3 59 ALA n 3 60 LYS n 3 61 MET n 3 62 LYS n 3 63 LYS n 3 64 LEU n 3 65 ALA n 3 66 ARG n 3 67 ARG n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 67 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 15 'Homo sapiens' ? 9606 ? 2 1 sample 1 15 'Homo sapiens' ? 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DC 15 15 15 DC DC A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DA 11 11 11 DA DA B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DA 13 13 13 DA DA B . n B 2 14 DT 14 14 14 DT DT B . n B 2 15 DG 15 15 15 DG DG B . n C 3 1 HIS 1 190 190 HIS HIS C . n C 3 2 MET 2 191 191 MET MET C . n C 3 3 HIS 3 192 192 HIS HIS C . n C 3 4 LYS 4 193 193 LYS LYS C . n C 3 5 ARG 5 194 194 ARG ARG C . n C 3 6 PRO 6 195 195 PRO PRO C . n C 3 7 LYS 7 196 196 LYS LYS C . n C 3 8 ARG 8 197 197 ARG ARG C . n C 3 9 PRO 9 198 198 PRO PRO C . n C 3 10 ARG 10 199 199 ARG ARG C . n C 3 11 THR 11 200 200 THR THR C . n C 3 12 ILE 12 201 201 ILE ILE C . n C 3 13 LEU 13 202 202 LEU LEU C . n C 3 14 THR 14 203 203 THR THR C . n C 3 15 THR 15 204 204 THR THR C . n C 3 16 GLN 16 205 205 GLN GLN C . n C 3 17 GLN 17 206 206 GLN GLN C . n C 3 18 ARG 18 207 207 ARG ARG C . n C 3 19 ARG 19 208 208 ARG ARG C . n C 3 20 ALA 20 209 209 ALA ALA C . n C 3 21 PHE 21 210 210 PHE PHE C . n C 3 22 LYS 22 211 211 LYS LYS C . n C 3 23 ALA 23 212 212 ALA ALA C . n C 3 24 SER 24 213 213 SER SER C . n C 3 25 PHE 25 214 214 PHE PHE C . n C 3 26 GLU 26 215 215 GLU GLU C . n C 3 27 VAL 27 216 216 VAL VAL C . n C 3 28 SER 28 217 217 SER SER C . n C 3 29 SER 29 218 218 SER SER C . n C 3 30 LYS 30 219 219 LYS LYS C . n C 3 31 PRO 31 220 220 PRO PRO C . n C 3 32 CYS 32 221 221 CYS CYS C . n C 3 33 ARG 33 222 222 ARG ARG C . n C 3 34 LYS 34 223 223 LYS LYS C . n C 3 35 VAL 35 224 224 VAL VAL C . n C 3 36 ARG 36 225 225 ARG ARG C . n C 3 37 GLU 37 226 226 GLU GLU C . n C 3 38 THR 38 227 227 THR THR C . n C 3 39 LEU 39 228 228 LEU LEU C . n C 3 40 ALA 40 229 229 ALA ALA C . n C 3 41 ALA 41 230 230 ALA ALA C . n C 3 42 GLU 42 231 231 GLU GLU C . n C 3 43 THR 43 232 232 THR THR C . n C 3 44 GLY 44 233 233 GLY GLY C . n C 3 45 LEU 45 234 234 LEU LEU C . n C 3 46 SER 46 235 235 SER SER C . n C 3 47 VAL 47 236 236 VAL VAL C . n C 3 48 ARG 48 237 237 ARG ARG C . n C 3 49 VAL 49 238 238 VAL VAL C . n C 3 50 VAL 50 239 239 VAL VAL C . n C 3 51 GLN 51 240 240 GLN GLN C . n C 3 52 VAL 52 241 241 VAL VAL C . n C 3 53 TRP 53 242 242 TRP TRP C . n C 3 54 PHE 54 243 243 PHE PHE C . n C 3 55 GLN 55 244 244 GLN GLN C . n C 3 56 ASN 56 245 245 ASN ASN C . n C 3 57 GLN 57 246 246 GLN GLN C . n C 3 58 ARG 58 247 247 ARG ARG C . n C 3 59 ALA 59 248 248 ALA ALA C . n C 3 60 LYS 60 249 249 LYS LYS C . n C 3 61 MET 61 250 250 MET MET C . n C 3 62 LYS 62 251 251 LYS LYS C . n C 3 63 LYS 63 252 252 LYS LYS C . n C 3 64 LEU 64 253 253 LEU LEU C . n C 3 65 ALA 65 254 254 ALA ALA C . n C 3 66 ARG 66 255 255 ARG ARG C . n C 3 67 ARG 67 256 256 ARG ARG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 301 201 GOL GOL C . E 4 GOL 1 302 202 GOL GOL C . F 5 HOH 1 101 81 HOH HOH A . F 5 HOH 2 102 14 HOH HOH A . F 5 HOH 3 103 49 HOH HOH A . F 5 HOH 4 104 44 HOH HOH A . F 5 HOH 5 105 19 HOH HOH A . F 5 HOH 6 106 35 HOH HOH A . F 5 HOH 7 107 38 HOH HOH A . F 5 HOH 8 108 24 HOH HOH A . F 5 HOH 9 109 34 HOH HOH A . G 5 HOH 1 101 4 HOH HOH B . G 5 HOH 2 102 16 HOH HOH B . G 5 HOH 3 103 99 HOH HOH B . G 5 HOH 4 104 36 HOH HOH B . G 5 HOH 5 105 68 HOH HOH B . G 5 HOH 6 106 28 HOH HOH B . G 5 HOH 7 107 98 HOH HOH B . G 5 HOH 8 108 29 HOH HOH B . G 5 HOH 9 109 18 HOH HOH B . G 5 HOH 10 110 22 HOH HOH B . G 5 HOH 11 111 12 HOH HOH B . G 5 HOH 12 112 13 HOH HOH B . G 5 HOH 13 113 67 HOH HOH B . G 5 HOH 14 114 78 HOH HOH B . G 5 HOH 15 115 80 HOH HOH B . G 5 HOH 16 116 37 HOH HOH B . H 5 HOH 1 401 40 HOH HOH C . H 5 HOH 2 402 62 HOH HOH C . H 5 HOH 3 403 83 HOH HOH C . H 5 HOH 4 404 31 HOH HOH C . H 5 HOH 5 405 66 HOH HOH C . H 5 HOH 6 406 7 HOH HOH C . H 5 HOH 7 407 32 HOH HOH C . H 5 HOH 8 408 59 HOH HOH C . H 5 HOH 9 409 87 HOH HOH C . H 5 HOH 10 410 1 HOH HOH C . H 5 HOH 11 411 2 HOH HOH C . H 5 HOH 12 412 3 HOH HOH C . H 5 HOH 13 413 42 HOH HOH C . H 5 HOH 14 414 54 HOH HOH C . H 5 HOH 15 415 51 HOH HOH C . H 5 HOH 16 416 9 HOH HOH C . H 5 HOH 17 417 8 HOH HOH C . H 5 HOH 18 418 27 HOH HOH C . H 5 HOH 19 419 6 HOH HOH C . H 5 HOH 20 420 53 HOH HOH C . H 5 HOH 21 421 64 HOH HOH C . H 5 HOH 22 422 86 HOH HOH C . H 5 HOH 23 423 23 HOH HOH C . H 5 HOH 24 424 26 HOH HOH C . H 5 HOH 25 425 10 HOH HOH C . H 5 HOH 26 426 70 HOH HOH C . H 5 HOH 27 427 85 HOH HOH C . H 5 HOH 28 428 41 HOH HOH C . H 5 HOH 29 429 73 HOH HOH C . H 5 HOH 30 430 88 HOH HOH C . H 5 HOH 31 431 47 HOH HOH C . H 5 HOH 32 432 25 HOH HOH C . H 5 HOH 33 433 5 HOH HOH C . H 5 HOH 34 434 65 HOH HOH C . H 5 HOH 35 435 20 HOH HOH C . H 5 HOH 36 436 52 HOH HOH C . H 5 HOH 37 437 63 HOH HOH C . H 5 HOH 38 438 55 HOH HOH C . H 5 HOH 39 439 72 HOH HOH C . H 5 HOH 40 440 100 HOH HOH C . H 5 HOH 41 441 46 HOH HOH C . H 5 HOH 42 442 90 HOH HOH C . H 5 HOH 43 443 82 HOH HOH C . H 5 HOH 44 444 74 HOH HOH C . H 5 HOH 45 445 75 HOH HOH C . H 5 HOH 46 446 15 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 193 ? CG ? C LYS 4 CG 2 1 Y 1 C LYS 193 ? CD ? C LYS 4 CD 3 1 Y 1 C LYS 193 ? CE ? C LYS 4 CE 4 1 Y 1 C LYS 193 ? NZ ? C LYS 4 NZ 5 1 Y 1 C ARG 194 ? CG ? C ARG 5 CG 6 1 Y 1 C ARG 194 ? CD ? C ARG 5 CD 7 1 Y 1 C ARG 194 ? NE ? C ARG 5 NE 8 1 Y 1 C ARG 194 ? CZ ? C ARG 5 CZ 9 1 Y 1 C ARG 194 ? NH1 ? C ARG 5 NH1 10 1 Y 1 C ARG 194 ? NH2 ? C ARG 5 NH2 11 1 Y 1 C ARG 197 ? CG ? C ARG 8 CG 12 1 Y 1 C ARG 197 ? CD ? C ARG 8 CD 13 1 Y 1 C ARG 197 ? NE ? C ARG 8 NE 14 1 Y 1 C ARG 197 ? CZ ? C ARG 8 CZ 15 1 Y 1 C ARG 197 ? NH1 ? C ARG 8 NH1 16 1 Y 1 C ARG 197 ? NH2 ? C ARG 8 NH2 17 1 Y 1 C LYS 223 ? CG ? C LYS 34 CG 18 1 Y 1 C LYS 223 ? CD ? C LYS 34 CD 19 1 Y 1 C LYS 223 ? CE ? C LYS 34 CE 20 1 Y 1 C LYS 223 ? NZ ? C LYS 34 NZ 21 1 Y 1 C ARG 256 ? CG ? C ARG 67 CG 22 1 Y 1 C ARG 256 ? CD ? C ARG 67 CD 23 1 Y 1 C ARG 256 ? NE ? C ARG 67 NE 24 1 Y 1 C ARG 256 ? CZ ? C ARG 67 CZ 25 1 Y 1 C ARG 256 ? NH1 ? C ARG 67 NH1 26 1 Y 1 C ARG 256 ? NH2 ? C ARG 67 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 3.3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8IK5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.290 _cell.length_a_esd ? _cell.length_b 46.419 _cell.length_b_esd ? _cell.length_c 96.098 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8IK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8IK5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '27% PEG MME 2000, 0.1 mM sodium cacodylate (pH 6.5)' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8IK5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.989 _reflns.d_resolution_low 27.08 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14659 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.08 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 33.