data_8IKB # _entry.id 8IKB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8IKB pdb_00008ikb 10.2210/pdb8ikb/pdb WWPDB D_1300035886 ? ? EMDB EMD-35508 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8IKB _pdbx_database_status.recvd_initial_deposition_date 2023-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of hnRAC1-2I fibril.' _pdbx_database_related.db_id EMD-35508 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dannielee@sjtu.edu.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, D.N.' 1 ? 'Ma, Y.Y.' 2 ? 'Li, D.' 3 ? 'Dai, B.' 4 ? 'Liu, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of hnRAC1-2I fibril.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.N.' 1 ? primary 'Ma, Y.Y.' 2 ? primary 'Li, D.' 3 ? primary 'Dai, B.' 4 ? primary 'Liu, C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description GLY-PHI-GLY-GLY-ASN-ASP-ASN-PHE-GLY _entity.formula_weight 1009.760 _entity.pdbx_number_of_molecules 28 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'G(PHI)GGNDNFG' _entity_poly.pdbx_seq_one_letter_code_can GFGGNDNFG _entity_poly.pdbx_strand_id D,E,F,I,J,L,M,P,S,T,W,X,Z,a,c,d,e,i,j,m,p,q,s,t,w,x,0,3 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHI n 1 3 GLY n 1 4 GLY n 1 5 ASN n 1 6 ASP n 1 7 ASN n 1 8 PHE n 1 9 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHI 'L-peptide linking' n IODO-PHENYLALANINE ? 'C9 H10 I N O2' 291.086 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 215 215 GLY GLY D . n A 1 2 PHI 2 216 216 PHI PHI D . n A 1 3 GLY 3 217 217 GLY GLY D . n A 1 4 GLY 4 218 218 GLY GLY D . n A 1 5 ASN 5 219 219 ASN ASN D . n A 1 6 ASP 6 220 220 ASP ASP D . n A 1 7 ASN 7 221 221 ASN ASN D . n A 1 8 PHE 8 222 222 PHE PHE D . n A 1 9 GLY 9 223 223 GLY GLY D . n B 1 1 GLY 1 215 215 GLY GLY E . n B 1 2 PHI 2 216 216 PHI PHI E . n B 1 3 GLY 3 217 217 GLY GLY E . n B 1 4 GLY 4 218 218 GLY GLY E . n B 1 5 ASN 5 219 219 ASN ASN E . n B 1 6 ASP 6 220 220 ASP ASP E . n B 1 7 ASN 7 221 221 ASN ASN E . n B 1 8 PHE 8 222 222 PHE PHE E . n B 1 9 GLY 9 223 223 GLY GLY E . n C 1 1 GLY 1 215 215 GLY GLY F . n C 1 2 PHI 2 216 216 PHI PHI F . n C 1 3 GLY 3 217 217 GLY GLY F . n C 1 4 GLY 4 218 218 GLY GLY F . n C 1 5 ASN 5 219 219 ASN ASN F . n C 1 6 ASP 6 220 220 ASP ASP F . n C 1 7 ASN 7 221 221 ASN ASN F . n C 1 8 PHE 8 222 222 PHE PHE F . n C 1 9 GLY 9 223 223 GLY GLY F . n D 1 1 GLY 1 215 215 GLY GLY I . n D 1 2 PHI 2 216 216 PHI PHI I . n D 1 3 GLY 3 217 217 GLY GLY I . n D 1 4 GLY 4 218 218 GLY GLY I . n D 1 5 ASN 5 219 219 ASN ASN I . n D 1 6 ASP 6 220 220 ASP ASP I . n D 1 7 ASN 7 221 221 ASN ASN I . n D 1 8 PHE 8 222 222 PHE PHE I . n D 1 9 GLY 9 223 223 GLY GLY I . n E 1 1 GLY 1 215 215 GLY GLY J . n E 1 2 PHI 2 216 216 PHI PHI J . n E 1 3 GLY 3 217 217 GLY GLY J . n E 1 4 GLY 4 218 218 GLY GLY J . n E 1 5 ASN 5 219 219 ASN ASN J . n E 1 6 ASP 6 220 220 ASP ASP J . n E 1 7 ASN 7 221 221 ASN ASN J . n E 1 8 PHE 8 222 222 PHE PHE J . n E 1 9 GLY 9 223 223 GLY GLY J . n F 1 1 GLY 1 215 215 GLY GLY L . n F 1 2 PHI 2 216 216 PHI PHI L . n F 1 3 GLY 3 217 217 GLY GLY L . n F 1 4 GLY 4 218 218 GLY GLY L . n F 1 5 ASN 5 219 219 ASN ASN L . n F 1 6 ASP 6 220 220 ASP ASP L . n F 1 7 ASN 7 221 221 ASN ASN L . n F 1 8 PHE 8 222 222 PHE PHE L . n F 1 9 GLY 9 223 223 GLY GLY L . n G 1 1 GLY 1 215 215 GLY GLY M . n G 1 2 PHI 2 216 216 PHI PHI M . n G 1 3 GLY 3 217 217 GLY GLY M . n G 1 4 GLY 4 218 218 GLY GLY M . n G 1 5 ASN 5 219 219 ASN ASN M . n G 1 6 ASP 6 220 220 