HEADER FLAVOPROTEIN 03-MAR-23 8IL9 TITLE CRYSTAL STRUCTURE OF THE LOV1 Q122N MUTANT OF KLEBSORMIDIUM NITENS TITLE 2 PHOTOTROPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOTROPIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSORMIDIUM NITENS; SOURCE 3 ORGANISM_TAXID: 105231; SOURCE 4 GENE: KFL_000480260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BLUE LIGHT PHOTORECEPTOR, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.GAUTAM,S.SHARMA,S.GOURINATH,S.KATERIYA REVDAT 1 06-MAR-24 8IL9 0 JRNL AUTH A.K.GAUTAM,S.SHARMA,S.GOURINATH,S.KATERIA JRNL TITL CRYSTAL STRUCTURE OF LOV1 Q122N MUTANT OF PHOTOTROPIN FROM JRNL TITL 2 KLEBSORMIDIUM NITENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 10780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.372 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41600 REMARK 3 B22 (A**2) : 0.41600 REMARK 3 B33 (A**2) : -0.83100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.162 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 953 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 877 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1294 ; 1.684 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2019 ; 0.561 ; 1.565 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 118 ; 7.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 5 ; 9.226 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 151 ;16.296 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 140 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1115 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 213 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 186 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 65 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 481 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.024 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 472 ; 4.877 ; 4.952 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 472 ; 4.811 ; 4.956 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 590 ; 6.422 ; 8.849 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 591 ; 6.422 ; 8.863 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 481 ; 6.449 ; 5.354 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 478 ; 6.448 ; 5.355 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 704 ; 9.498 ; 9.607 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 705 ; 9.491 ; 9.602 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8IL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918402 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.156 REMARK 200 RESOLUTION RANGE LOW (A) : 38.098 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 24.40 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NICKEL CHLORIDE HEXAHYDRATE, TRIS PH REMARK 280 8.5, LITHIUM SULFATE MONOHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.70300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.93900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.93900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.05450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.93900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.93900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.35150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.93900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.93900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.05450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.93900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.93900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.35150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.70300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 137.40600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 ASP A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 PHE A 21 REMARK 465 LYS A 22 REMARK 465 ASN A 140 REMARK 465 GLY A 141 REMARK 465 LEU A 142 REMARK 465 SER A 143 REMARK 465 THR A 144 REMARK 465 SER A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 23 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 32 CE NZ REMARK 470 GLN A 127 CD OE1 NE2 REMARK 470 LYS A 135 CD CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 122 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 -3.92 73.07 REMARK 500 VAL A 54 -53.15 -127.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 76 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 402 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 403 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 404 DISTANCE = 8.98 ANGSTROMS DBREF1 8IL9 A 15 146 UNP A0A1Y1HNG4_KLENI DBREF2 8IL9 A A0A1Y1HNG4 48 179 SEQADV 8IL9 MET A 1 UNP A0A1Y1HNG INITIATING METHIONINE SEQADV 8IL9 ALA A 2 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 SER A 3 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 MET A 4 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 THR A 5 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLY A 6 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLY A 7 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLN A 8 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLN A 9 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 MET A 10 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLY A 11 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 ARG A 12 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 GLY A 13 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 SER A 14 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 ASN A 122 UNP A0A1Y1HNG GLN 155 ENGINEERED MUTATION SEQADV 8IL9 GLU A 147 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 148 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 149 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 150 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 151 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 152 UNP A0A1Y1HNG EXPRESSION TAG SEQADV 8IL9 HIS A 153 UNP A0A1Y1HNG EXPRESSION TAG SEQRES 1 A 153 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 153 SER LYS ASP ALA LEU SER THR PHE LYS HIS THR PHE VAL SEQRES 3 A 153 VAL ALA ASP ALA THR LYS ASP MET ALA ILE MET TYR ALA SEQRES 4 A 153 SER ALA GLY PHE TYR GLU MET THR GLN TYR GLY PRO GLU SEQRES 5 A 153 ASP VAL ILE GLY LYS ASN CYS ARG PHE LEU GLN GLY PRO SEQRES 6 A 153 GLY THR ASP THR GLU GLU VAL ALA ARG ILE ARG ARG ALA SEQRES 7 A 153 ILE LYS ASN GLY GLU SER HIS CYS GLY ARG LEU LEU ASN SEQRES 8 A 153 TYR LYS LYS ASP GLY THR PRO PHE TRP ASN LEU LEU THR SEQRES 9 A 153 LEU ALA PRO ILE LYS ASN GLU GLN GLY ALA VAL VAL LYS SEQRES 10 A 153 PHE ILE GLY MET ASN VAL GLU VAL THR GLN PHE THR GLU SEQRES 11 A 153 GLY GLU LEU GLU LYS ALA MET ARG PRO ASN GLY LEU SER SEQRES 12 A 153 THR SER LEU GLU HIS HIS HIS HIS HIS HIS HET FMN A 201 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 THR A 31 ASP A 33 5 3 HELIX 2 AA2 SER A 40 GLN A 48 1 9 HELIX 3 AA3 GLY A 50 VAL A 54 5 5 HELIX 4 AA4 ASN A 58 GLN A 63 5 6 HELIX 5 AA5 ASP A 68 ASN A 81 1 14 HELIX 6 AA6 THR A 129 ARG A 138 1 10 SHEET 1 AA1 5 ILE A 36 ALA A 39 0 SHEET 2 AA1 5 PHE A 25 ASP A 29 -1 N VAL A 27 O MET A 37 SHEET 3 AA1 5 VAL A 115 GLU A 124 -1 O PHE A 118 N ALA A 28 SHEET 4 AA1 5 PRO A 98 LYS A 109 -1 N THR A 104 O MET A 121 SHEET 5 AA1 5 HIS A 85 TYR A 92 -1 N ASN A 91 O PHE A 99 SSBOND 1 CYS A 86 CYS A 86 1555 7556 2.26 CRYST1 53.878 53.878 137.406 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007278 0.00000