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 707 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.909 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.607 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8IK5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.989 _refine.ls_d_res_low 27.077 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14659 _refine.ls_number_reflns_R_free 707 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.08 _refine.ls_percent_reflns_R_free 4.82 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2081 _refine.ls_R_factor_R_free 0.2361 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2066 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.12 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.25 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.989 _refine_hist.d_res_low 27.077 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1224 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 532 _refine_hist.pdbx_number_atoms_nucleic_acid 609 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1233 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.952 ? 1785 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 24.415 ? 637 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 200 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 122 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.989 2.1425 . . 140 2664 97.00 . . . . 0.2616 . . . . . . . . . . . 0.3224 'X-RAY DIFFRACTION' 2.1425 2.3579 . . 133 2771 100.00 . . . . 0.2376 . . . . . . . . . . . 0.3005 'X-RAY DIFFRACTION' 2.3579 2.6989 . . 139 2782 100.00 . . . . 0.2471 . . . . . . . . . . . 0.3021 'X-RAY DIFFRACTION' 2.6989 3.3993 . . 144 2794 99.00 . . . . 0.2320 . . . . . . . . . . . 0.2510 'X-RAY DIFFRACTION' 3.3993 27.077 . . 151 2941 99.00 . . . . 0.1761 . . . . . . . . . . . 0.1963 # _struct.entry_id 8IK5 _struct.title 'Transcription factor LMX1a homeobox domain in complex with Wnt1 promoter' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8IK5 _struct_keywords.text 'protein-dsDNA complex, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8IK5 8IK5 ? 1 ? 1 2 PDB 8IK5 8IK5 ? 2 ? 1 3 UNP A0A7K7QDL0_POEAT A0A7K7QDL0 ? 3 HKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 191 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8IK5 A 1 ? 15 ? 8IK5 1 ? 15 ? 1 15 2 2 8IK5 B 1 ? 15 ? 8IK5 1 ? 15 ? 1 15 3 3 8IK5 C 3 ? 67 ? A0A7K7QDL0 191 ? 255 ? 192 256 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 8IK5 HIS C 1 ? UNP A0A7K7QDL0 ? ? 'expression tag' 190 1 3 8IK5 MET C 2 ? UNP A0A7K7QDL0 ? ? 'expression tag' 191 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3740 ? 1 MORE -19 ? 1 'SSA (A^2)' 9280 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR C 14 ? SER C 28 ? THR C 203 SER C 217 1 ? 15 HELX_P HELX_P2 AA2 CYS C 32 ? GLY C 44 ? CYS C 221 GLY C 233 1 ? 13 HELX_P HELX_P3 AA3 SER C 46 ? ALA C 65 ? SER C 235 ALA C 254 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 14 N3 ? ? A DA 3 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 14 O4 ? ? A DA 3 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 7 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 7 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 9 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 9 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 10 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 10 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 14 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 14 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 15 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 15 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 15 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DA _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.378 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.041 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 8.4896 1.7893 26.4771 0.3489 ? 0.0492 ? 0.0023 ? 0.5578 ? 0.0330 ? 0.3742 ? 4.6054 ? -0.7931 ? 0.7393 ? 