ASP ASP M . n G 1 7 ASN 7 221 221 ASN ASN M . n G 1 8 PHE 8 222 222 PHE PHE M . n G 1 9 GLY 9 223 223 GLY GLY M . n H 1 1 GLY 1 215 215 GLY GLY P . n H 1 2 PHI 2 216 216 PHI PHI P . n H 1 3 GLY 3 217 217 GLY GLY P . n H 1 4 GLY 4 218 218 GLY GLY P . n H 1 5 ASN 5 219 219 ASN ASN P . n H 1 6 ASP 6 220 220 ASP ASP P . n H 1 7 ASN 7 221 221 ASN ASN P . n H 1 8 PHE 8 222 222 PHE PHE P . n H 1 9 GLY 9 223 223 GLY GLY P . n I 1 1 GLY 1 215 215 GLY GLY S . n I 1 2 PHI 2 216 216 PHI PHI S . n I 1 3 GLY 3 217 217 GLY GLY S . n I 1 4 GLY 4 218 218 GLY GLY S . n I 1 5 ASN 5 219 219 ASN ASN S . n I 1 6 ASP 6 220 220 ASP ASP S . n I 1 7 ASN 7 221 221 ASN ASN S . n I 1 8 PHE 8 222 222 PHE PHE S . n I 1 9 GLY 9 223 223 GLY GLY S . n J 1 1 GLY 1 215 215 GLY GLY T . n J 1 2 PHI 2 216 216 PHI PHI T . n J 1 3 GLY 3 217 217 GLY GLY T . n J 1 4 GLY 4 218 218 GLY GLY T . n J 1 5 ASN 5 219 219 ASN ASN T . n J 1 6 ASP 6 220 220 ASP ASP T . n J 1 7 ASN 7 221 221 ASN ASN T . n J 1 8 PHE 8 222 222 PHE PHE T . n J 1 9 GLY 9 223 223 GLY GLY T . n K 1 1 GLY 1 215 215 GLY GLY W . n K 1 2 PHI 2 216 216 PHI PHI W . n K 1 3 GLY 3 217 217 GLY GLY W . n K 1 4 GLY 4 218 218 GLY GLY W . n K 1 5 ASN 5 219 219 ASN ASN W . n K 1 6 ASP 6 220 220 ASP ASP W . n K 1 7 ASN 7 221 221 ASN ASN W . n K 1 8 PHE 8 222 222 PHE PHE W . n K 1 9 GLY 9 223 223 GLY GLY W . n L 1 1 GLY 1 215 215 GLY GLY X . n L 1 2 PHI 2 216 216 PHI PHI X . n L 1 3 GLY 3 217 217 GLY GLY X . n L 1 4 GLY 4 218 218 GLY GLY X . n L 1 5 ASN 5 219 219 ASN ASN X . n L 1 6 ASP 6 220 220 ASP ASP X . n L 1 7 ASN 7 221 221 ASN ASN X . n L 1 8 PHE 8 222 222 PHE PHE X . n L 1 9 GLY 9 223 223 GLY GLY X . n M 1 1 GLY 1 215 215 GLY GLY Z . n M 1 2 PHI 2 216 216 PHI PHI Z . n M 1 3 GLY 3 217 217 GLY GLY Z . n M 1 4 GLY 4 218 218 GLY GLY Z . n M 1 5 ASN 5 219 219 ASN ASN Z . n M 1 6 ASP 6 220 220 ASP ASP Z . n M 1 7 ASN 7 221 221 ASN ASN Z . n M 1 8 PHE 8 222 222 PHE PHE Z . n M 1 9 GLY 9 223 223 GLY GLY Z . n N 1 1 GLY 1 215 215 GLY GLY a . n N 1 2 PHI 2 216 216 PHI PHI a . n N 1 3 GLY 3 217 217 GLY GLY a . n N 1 4 GLY 4 218 218 GLY GLY a . n N 1 5 ASN 5 219 219 ASN ASN a . n N 1 6 ASP 6 220 220 ASP ASP a . n N 1 7 ASN 7 221 221 ASN ASN a . n N 1 8 PHE 8 222 222 PHE PHE a . n N 1 9 GLY 9 223 223 GLY GLY a . n O 1 1 GLY 1 215 215 GLY GLY c . n O 1 2 PHI 2 216 216 PHI PHI c . n O 1 3 GLY 3 217 217 GLY GLY c . n O 1 4 GLY 4 218 218 GLY GLY c . n O 1 5 ASN 5 219 219 ASN ASN c . n O 1 6 ASP 6 220 220 ASP ASP c . n O 1 7 ASN 7 221 221 ASN ASN c . n O 1 8 PHE 8 222 222 PHE PHE c . n O 1 9 GLY 9 223 223 GLY GLY c . n P 1 1 GLY 1 215 215 GLY GLY d . n P 1 2 PHI 2 216 216 PHI PHI d . n P 1 3 GLY 3 217 217 GLY GLY d . n P 1 4 GLY 4 218 218 GLY GLY d . n P 1 5 ASN 5 219 219 ASN ASN d . n P 1 6 ASP 6 220 220 ASP ASP d . n P 1 7 ASN 7 221 221 ASN ASN d . n P 1 8 PHE 8 222 222 PHE PHE d . n P 1 9 GLY 9 223 223 GLY GLY d . n Q 1 1 GLY 1 215 215 GLY GLY e . n Q 1 2 PHI 2 216 216 PHI PHI e . n Q 1 3 GLY 3 217 217 GLY GLY e . n Q 1 4 GLY 4 218 218 GLY GLY e . n Q 1 5 ASN 5 219 219 ASN ASN e . n Q 1 6 ASP 6 220 220 ASP ASP e . n Q 1 7 ASN 7 221 221 ASN ASN e . n Q 1 8 PHE 8 222 222 PHE PHE e . n Q 1 9 GLY 9 223 223 GLY GLY e . n R 1 1 GLY 1 215 215 GLY GLY i . n R 1 2 PHI 2 216 216 PHI PHI i . n R 1 3 GLY 3 217 217 GLY GLY i . n R 1 4 GLY 4 218 218 GLY GLY i . n R 1 5 ASN 5 219 219 ASN ASN i . n R 1 6 ASP 6 220 220 ASP ASP i . n R 1 7 ASN 7 221 221 ASN ASN i . n R 1 8 PHE 8 222 222 PHE PHE i . n R 1 9 GLY 9 223 223 GLY GLY i . n S 1 1 GLY 1 215 215 GLY GLY j . n S 1 2 PHI 2 216 216 PHI PHI j . n S 1 3 GLY 3 217 217 GLY GLY j . n S 1 4 GLY 4 218 218 GLY GLY j . n S 1 5 ASN 5 219 219 ASN ASN j . n S 1 6 ASP 6 220 220 ASP ASP j . n S 1 7 ASN 7 221 221 ASN ASN j . n S 1 8 PHE 8 222 222 PHE PHE j . n S 1 9 GLY 9 223 223 GLY GLY j . n T 1 1 GLY 1 215 215 GLY GLY m . n T 1 2 PHI 2 216 216 PHI PHI m . n T 1 3 GLY 3 217 217 GLY GLY m . n T 1 4 GLY 4 218 218 GLY GLY m . n T 1 5 ASN 5 219 219 ASN ASN m . n T 1 6 ASP 6 220 220 ASP ASP m . n T 1 7 ASN 7 221 221 ASN ASN m . n T 1 8 PHE 8 222 222 PHE PHE m . n T 1 9 GLY 9 223 223 GLY GLY m . n U 1 1 GLY 1 215 215 GLY GLY p . n U 1 2 PHI 2 216 216 PHI PHI p . n U 1 3 GLY 3 217 217 GLY GLY p . n U 1 4 GLY 4 218 218 GLY GLY p . n U 1 5 ASN 5 219 219 ASN ASN p . n U 1 6 ASP 6 220 220 ASP ASP p . n U 1 7 ASN 7 221 221 ASN ASN p . n U 1 8 PHE 8 222 222 PHE PHE p . n U 1 9 GLY 9 223 223 GLY GLY p . n V 1 1 GLY 1 215 215 GLY GLY q . n V 1 2 PHI 2 216 216 PHI PHI q . n V 1 3 GLY 3 217 217 GLY GLY q . n V 1 4 GLY 4 218 218 GLY GLY q . n V 1 5 ASN 5 219 219 ASN ASN q . n V 1 6 ASP 6 220 220 ASP ASP q . n V 1 7 ASN 7 221 221 ASN ASN q . n V 1 8 PHE 8 222 222 PHE PHE q . n V 1 9 GLY 9 223 223 GLY GLY q . n W 1 1 GLY 1 215 215 GLY GLY s . n W 1 2 PHI 2 216 216 PHI PHI s . n W 1 3 GLY 3 217 217 GLY GLY s . n W 1 4 GLY 4 218 218 GLY GLY s . n W 1 5 ASN 5 219 219 ASN ASN s . n W 1 6 ASP 6 220 220 ASP ASP s . n W 1 7 ASN 7 221 221 ASN ASN s . n W 1 8 PHE 8 222 222 PHE PHE s . n W 1 9 GLY 9 223 223 GLY GLY s . n X 1 1 GLY 1 215 215 GLY GLY t . n X 1 2 PHI 2 216 216 PHI PHI t . n X 1 3 GLY 3 217 217 GLY GLY t . n X 1 4 GLY 4 218 218 GLY GLY t . n X 1 5 ASN 5 219 219 ASN ASN t . n X 1 6 ASP 6 220 220 ASP ASP t . n X 1 7 ASN 7 221 221 ASN ASN t . n X 1 8 PHE 8 222 222 PHE PHE t . n X 1 9 GLY 9 223 223 GLY GLY t . n Y 1 1 GLY 1 215 215 GLY GLY w . n Y 1 2 PHI 2 216 216 PHI PHI w . n Y 1 3 GLY 3 217 217 GLY GLY w . n Y 1 4 GLY 4 218 218 GLY GLY w . n Y 1 5 ASN 5 219 219 ASN ASN w . n Y 1 6 ASP 6 220 220 ASP ASP w . n Y 1 7 ASN 7 221 221 ASN ASN w . n Y 1 8 PHE 8 222 222 PHE PHE w . n Y 1 9 GLY 9 223 223 GLY GLY w . n Z 1 1 GLY 1 215 215 GLY GLY x . n Z 1 2 PHI 2 216 216 PHI PHI x . n Z 1 3 GLY 3 217 217 GLY GLY x . n Z 1 4 GLY 4 218 218 GLY GLY x . n Z 1 5 ASN 5 219 219 ASN ASN x . n Z 1 6 ASP 6 220 220 ASP ASP x . n Z 1 7 ASN 7 221 221 ASN ASN x . n Z 1 8 PHE 8 222 222 PHE PHE x . n Z 1 9 GLY 9 223 223 GLY GLY x . n AA 1 1 GLY 1 215 215 GLY GLY 0 . n AA 1 2 PHI 2 216 216 PHI PHI 0 . n AA 1 3 GLY 3 217 217 GLY GLY 0 . n AA 1 4 GLY 4 218 218 GLY GLY 0 . n AA 1 5 ASN 5 219 219 ASN ASN 0 . n AA 1 6 ASP 6 220 220 ASP ASP 0 . n AA 1 7 ASN 7 221 221 ASN ASN 0 . n AA 1 8 PHE 8 222 222 PHE PHE 0 . n AA 1 9 GLY 9 223 223 GLY GLY 0 . n BA 1 1 GLY 1 215 215 GLY GLY 3 . n BA 1 2 PHI 2 216 216 PHI PHI 3 . n BA 1 3 GLY 3 217 217 GLY GLY 3 . n BA 1 4 GLY 4 218 218 GLY GLY 3 . n BA 1 5 ASN 5 219 219 ASN ASN 3 . n BA 1 6 ASP 6 220 220 ASP ASP 3 . n BA 1 7 ASN 7 221 221 ASN ASN 3 . n BA 1 8 PHE 8 222 222 PHE PHE 3 . n BA 1 9 GLY 9 223 223 GLY GLY 3 . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8IKB _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8IKB _struct.title 'Cryo-EM structure of hnRAC1-2I fibril.