5.9212 ? -0.1658 ? 7.8895 ? 0.2410 ? -0.2628 ? 0.0654 ? 0.1530 ? 0.2350 ? 0.7124 ? -0.2400 ? -1.5128 ? -0.3653 ? 2 'X-RAY DIFFRACTION' ? refined 9.2975 -0.6030 22.7996 0.3560 ? 0.0313 ? -0.0282 ? 0.5283 ? -0.0038 ? 0.3133 ? 5.1667 ? -0.1793 ? -0.3516 ? 5.4248 ? -1.1334 ? 6.7879 ? 0.2526 ? 0.2194 ? -0.0934 ? -0.2967 ? 0.1525 ? 0.5261 ? -0.1496 ? -1.5371 ? -0.3226 ? 3 'X-RAY DIFFRACTION' ? refined 19.8454 -1.1630 19.8356 0.2543 ? 0.0310 ? 0.0312 ? 0.3288 ? -0.0253 ? 0.1941 ? 3.9082 ? -0.3470 ? 0.4080 ? 7.7134 ? 0.1912 ? 3.8750 ? 0.0774 ? 0.4636 ? -0.0833 ? -0.4048 ? -0.2153 ? -0.0034 ? -0.0502 ? -0.2580 ? 0.0860 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 15) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 15) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 190 through 256) ; # _pdbx_entry_details.entry_id 8IK5 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 DA OP3 O N N 72 DA P P N N 73 DA OP1 O N N 74 DA OP2 O N N 75 DA "O5'" O N N 76 DA "C5'" C N N 77 DA "C4'" C N R 78 DA "O4'" O N N 79 DA "C3'" C N S 80 DA "O3'" O N N 81 DA "C2'" C N N 82 DA "C1'" C N R 83 DA N9 N Y N 84 DA C8 C Y N 85 DA N7 N Y N 86 DA C5 C Y N 87 DA C6 C Y N 88 DA N6 N N N 89 DA N1 N Y N 90 DA C2 C Y N 91 DA N3 N Y N 92 DA C4 C Y N 93 DA HOP3 H N N 94 DA HOP2 H N N 95 DA "H5'" H N N 96 DA "H5''" H N N 97 DA "H4'" H N N 98 DA "H3'" H N N 99 DA "HO3'" H N N 100 DA "H2'" H N N 101 DA "H2''" H N N 102 DA "H1'" H N N 103 DA H8 H N N 104 DA H61 H N N 105 DA H62 H N N 106 DA H2 H N N 107 DC OP3 O N N 108 DC P P N N 109 DC OP1 O N N 110 DC OP2 O N N 111 DC "O5'" O N N 112 DC "C5'" C N N 113 DC "C4'" C N R 114 DC "O4'" O N N 115 DC "C3'" C N S 116 DC "O3'" O N N 117 DC "C2'" C N N 118 DC "C1'" C N R 119 DC N1 N N N 120 DC C2 C N N 121 DC O2 O N N 122 DC N3 N N N 123 DC C4 C N N 124 DC N4 N N N 125 DC C5 C N N 126 DC C6 C N N 127 DC HOP3 H N N 128 DC HOP2 H N N 129 DC "H5'" H N N 130 DC "H5''" H N N 131 DC "H4'" H N N 132 DC "H3'" H N N 133 DC "HO3'" H N N 134 DC "H2'" H N N 135 DC "H2''" H N N 136 DC "H1'" H N N 137 DC H41 H N N 138 DC H42 H N N 139 DC H5 H N N 140 DC H6 H N N 141 DG OP3 O N N 142 DG P P N N 143 DG OP1 O N N 144 DG OP2 O N N 145 DG "O5'" O N N 146 DG "C5'" C N N 147 DG "C4'" C N R 148 DG "O4'" O N N 149 DG "C3'" C N S 150 DG "O3'" O N N 151 DG "C2'" C N N 152 DG "C1'" C N R 153 DG N9 N Y N 154 DG C8 C Y N 155 DG N7 N Y N 156 DG C5 C Y N 157 DG C6 C N N 158 DG O6 O N N 159 DG N1 N N N 160 DG C2 C N N 161 DG N2 N N N 162 DG N3 N N N 163 DG C4 C Y N 164 DG HOP3 H N N 165 DG HOP2 H N N 166 DG "H5'" H N N 167 DG "H5''" H N N 168 DG "H4'" H N N 169 DG "H3'" H N N 170 DG "HO3'" H N N 171 DG "H2'" H N N 172 DG "H2''" H N N 173 DG "H1'" H N N 174 DG H8 H N N 175 DG H1 H N N 176 DG H21 H N N 177 DG H22 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 GLN N N N N 215 GLN CA C N S 216 GLN C C N N 217 GLN O O N N 218 GLN CB C N N 219 GLN CG C N N 220 GLN CD C N N 221 GLN OE1 O N N 222 GLN NE2 N N N 223 GLN OXT O N N 224 GLN H H N N 225 GLN H2 H N N 226 GLN HA H N N 227 GLN HB2 H N N 228 GLN HB3 H N N 229 GLN HG2 H N N 230 GLN HG3 H N N 231 GLN HE21 H N N 232 GLN HE22 H N N 233 GLN HXT H N N 234 GLU N N N N 235 GLU CA C N S 236 GLU C C N N 237 GLU O O N N 238 GLU CB C N N 239 GLU CG C N N 240 GLU CD C N N 241 GLU OE1 O N N 242 GLU OE2 O N N 243 GLU OXT O N N 244 GLU H H N N 245 GLU H2 H N N 246 GLU HA H N N 247 GLU HB2 H N N 248 GLU HB3 H N N 249 GLU HG2 H N N 250 GLU HG3 H N N 251 GLU HE2 H N N 252 GLU HXT H N N 253 GLY N N N N 254 GLY CA C N N 255 GLY C C N N 256 GLY O O N N 257 GLY OXT O N N 258 GLY H H N N 259 GLY H2 H N N 260 GLY HA2 H N N 261 GLY HA3 H N N 262 GLY HXT H N N 263 GOL C1 C N