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8IKB _struct_keywords.text 'reversible fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8IKB _struct_ref.pdbx_db_accession 8IKB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8IKB D 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 2 1 8IKB E 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 3 1 8IKB F 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 4 1 8IKB I 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 5 1 8IKB J 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 6 1 8IKB L 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 7 1 8IKB M 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 8 1 8IKB P 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 9 1 8IKB S 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 10 1 8IKB T 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 11 1 8IKB W 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 12 1 8IKB X 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 13 1 8IKB Z 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 14 1 8IKB a 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 15 1 8IKB c 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 16 1 8IKB d 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 17 1 8IKB e 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 18 1 8IKB i 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 19 1 8IKB j 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 20 1 8IKB m 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 21 1 8IKB p 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 22 1 8IKB q 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 23 1 8IKB s 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 24 1 8IKB t 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 25 1 8IKB w 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 26 1 8IKB x 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 27 1 8IKB 0 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 28 1 8IKB 3 1 ? 9 ? 8IKB 215 ? 223 ? 215 223 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A PHI 2 N ? ? D GLY 215 D PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A PHI 2 C ? ? ? 1_555 A GLY 3 N ? ? D PHI 216 D GLY 217 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? B GLY 1 C ? ? ? 1_555 B PHI 2 N ? ? E GLY 215 E PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? B PHI 2 C ? ? ? 1_555 B GLY 3 N ? ? E PHI 216 E GLY 217 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? C GLY 1 C ? ? ? 1_555 C PHI 2 N ? ? F GLY 215 F PHI 216 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? C PHI 2 C ? ? ? 1_555 C GLY 3 N ? ? F PHI 216 F GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? D GLY 1 C ? ? ? 1_555 D PHI 2 N ? ? I GLY 215 I PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? D PHI 2 C ? ? ? 1_555 D GLY 3 N ? ? I PHI 216 I GLY 217 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? E GLY 1 C ? ? ? 1_555 E PHI 2 N ? ? J GLY 215 J PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? E PHI 2 C ? ? ? 1_555 E GLY 3 N ? ? J PHI 216 J GLY 217 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? F GLY 1 C ? ? ? 1_555 F PHI 2 N ? ? L GLY 215 L PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? F PHI 2 C ? ? ? 1_555 F GLY 3 N ? ? L PHI 216 L GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? G GLY 1 C ? ? ? 1_555 G PHI 2 N ? ? M GLY 215 M PHI 216 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? G PHI 2 C ? ? ? 1_555 G GLY 3 N ? ? M PHI 216 M GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? H GLY 1 C ? ? ? 1_555 H PHI 2 N ? ? P GLY 215 P PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? H PHI 2 C ? ? ? 1_555 H GLY 3 N ? ? P PHI 216 P GLY 217 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? I GLY 1 C ? ? ? 1_555 I PHI 2 N ? ? S GLY 215 S PHI 216 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale18 covale both ? I PHI 2 C ? ? ? 1_555 I GLY 3 N ? ? S PHI 216 S GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? J GLY 1 C ? ? ? 1_555 J PHI 2 N ? ? T GLY 215 T PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? J PHI 2 C ? ? ? 1_555 J GLY 3 N ? ? T PHI 216 T GLY 217 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale21 covale both ? K GLY 1 C ? ? ? 1_555 K PHI 2 N ? ? W GLY 215 W PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale22 covale both ? K PHI 2 C ? ? ? 1_555 K GLY 3 N ? ? W PHI 216 W GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? L GLY 1 C ? ? ? 1_555 L PHI 2 N ? ? X GLY 215 X PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale24 covale both ? L PHI 2 C ? ? ? 1_555 L GLY 3 N ? ? X PHI 216 X GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale25 covale both ? M GLY 1 C ? ? ? 1_555 M PHI 2 N ? ? Z GLY 215 Z PHI 216 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale26 covale both ? M PHI 2 C ? ? ? 1_555 M GLY 3 N ? ? Z PHI 216 Z GLY 217 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale27 covale both ? N GLY 1 C ? ? ? 1_555 N PHI 2 N ? ? a GLY 215 a PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale28 covale both ? N PHI 2 C ? ? ? 1_555 N GLY 3 N ? ? a PHI 216 a GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale29 covale both ? O GLY 1 C ? ? ? 1_555 O PHI 2 N ? ? c GLY 215 c PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? O PHI 2 C ? ? ? 1_555 O GLY 3 N ? ? c PHI 216 c GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale31 covale both ? P GLY 1 C ? ? ? 1_555 P PHI 2 N ? ? d GLY 215 d PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale32 covale both ? P PHI 2 C ? ? ? 1_555 P GLY 3 N ? ? d PHI 216 d GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale33 covale both ? Q GLY 1 C ? ? ? 1_555 Q PHI 2 N ? ? e GLY 215 e PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale34 covale both ? Q PHI 2 C ? ? ? 1_555 Q GLY 3 N ? ? e PHI 216 e GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale35 covale both ? R GLY 1 C ? ? ? 1_555 R PHI 2 N ? ? i GLY 215 i PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale36 covale both ? R PHI 2 C ? ? ? 1_555 R GLY 3 N ? ? i PHI 216 i GLY 217 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale37 covale both ? S GLY 1 C ? ? ? 1_555 S PHI 2 N ? ? j GLY 215 j PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale38 covale both ? S PHI 2 C ? ? ? 1_555 S GLY 3 N ? ? j PHI 216 j GLY 217 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale39 covale both ? T GLY 1 C ? ? ? 1_555 T PHI 2 N ? ? m GLY 215 m PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale40 covale both ? T PHI 2 C ? ? ? 1_555 T GLY 3 N ? ? m PHI 216 m GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale41 covale both ? U GLY 1 C ? ? ? 1_555 U PHI 2 N ? ? p GLY 215 p PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale42 covale both ? U PHI 2 C ? ? ? 1_555 U GLY 3 N ? ? p PHI 216 p GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale43 covale both ? V GLY 1 C ? ? ? 1_555 V PHI 2 N ? ? q GLY 215 q PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale44 covale both ? V PHI 2 C ? ? ? 1_555 V GLY 3 N ? ? q PHI 216 q GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale45 covale both ? W GLY 1 C ? ? ? 