N 264 GOL O1 O N N 265 GOL C2 C N N 266 GOL O2 O N N 267 GOL C3 C N N 268 GOL O3 O N N 269 GOL H11 H N N 270 GOL H12 H N N 271 GOL HO1 H N N 272 GOL H2 H N N 273 GOL HO2 H N N 274 GOL H31 H N N 275 GOL H32 H N N 276 GOL HO3 H N N 277 HIS N N N N 278 HIS CA C N S 279 HIS C C N N 280 HIS O O N N 281 HIS CB C N N 282 HIS CG C Y N 283 HIS ND1 N Y N 284 HIS CD2 C Y N 285 HIS CE1 C Y N 286 HIS NE2 N Y N 287 HIS OXT O N N 288 HIS H H N N 289 HIS H2 H N N 290 HIS HA H N N 291 HIS HB2 H N N 292 HIS HB3 H N N 293 HIS HD1 H N N 294 HIS HD2 H N N 295 HIS HE1 H N N 296 HIS HE2 H N N 297 HIS HXT H N N 298 HOH O O N N 299 HOH H1 H N N 300 HOH H2 H N N 301 ILE N N N N 302 ILE CA C N S 303 ILE C C N N 304 ILE O O N N 305 ILE CB C N S 306 ILE CG1 C N N 307 ILE CG2 C N N 308 ILE CD1 C N N 309 ILE OXT O N N 310 ILE H H N N 311 ILE H2 H N N 312 ILE HA H N N 313 ILE HB H N N 314 ILE HG12 H N N 315 ILE HG13 H N N 316 ILE HG21 H N N 317 ILE HG22 H N N 318 ILE HG23 H N N 319 ILE HD11 H N N 320 ILE HD12 H N N 321 ILE HD13 H N N 322 ILE HXT H N N 323 LEU N N N N 324 LEU CA C N S 325 LEU C C N N 326 LEU O O N N 327 LEU CB C N N 328 LEU CG C N N 329 LEU CD1 C N N 330 LEU CD2 C N N 331 LEU OXT O N N 332 LEU H H N N 333 LEU H2 H N N 334 LEU HA H N N 335 LEU HB2 H N N 336 LEU HB3 H N N 337 LEU HG H N N 338 LEU HD11 H N N 339 LEU HD12 H N N 340 LEU HD13 H N N 341 LEU HD21 H N N 342 LEU HD22 H N N 343 LEU HD23 H N N 344 LEU HXT H N N 345 LYS N N N N 346 LYS CA C N S 347 LYS C C N N 348 LYS O O N N 349 LYS CB C N N 350 LYS CG C N N 351 LYS CD C N N 352 LYS CE C N N 353 LYS NZ N N N 354 LYS OXT O N N 355 LYS H H N N 356 LYS H2 H N N 357 LYS HA H N N 358 LYS HB2 H N N 359 LYS HB3 H N N 360 LYS HG2 H N N 361 LYS HG3 H N N 362 LYS HD2 H N N 363 LYS HD3 H N N 364 LYS HE2 H N N 365 LYS HE3 H N N 366 LYS HZ1 H N N 367 LYS HZ2 H N N 368 LYS HZ3 H N N 369 LYS HXT H N N 370 MET N N N N 371 MET CA C N S 372 MET C C N N 373 MET O O N N 374 MET CB C N N 375 MET CG C N N 376 MET SD S N N 377 MET CE C N N 378 MET OXT O N N 379 MET H H N N 380 MET H2 H N N 381 MET HA H N N 382 MET HB2 H N N 383 MET HB3 H N N 384 MET HG2 H N N 385 MET HG3 H N N 386 MET HE1 H N N 387 MET HE2 H N N 388 MET HE3 H N N 389 MET HXT H N N 390 PHE N N N N 391 PHE CA C N S 392 PHE C C N N 393 PHE O O N N 394 PHE CB C N N 395 PHE CG C Y N 396 PHE CD1 C Y N 397 PHE CD2 C Y N 398 PHE CE1 C Y N 399 PHE CE2 C Y N 400 PHE CZ C Y N 401 PHE OXT O N N 402 PHE H H N N 403 PHE H2 H N N 404 PHE HA H N N 405 PHE HB2 H N N 406 PHE HB3 H N N 407 PHE HD1 H N N 408 PHE HD2 H N N 409 PHE HE1 H N N 410 PHE HE2 H N N 411 PHE HZ H N N 412 PHE HXT H N N 413 PRO N N N N 414 PRO CA C N S 415 PRO C C N N 416 PRO O O N N 417 PRO CB C N N 418 PRO CG C N N 419 PRO CD C N N 420 PRO OXT O N N 421 PRO H H N N 422 PRO HA H N N 423 PRO HB2 H N N 424 PRO HB3 H N N 425 PRO HG2 H N N 426 PRO HG3 H N N 427 PRO HD2 H N N 428 PRO HD3 H N N 429 PRO HXT H N N 430 SER N N N N 431 SER CA C N S 432 SER C C N N 433 SER O O N N 434 SER CB C N N 435 SER OG O N N 436 SER OXT O N N 437 SER H H N N 438 SER H2 H N N 439 SER HA H N N 440 SER HB2 H N N 441 SER HB3 H N N 442 SER HG H N N 443 SER HXT H N N 444 THR N N N N 445 THR CA C N S 446 THR C C N N 447 THR O O N N 448 THR CB C N R 449 THR OG1 O N N 450 THR CG2 C N N 451 THR OXT O N N 452 THR H H N N 453 THR H2 H N N 454 THR HA H N N 455 THR HB H N N 456 THR HG1 H N N 457 THR HG21 H N N 458 THR HG22 H N N 459 THR HG23 H N N 460 THR HXT H N N 461 TRP N N N N 462 TRP CA C N S 463 TRP C C N N 464 TRP O O N N 465 TRP CB C N N 466 TRP CG C Y N 467 TRP CD1 C Y N 468 TRP CD2 C Y N 469 TRP NE1 N Y N 470 TRP CE2 C Y N 471 TRP CE3 C Y N 472 TRP CZ2 C Y N 473 TRP CZ3 C Y