1_555 W PHI 2 N ? ? s GLY 215 s PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale46 covale both ? W PHI 2 C ? ? ? 1_555 W GLY 3 N ? ? s PHI 216 s GLY 217 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale47 covale both ? X GLY 1 C ? ? ? 1_555 X PHI 2 N ? ? t GLY 215 t PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale48 covale both ? X PHI 2 C ? ? ? 1_555 X GLY 3 N ? ? t PHI 216 t GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale49 covale both ? Y GLY 1 C ? ? ? 1_555 Y PHI 2 N ? ? w GLY 215 w PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale50 covale both ? Y PHI 2 C ? ? ? 1_555 Y GLY 3 N ? ? w PHI 216 w GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale51 covale both ? Z GLY 1 C ? ? ? 1_555 Z PHI 2 N ? ? x GLY 215 x PHI 216 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale52 covale both ? Z PHI 2 C ? ? ? 1_555 Z GLY 3 N ? ? x PHI 216 x GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale53 covale both ? AA GLY 1 C ? ? ? 1_555 AA PHI 2 N ? ? 0 GLY 215 0 PHI 216 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale54 covale both ? AA PHI 2 C ? ? ? 1_555 AA GLY 3 N ? ? 0 PHI 216 0 GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale55 covale both ? BA GLY 1 C ? ? ? 1_555 BA PHI 2 N ? ? 3 GLY 215 3 PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale56 covale both ? BA PHI 2 C ? ? ? 1_555 BA GLY 3 N ? ? 3 PHI 216 3 GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C E GLY 223 ? ? OD2 F ASP 220 ? ? 1.98 2 1 O p ASP 220 ? ? CD2 p PHE 222 ? ? 2.00 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB D PHE 222 ? ? CA D PHE 222 ? ? C D PHE 222 ? ? 129.28 110.40 18.88 2.00 N 2 1 N E GLY 217 ? ? CA E GLY 217 ? ? C E GLY 217 ? ? 84.99 113.10 -28.11 2.50 N 3 1 N F GLY 217 ? ? CA F GLY 217 ? ? C F GLY 217 ? ? 86.90 113.10 -26.20 2.50 N 4 1 N F GLY 218 ? ? CA F GLY 218 ? ? C F GLY 218 ? ? 93.72 113.10 -19.38 2.50 N 5 1 N F ASN 219 ? ? CA F ASN 219 ? ? CB F ASN 219 ? ? 99.79 110.60 -10.81 1.80 N 6 1 N F ASN 221 ? ? CA F ASN 221 ? ? C F ASN 221 ? ? 130.16 111.00 19.16 2.70 N 7 1 N F PHE 222 ? ? CA F PHE 222 ? ? CB F PHE 222 ? ? 125.65 110.60 15.05 1.80 N 8 1 CB I ASN 219 ? ? CA I ASN 219 ? ? C I ASN 219 ? ? 92.09 110.40 -18.31 2.00 N 9 1 N I ASP 220 ? ? CA I ASP 220 ? ? C I ASP 220 ? ? 92.55 111.00 -18.45 2.70 N 10 1 N I ASN 221 ? ? CA I ASN 221 ? ? CB I ASN 221 ? ? 122.96 110.60 12.36 1.80 N 11 1 N I ASN 221 ? ? CA I ASN 221 ? ? C I ASN 221 ? ? 91.52 111.00 -19.48 2.70 N 12 1 N L ASN 219 ? ? CA L ASN 219 ? ? C L ASN 219 ? ? 87.61 111.00 -23.39 2.70 N 13 1 N L ASP 220 ? ? CA L ASP 220 ? ? C L ASP 220 ? ? 93.78 111.00 -17.22 2.70 N 14 1 N M ASP 220 ? ? CA M ASP 220 ? ? C M ASP 220 ? ? 129.39 111.00 18.39 2.70 N 15 1 CB M ASN 221 ? ? CA M ASN 221 ? ? C M ASN 221 ? ? 124.21 110.40 13.81 2.00 N 16 1 N M PHE 222 ? ? CA M PHE 222 ? ? C M PHE 222 ? ? 94.67 111.00 -16.33 2.70 N 17 1 N P ASN 219 ? ? CA P ASN 219 ? ? C P ASN 219 ? ? 93.75 111.00 -17.25 2.70 N 18 1 CB P ASP 220 ? ? CA P ASP 220 ? ? C P ASP 220 ? ? 90.38 110.40 -20.02 2.00 N 19 1 N P ASN 221 ? ? CA P ASN 221 ? ? CB P ASN 221 ? ? 97.64 110.60 -12.96 1.80 N 20 1 N P ASN 221 ? ? CA P ASN 221 ? ? C P ASN 221 ? ? 129.26 111.00 18.26 2.70 N 21 1 N T GLY 217 ? ? CA T GLY 217 ? ? C T GLY 217 ? ? 91.56 113.10 -21.54 2.50 N 22 1 N W GLY 218 ? ? CA W GLY 218 ? ? C W GLY 218 ? ? 142.71 113.10 29.61 2.50 N 23 1 N W ASN 219 ? ? CA W ASN 219 ? ? C W ASN 219 ? ? 