N 474 TRP CH2 C Y N 475 TRP OXT O N N 476 TRP H H N N 477 TRP H2 H N N 478 TRP HA H N N 479 TRP HB2 H N N 480 TRP HB3 H N N 481 TRP HD1 H N N 482 TRP HE1 H N N 483 TRP HE3 H N N 484 TRP HZ2 H N N 485 TRP HZ3 H N N 486 TRP HH2 H N N 487 TRP HXT H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 DA OP3 P sing N N 68 DA OP3 HOP3 sing N N 69 DA P OP1 doub N N 70 DA P OP2 sing N N 71 DA P "O5'" sing N N 72 DA OP2 HOP2 sing N N 73 DA "O5'" "C5'" sing N N 74 DA "C5'" "C4'" sing N N 75 DA "C5'" "H5'" sing N N 76 DA "C5'" "H5''" sing N N 77 DA "C4'" "O4'" sing N N 78 DA "C4'" "C3'" sing N N 79 DA "C4'" "H4'" sing N N 80 DA "O4'" "C1'" sing N N 81 DA "C3'" "O3'" sing N N 82 DA "C3'" "C2'" sing N N 83 DA "C3'" "H3'" sing N N 84 DA "O3'" "HO3'" sing N N 85 DA "C2'" "C1'" sing N N 86 DA "C2'" "H2'" sing N N 87 DA "C2'" "H2''" sing N N 88 DA "C1'" N9 sing N N 89 DA "C1'" "H1'" sing N N 90 DA N9 C8 sing Y N 91 DA N9 C4 sing Y N 92 DA C8 N7 doub Y N 93 DA C8 H8 sing N N 94 DA N7 C5 sing Y N 95 DA C5 C6 sing Y N 96 DA C5 C4 doub Y N 97 DA C6 N6 sing N N 98 DA C6 N1 doub Y N 99 DA N6 H61 sing N N 100 DA N6 H62 sing N N 101 DA N1 C2 sing Y N 102 DA C2 N3 doub Y N 103 DA C2 H2 sing N N 104 DA N3 C4 sing Y N 105 DC OP3 P sing N N 106 DC OP3 HOP3 sing N N 107 DC P OP1 doub N N 108 DC P OP2 sing N N 109 DC P "O5'" sing N N 110 DC OP2 HOP2 sing N N 111 DC "O5'" "C5'" sing N N 112 DC "C5'" "C4'" sing N N 113 DC "C5'" "H5'" sing N N 114 DC "C5'" "H5''" sing N N 115 DC "C4'" "O4'" sing N N 116 DC "C4'" "C3'" sing N N 117 DC "C4'" "H4'" sing N N 118 DC "O4'" "C1'" sing N N 119 DC "C3'" "O3'" sing N N 120 DC "C3'" "C2'" sing N N 121 DC "C3'" "H3'" sing N N 122 DC "O3'" "HO3'" sing N N 123 DC "C2'" "C1'" sing N N 124 DC "C2'" "H2'" sing N N 125 DC "C2'" "H2''" sing N N 126 DC "C1'" N1 sing N N 127 DC "C1'" "H1'" sing N N 128 DC N1 C2 sing N N 129 DC N1 C6 sing N N 130 DC C2 O2 doub N N 131 DC C2 N3 sing N N 132 DC N3 C4 doub N N 133 DC C4 N4 sing N N 134 DC C4 C5 sing N N 135 DC N4 H41 sing N N 136 DC N4 H42 sing N N 137 DC C5 C6 doub N N 138 DC C5 H5 sing N N 139 DC C6 H6 sing N N 140 DG OP3 P sing N N 141 DG OP3 HOP3 sing N N 142 DG P OP1 doub N N 143 DG P OP2 sing N N 144 DG P "O5'" sing N N 145 DG OP2 HOP2 sing N N 146 DG "O5'" "C5'" sing N N 147 DG "C5'" "C4'" sing N N 148 DG "C5'" "H5'" sing N N 149 DG "C5'" "H5''" sing N N 150 DG "C4'" "O4'" sing N N 151 DG "C4'" "C3'" sing N N 152 DG "C4'" "H4'" sing N N 153 DG "O4'" "C1'" sing N N 154 DG "C3'" "O3'" sing N N 155 DG "C3'" "C2'" sing N N 156 DG "C3'" "H3'" sing N N 157 DG "O3'" "HO3'" sing N N 158 DG "C2'" "C1'" sing N N 159 DG "C2'" "H2'" sing N N 160 DG "C2'" "H2''" sing N N 161 DG "C1'" N9 sing N N 162 DG "C1'" "H1'" sing N N 163 DG N9 C8 sing Y N 164 DG N9 C4 sing Y N 165 DG C8 N7 doub Y N 166 DG C8 H8 sing N N 167 DG N7 C5 sing Y N 168 DG C5 C6 sing N N 169 DG C5 C4 doub Y N 170 DG C6 O6 doub N N 171 DG C6 N1 sing N N 172 DG N1 C2 sing N N 173 DG N1 H1 sing N N 174 DG C2 N2 sing N N 175 DG C2 N3 doub N N 176 DG N2 H21 sing N N 177 DG N2 H22 sing N N 178 DG N3 C4 sing N N 179 DT OP3 P sing N N 180 DT OP3 HOP3 sing N N 181 DT P OP1 doub N N 182 DT P OP2 sing N N 183 DT P "O5'" sing N N 184 DT OP2 HOP2 sing N N 185 DT "O5'" "C5'" sing N N 186 DT "C5'" "C4'" sing N N 187 DT "C5'" "H5'" sing N N 188 DT "C5'" "H5''" sing N N 189 DT "C4'" "O4'" sing N N 190 DT "C4'" "C3'" sing N N 191 DT "C4'" "H4'" sing N N 192 DT "O4'" "C1'" sing N N 193 DT "C3'" "O3'" sing N N 194 DT "C3'" "C2'" sing N N 195 DT "C3'" "H3'" sing N N 196 DT "O3'" "HO3'" sing N N 197 DT "C2'" "C1'" sing N N 198 DT "C2'" "H2'" sing N N 199 DT "C2'" "H2''" sing N N 200 DT "C1'" N1 sing N N 201 DT "C1'" "H1'" sing N N 202 DT N1 C2 sing N N 203 DT N1 C6 sing N N 204 DT C2 O2 doub N N 205 DT C2 N3 sing N N 206 DT N3 C4 sing N N 207 DT N3 H3 sing N N 208 DT C4 O4 doub N N 209 DT C4 C5 sing N N 210 DT C5 C7 sing N N 211 DT C5 C6 doub N N 212 DT C7 H71 sing N N 213 DT C7 H72 sing N N 214 DT C7 H73 sing N N 215 DT C6 H6 sing N N 216 GLN N CA sing N N 217 GLN N H sing N N 218 GLN N H2 sing N N 219 GLN CA C sing N N 220 GLN CA CB sing N N 221 GLN CA HA sing N N 222 GLN C O doub N N 223 GLN C OXT sing N N 224 GLN CB CG sing N N 225 GLN CB HB2 sing N N 226 GLN CB HB3 sing N N 227 GLN CG CD sing N N 228 GLN CG HG2 sing N N 229 GLN CG HG3 sing N N 230 GLN CD OE1 doub N N 231 GLN CD NE2 sing N N 232 GLN NE2 HE21 sing N N 233 GLN NE2 HE22 sing N N 234 GLN OXT HXT sing N N 235 GLU N CA sing N N 236 GLU N H sing N N 237 GLU N H2 sing N N 238 GLU CA C sing N N 239 GLU CA CB sing N N 240 GLU CA HA sing N N 241 GLU C O doub N N 242 GLU C OXT sing N N 243 GLU CB CG sing N N 244 GLU CB HB2 sing N N 245 GLU CB HB3 sing N N 246 GLU CG CD sing N N 247 GLU CG HG2 sing N N 248 GLU CG HG3 sing N N 249 GLU CD OE1 doub N N 250 GLU CD OE2 sing N N 251 GLU OE2 HE2 sing N N 252 GLU OXT HXT sing N N 253 GLY N CA sing N N 254 GLY N H sing N N 255 GLY N H2 sing N N 256 GLY CA C sing N N 257 GLY CA HA2 sing N N 258 GLY CA HA3 sing N N 259 GLY C O doub N N 260 GLY C OXT sing N N 261 GLY OXT HXT sing N N 262 GOL C1 O1 sing N N 263 GOL C1 C2 sing N N 264 GOL C1 H11 sing N N 265 GOL C1 H12 sing N N 266 GOL O1 HO1 sing N N 267 GOL C2 O2 sing N N 268 GOL C2 C3 sing N N 269 GOL C2 H2 sing N N 270 GOL O2 HO2 sing N N 271 GOL C3 O3 sing N N 272 GOL C3 H31 sing N N 273 GOL C3 H32 sing N N 274 GOL O3 HO3 sing N N 275 HIS N CA sing N N 276 HIS N H sing N N 277 HIS N H2 sing N N 278 HIS CA C sing N N 279 HIS CA CB sing N N 280 HIS CA HA sing N N 281 HIS C O doub N N 282 HIS C OXT sing N N 283 HIS CB CG sing N N 284 HIS CB HB2 sing N N 285 HIS CB HB3 sing N N 286 HIS CG ND1 sing Y N 287 HIS CG CD2 doub Y N 288 HIS ND1 CE1 doub Y N 289 HIS ND1 HD1 sing N N 290 HIS CD2 NE2 sing Y N 291 HIS CD2 HD2 sing N N 292 HIS CE1 NE2 sing Y N 293 HIS CE1 HE1 sing N N 294 HIS NE2 HE2 sing N N 295 HIS OXT HXT sing N N 296 HOH O H1 sing N N 297 HOH O H2 sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 VAL N CA sing N N 481 VAL N H sing N N 482 VAL N H2 sing N N 483 VAL CA C sing N N 484 VAL CA CB sing N N 485 VAL CA HA sing N N 486 VAL C O doub N N 487 VAL C OXT sing N N 488 VAL CB CG1 sing N N 489 VAL CB CG2 sing N N 490 VAL CB HB sing N N 491 VAL CG1 HG11 sing N N 492 VAL CG1 HG12 sing N N 493 VAL CG1 HG13 sing N N 494 VAL CG2 HG21 sing N N 495 VAL CG2 HG22 sing N N 496 VAL CG2 HG23 sing N N 497 VAL OXT HXT sing N N 498 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8IK5 'double helix' 8IK5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 15 1_555 -0.081 -0.170 0.129 -2.429 -6.984 2.952 1 A_DC2:DG15_B A 2 ? B 15 ? 19 1 1 A DA 3 1_555 B DT 14 1_555 0.097 -0.061 0.471 7.990 -9.894 4.527 2 A_DA3:DT14_B A 3 ? B 14 ? 20 1 1 A DT 4 1_555 B DA 13 1_555 -0.019 -0.200 0.381 3.524 -7.881 1.188 3 A_DT4:DA13_B A 4 ? B 13 ? 20 1 1 A DA 5 1_555 B DT 12 1_555 0.297 -0.088 0.157 -1.438 -10.542 4.259 4 A_DA5:DT12_B A 5 ? B 12 ? 20 1 1 A DT 6 1_555 B DA 11 1_555 -0.021 -0.160 0.163 -1.808 -16.568 3.072 5 A_DT6:DA11_B A 6 ? B 11 ? 20 1 1 A DT 7 1_555 B DA 10 1_555 -0.015 -0.236 0.092 -5.350 -14.717 3.139 6 A_DT7:DA10_B A 7 ? B 10 ? 20 1 1 A DT 8 1_555 B DA 9 1_555 -0.089 -0.098 -0.168 -9.629 -16.811 1.606 7 A_DT8:DA9_B A 8 ? B 9 ? 20 1 1 A DA 9 1_555 B DT 8 1_555 0.063 -0.202 -0.215 -5.597 -16.276 2.694 8 A_DA9:DT8_B A 9 ? B 8 ? 