83.65 111.00 -27.35 2.70 N 24 1 N W ASP 220 ? ? CA W ASP 220 ? ? C W ASP 220 ? ? 87.31 111.00 -23.69 2.70 N 25 1 N W ASN 221 ? ? CA W ASN 221 ? ? CB W ASN 221 ? ? 122.00 110.60 11.40 1.80 N 26 1 N W ASN 221 ? ? CA W ASN 221 ? ? C W ASN 221 ? ? 92.47 111.00 -18.53 2.70 N 27 1 CB W PHE 222 ? ? CA W PHE 222 ? ? C W PHE 222 ? ? 127.43 110.40 17.03 2.00 N 28 1 N Z GLY 217 ? ? CA Z GLY 217 ? ? C Z GLY 217 ? ? 94.63 113.10 -18.47 2.50 N 29 1 CB a ASP 220 ? ? CA a ASP 220 ? ? C a ASP 220 ? ? 91.20 110.40 -19.20 2.00 N 30 1 N a ASN 221 ? ? CA a ASN 221 ? ? CB a ASN 221 ? ? 91.58 110.60 -19.02 1.80 N 31 1 N c GLY 217 ? ? CA c GLY 217 ? ? C c GLY 217 ? ? 86.45 113.10 -26.65 2.50 N 32 1 CB c ASP 220 ? ? CA c ASP 220 ? ? C c ASP 220 ? ? 126.24 110.40 15.84 2.00 N 33 1 N d GLY 218 ? ? CA d GLY 218 ? ? C d GLY 218 ? ? 129.32 113.10 16.22 2.50 N 34 1 N d ASN 219 ? ? CA d ASN 219 ? ? CB d ASN 219 ? ? 123.25 110.60 12.65 1.80 N 35 1 CB d ASP 220 ? ? CA d ASP 220 ? ? C d ASP 220 ? ? 123.98 110.40 13.58 2.00 N 36 1 N d ASN 221 ? ? CA d ASN 221 ? ? C d ASN 221 ? ? 90.18 111.00 -20.82 2.70 N 37 1 CB d PHE 222 ? ? CA d PHE 222 ? ? C d PHE 222 ? ? 124.06 110.40 13.66 2.00 N 38 1 N e GLY 217 ? ? CA e GLY 217 ? ? C e GLY 217 ? ? 95.97 113.10 -17.13 2.50 N 39 1 N e GLY 218 ? ? CA e GLY 218 ? ? C e GLY 218 ? ? 96.92 113.10 -16.18 2.50 N 40 1 N e ASN 221 ? ? CA e ASN 221 ? ? C e ASN 221 ? ? 94.59 111.00 -16.41 2.70 N 41 1 N e PHE 222 ? ? CA e PHE 222 ? ? C e PHE 222 ? ? 93.47 111.00 -17.53 2.70 N 42 1 N i GLY 217 ? ? CA i GLY 217 ? ? C i GLY 217 ? ? 92.55 113.10 -20.55 2.50 N 43 1 CB i PHE 222 ? ? CA i PHE 222 ? ? C i PHE 222 ? ? 127.74 110.40 17.34 2.00 N 44 1 N i GLY 223 ? ? CA i GLY 223 ? ? C i GLY 223 ? ? 129.54 113.10 16.44 2.50 N 45 1 CB j ASN 219 ? ? CA j ASN 219 ? ? C j ASN 219 ? ? 125.32 110.40 14.92 2.00 N 46 1 N j ASN 219 ? ? CA j ASN 219 ? ? CB j ASN 219 ? ? 99.15 110.60 -11.45 1.80 N 47 1 N j ASN 219 ? ? CA j ASN 219 ? ? C j ASN 219 ? ? 94.64 111.00 -16.36 2.70 N 48 1 N j ASP 220 ? ? CA j ASP 220 ? ? CB j ASP 220 ? ? 97.57 110.60 -13.03 1.80 N 49 1 CB j PHE 222 ? ? CA j PHE 222 ? ? C j PHE 222 ? ? 131.95 110.40 21.55 2.00 N 50 1 N j PHE 222 ? ? CA j PHE 222 ? ? C j PHE 222 ? ? 88.44 111.00 -22.56 2.70 N 51 1 N p GLY 217 ? ? CA p GLY 217 ? ? C p GLY 217 ? ? 95.96 113.10 -17.14 2.50 N 52 1 CB p ASN 221 ? ? CA p ASN 221 ? ? C p ASN 221 ? ? 126.61 110.40 16.21 2.00 N 53 1 N p ASN 221 ? ? CA p ASN 221 ? ? C p ASN 221 ? ? 90.34 111.00 -20.66 2.70 N 54 1 N q GLY 217 ? ? CA q GLY 217 ? ? C q GLY 217 ? ? 156.30 113.10 43.20 2.50 N 55 1 N q GLY 218 ? ? CA q GLY 218 ? ? C q GLY 218 ? ? 135.05 113.10 21.95 2.50 N 56 1 N q ASP 220 ? ? CA q ASP 220 ? ? CB q ASP 220 ? ? 93.18 110.60 -17.42 1.80 N 57 1 N q ASP 220 ? ? CA q ASP 220 ? ? C q ASP 220 ? ? 133.64 111.00 22.64 2.70 N 58 1 N q PHE 222 ? ? CA q PHE 222 ? ? C q PHE 222 ? ? 87.52 111.00 -23.48 2.70 N 59 1 N s GLY 218 ? ? CA s GLY 218 ? ? C s GLY 218 ? ? 93.54 113.10 -19.56 2.50 N 60 1 N s PHE 222 ? ? CA s PHE 222 ? ? C s PHE 222 ? ? 87.35 111.00 -23.65 2.70 N 61 1 N t GLY 217 ? ? CA t GLY 217 ? ? C t GLY 217 ? ? 98.01 113.10 -15.09 2.50 N 62 1 CB t PHE 222 ? ? CA t PHE 222 ? ? C t PHE 222 ? ? 122.92 110.40 12.52 2.00 N 63 1 CB w PHE 222 ? ? CA w PHE 222 ? ? C w PHE 222 ? ? 127.63 110.40 17.23 2.00 N 64 1 N x ASN 219 ? ? CA x ASN 219 ? ? CB x ASN 219 ? ? 94.39 110.60 -16.21 1.80 N 65 1 CB 0 ASP 220 ? ? CA 0 ASP 220 ? ? C 0 ASP 220 ? ? 98.02 110.40 -12.38 2.00 N 66 1 N 0 ASN 221 ? ? CA 0 ASN 221 ? ? C 0 ASN 221 ? ? 