20 1 1 A DA 10 1_555 B DT 7 1_555 0.169 -0.160 0.201 3.054 -12.691 -0.231 9 A_DA10:DT7_B A 10 ? B 7 ? 20 1 1 A DT 11 1_555 B DA 6 1_555 0.158 -0.160 -0.114 6.694 -13.848 2.149 10 A_DT11:DA6_B A 11 ? B 6 ? 20 1 1 A DC 12 1_555 B DG 5 1_555 0.140 -0.282 -0.003 1.741 -19.226 -0.187 11 A_DC12:DG5_B A 12 ? B 5 ? 19 1 1 A DT 13 1_555 B DA 4 1_555 -0.521 -0.117 0.092 -8.595 -8.563 9.253 12 A_DT13:DA4_B A 13 ? B 4 ? 20 1 1 A DT 14 1_555 B DA 3 1_555 -0.195 -0.143 0.075 -2.023 -6.883 1.542 13 A_DT14:DA3_B A 14 ? B 3 ? 20 1 1 A DC 15 1_555 B DG 2 1_555 0.273 -0.078 0.161 2.010 -15.917 2.925 14 A_DC15:DG2_B A 15 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 15 1_555 A DA 3 1_555 B DT 14 1_555 -0.030 0.618 2.982 -3.695 4.150 39.695 0.465 -0.345 3.020 6.076 5.409 40.067 1 AA_DC2DA3:DT14DG15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DA 3 1_555 B DT 14 1_555 A DT 4 1_555 B DA 13 1_555 0.007 -0.892 3.438 -0.026 -3.237 31.910 -0.996 -0.018 3.509 -5.869 0.046 32.070 2 AA_DA3DT4:DA13DT14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DT 4 1_555 B DA 13 1_555 A DA 5 1_555 B DT 12 1_555 -0.002 -0.690 3.299 1.345 -1.464 39.532 -0.846 0.163 3.319 -2.163 -1.988 39.580 3 AA_DT4DA5:DT12DA13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 5 1_555 B DT 12 1_555 A DT 6 1_555 B DA 11 1_555 -0.284 -0.566 3.234 -0.308 -4.191 32.048 -0.274 0.455 3.282 -7.551 0.554 32.315 4 AA_DA5DT6:DA11DT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DT 6 1_555 B DA 11 1_555 A DT 7 1_555 B DA 10 1_555 -0.010 -0.347 3.308 0.189 -5.008 37.020 0.131 0.042 3.325 -7.842 -0.295 37.346 5 AA_DT6DT7:DA10DA11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DT 7 1_555 B DA 10 1_555 A DT 8 1_555 B DA 9 1_555 -0.127 -0.182 3.196 2.307 2.482 37.912 -0.585 0.480 3.165 3.811 -3.543 38.058 6 AA_DT7DT8:DA9DA10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A DT 8 1_555 B DA 9 1_555 A DA 9 1_555 B DT 8 1_555 0.013 0.962 3.364 -2.415 8.444 34.024 0.250 -0.406 3.487 14.141 4.045 35.107 7 AA_DT8DA9:DT8DA9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A DA 9 1_555 B DT 8 1_555 A DA 10 1_555 B DT 7 1_555 0.262 -0.421 2.982 -2.660 3.655 30.843 -1.412 -0.944 2.882 6.826 4.968 31.165 8 AA_DA9DA10:DT7DT8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A DA 10 1_555 B DT 7 1_555 A DT 11 1_555 B DA 6 1_555 0.723 -0.933 3.176 3.151 0.207 28.290 -1.945 -0.762 3.229 0.423 -6.422 28.462 9 AA_DA10DT11:DA6DT7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A DT 11 1_555 B DA 6 1_555 A DC 12 1_555 B DG 5 1_555 -0.222 -0.163 3.376 1.041 -0.431 39.666 -0.188 0.452 3.371 -0.634 -1.534 39.681 10 AA_DT11DC12:DG5DA6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A DC 12 1_555 B DG 5 1_555 A DT 13 1_555 B DA 4 1_555 1.447 0.026 3.424 5.422 3.763 35.533 -0.533 -1.506 3.583 6.101 -8.791 36.121 11 AA_DC12DT13:DA4DG5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A DT 13 1_555 B DA 4 1_555 A DT 14 1_555 B DA 3 1_555 -0.733 0.134 3.269 0.302 2.675 32.045 -0.236 1.377 3.262 4.835 -0.546 32.155 12 AA_DT13DT14:DA3DA4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 A DT 14 1_555 B DA 3 1_555 A DC 15 1_555 B DG 2 1_555 0.221 1.176 3.249 0.118 -5.442 42.575 2.134 -0.290 3.083 -7.458 -0.161 42.905 13 AA_DT14DC15:DG2DA3_BB A 14 ? B 3 ? A 15 ? B 2 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number '32293213, 32100958, 32090042, 31870760' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5HOD _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8IK5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021603 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010406 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_