87.99 111.00 -23.01 2.70 N 67 1 N 0 PHE 222 ? ? CA 0 PHE 222 ? ? CB 0 PHE 222 ? ? 123.73 110.60 13.13 1.80 N 68 1 N 3 GLY 217 ? ? CA 3 GLY 217 ? ? C 3 GLY 217 ? ? 143.32 113.10 30.22 2.50 N 69 1 N 3 GLY 218 ? ? CA 3 GLY 218 ? ? C 3 GLY 218 ? ? 134.40 113.10 21.30 2.50 N 70 1 CB 3 ASP 220 ? ? CA 3 ASP 220 ? ? C 3 ASP 220 ? ? 124.09 110.40 13.69 2.00 N 71 1 N 3 PHE 222 ? ? CA 3 PHE 222 ? ? C 3 PHE 222 ? ? 88.32 111.00 -22.68 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHI F 216 ? ? -39.78 120.48 2 1 PHI L 216 ? ? 40.50 -125.92 3 1 PHI M 216 ? ? 46.05 -117.14 4 1 PHI W 216 ? ? 44.76 -126.04 5 1 PHE Z 222 ? ? -162.40 -167.57 6 1 PHI s 216 ? ? -37.49 123.96 # _pdbx_entry_details.entry_id 8IKB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8IKB _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8IKB _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.71 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 6826 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Cryo-EM structure of hnRAC1-2I fibril.' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8IKB _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8IKB _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8IKB _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 PHE N N N N 44 PHE CA C N S 45 PHE C C N N 46 PHE O O N N 47 PHE CB C N N 48 PHE CG C Y N 49 PHE CD1 C Y N 50 PHE CD2 C Y N 51 PHE CE1 C Y N 52 PHE CE2 C Y N 53 PHE CZ C Y N 54 PHE OXT O N N 55 PHE H H N N 56 PHE H2 H N N 57 PHE HA H N N 58 PHE HB2 H N N 59 PHE HB3 H N N 60 PHE HD1 H N N 61 PHE HD2 H N N 62 PHE HE1 H N N 63 PHE HE2 H N N 64 PHE HZ H N N 65 PHE HXT H N N 66 PHI N N N N 67 PHI CA C N S 68 PHI CB C N N 69 PHI CG C Y N 70 PHI CD1 C Y N 71 PHI CD2 C Y N 72 PHI CE1 C Y N 73 PHI CE2 C Y N 74 PHI CZ C Y N 75 PHI I I N N 76 PHI C C N N 77 PHI O O N N 78 PHI OXT O N N 79 PHI H H N N 80 PHI H2 H N N 81 PHI HA H N N 82 PHI HB2 H N N 83 PHI HB3 H N N 84 PHI HD1 H N N 85 PHI HD2 H N N 86 PHI HE1 H N N 87 PHI HE2 H N N 88 PHI HXT H N N 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 PHE N CA sing N N 41 PHE N H sing N N 42 PHE N H2 sing N N 43 PHE CA C sing N N 44 PHE CA CB sing N N 45 PHE CA HA sing N N 46 PHE C O doub N N 47 PHE C OXT sing N N 48 PHE CB CG sing N N 49 PHE CB HB2 sing N N 50 PHE CB HB3 sing N N 51 PHE CG CD1 doub Y N 52 PHE CG CD2 sing Y N 53 PHE CD1 CE1 sing Y N 54 PHE CD1 HD1 sing N N 55 PHE CD2 CE2 doub Y N 56 PHE CD2 HD2 sing N N 57 PHE CE1 CZ doub Y N 58 PHE CE1 HE1 sing N N 59 PHE CE2 CZ sing Y N 60 PHE CE2 HE2 sing N N 61 PHE CZ HZ sing N N 62 PHE OXT HXT sing N N 63 PHI N CA sing N N 64 PHI N H sing N N 65 PHI N H2 sing N N 66 PHI CA CB sing N N 67 PHI CA C sing N N 68 PHI CA HA sing N N 69 PHI CB CG sing N N 70 PHI CB HB2 sing N N 71 PHI CB HB3 sing N N 72 PHI CG CD1 doub Y N 73 PHI CG CD2 sing Y N 74 PHI CD1 CE1 sing Y N 75 PHI CD1 HD1 sing N N 76 PHI CD2 CE2 doub Y N 77 PHI CD2 HD2 sing N N 78 PHI CE1 CZ doub Y N 79 PHI CE1 HE1 sing N N 80 PHI CE2 CZ sing Y N 81 PHI CE2 HE2 sing N N 82 PHI CZ I sing N N 83 PHI C O doub N N 84 PHI C OXT sing N N 85 PHI OXT HXT sing N N 86 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.55 _em_helical_entity.axial_rise_per_subunit 2.40 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PHI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PHI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8IKB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C I N O # loop_