data_8ILD # _entry.id 8ILD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ILD pdb_00008ild 10.2210/pdb8ild/pdb WWPDB D_1300035797 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ILD _pdbx_database_status.recvd_initial_deposition_date 2023-03-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 4 huang@senaresearch.org Zhen Huang ? 'principal investigator/group leader' 0000-0002-8640-3227 5 ganjhh@fudan.edu.cn Jianhua Gan ? 'principal investigator/group leader' 0000-0002-8438-8852 6 hubei@scu.edu.cn Bei Hu ? 'principal investigator/group leader' 0000-0002-9925-0661 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Qin, T.' 1 0000-0001-6331-2851 'Chen, Y.Q.' 2 ? 'Gan, J.H.' 3 ? 'Huang, Z.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Insight into Polymerase Mechanism via a Chiral Center Generated with a Single Selenium Atom.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms242115758 _citation.pdbx_database_id_PubMed 37958741 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, T.' 1 ? primary 'Hu, B.' 2 0000-0002-9925-0661 primary 'Zhao, Q.' 3 ? primary 'Wang, Y.' 4 ? primary 'Wang, S.' 5 ? primary 'Luo, D.' 6 ? primary 'Lyu, J.' 7 ? primary 'Chen, Y.' 8 ? primary 'Gan, J.' 9 ? primary 'Huang, Z.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Repair DNA polymerase X' 20609.723 2 2.7.7.7 ? ? ? 2 polymer syn ;DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T)-3') ; 2715.799 2 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 6 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol X,AsfvPolX' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SGGGMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSF SVKVCGERKCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVPLKITTE KELIKELGFTYRIPKKRL ; ;SGGGMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSF SVKVCGERKCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVPLKITTE KELIKELGFTYRIPKKRL ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DG)(DA)(DT)(DC)(DC)(DT)' CAGGATCCT C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-TRIPHOSPHATE" GTP 4 'MANGANESE (II) ION' MN 5 'SULFATE ION' SO4 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 GLY n 1 4 GLY n 1 5 MET n 1 6 LEU n 1 7 THR n 1 8 LEU n 1 9 ILE n 1 10 GLN n 1 11 GLY n 1 12 LYS n 1 13 LYS n 1 14 ILE n 1 15 VAL n 1 16 ASN n 1 17 HIS n 1 18 LEU n 1 19 ARG n 1 20 SER n 1 21 ARG n 1 22 LEU n 1 23 ALA n 1 24 PHE n 1 25 GLU n 1 26 TYR n 1 27 ASN n 1 28 GLY n 1 29 GLN n 1 30 LEU n 1 31 ILE n 1 32 LYS n 1 33 ILE n 1 34 LEU n 1 35 SER n 1 36 LYS n 1 37 ASN n 1 38 ILE n 1 39 VAL n 1 40 ALA n 1 41 VAL n 1 42 GLY n 1 43 SER n 1 44 LEU n 1 45 ARG n 1 46 ARG n 1 47 GLU n 1 48 GLU n 1 49 LYS n 1 50 MET n 1 51 LEU n 1 52 ASN n 1 53 ASP n 1 54 VAL n 1 55 ASP n 1 56 LEU n 1 57 LEU n 1 58 ILE n 1 59 ILE n 1 60 VAL n 1 61 PRO n 1 62 GLU n 1 63 LYS n 1 64 LYS n 1 65 LEU n 1 66 LEU n 1 67 LYS n 1 68 HIS n 1 69 VAL n 1 70 LEU n 1 71 PRO n 1 72 ASN n 1 73 ILE n 1 74 ARG n 1 75 ILE n 1 76 LYS n 1 77 GLY n 1 78 LEU n 1 79 SER n 1 80 PHE n 1 81 SER n 1 82 VAL n 1 83 LYS n 1 84 VAL n 1 85 CYS n 1 86 GLY n 1 87 GLU n 1 88 ARG n 1 89 LYS n 1 90 CYS n 1 91 VAL n 1 92 LEU n 1 93 PHE n 1 94 ILE n 1 95 GLU n 1 96 TRP n 1 97 GLU n 1 98 LYS n 1 99 LYS n 1 100 THR n 1 101 TYR n 1 102 GLN n 1 103 LEU n 1 104 ASP n 1 105 LEU n 1 106 PHE n 1 107 THR n 1 108 ALA n 1 109 LEU n 1 110 ALA n 1 111 GLU n 1 112 GLU n 1 113 LYS n 1 114 PRO n 1 115 TYR n 1 116 ALA n 1 117 ILE n 1 118 PHE n 1 119 HIS n 1 120 PHE n 1 121 THR n 1 122 GLY n 1 123 PRO n 1 124 VAL n 1 125 SER n 1 126 TYR n 1 127 LEU n 1 128 ILE n 1 129 ARG n 1 130 ILE n 1 131 ARG n 1 132 ALA n 1 133 ALA n 1 134 LEU n 1 135 LYS n 1 136 LYS n 1 137 LYS n 1 138 ASN n 1 139 TYR n 1 140 LYS n 1 141 LEU n 1 142 ASN n 1 143 GLN n 1 144 TYR n 1 145 GLY n 1 146 LEU n 1 147 PHE n 1 148 LYS n 1 149 ASN n 1 150 GLN n 1 151 THR n 1 152 LEU n 1 153 VAL n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ILE n 1 158 THR n 1 159 THR n 1 160 GLU n 1 161 LYS n 1 162 GLU n 1 163 LEU n 1 164 ILE n 1 165 LYS n 1 166 GLU n 1 167 LEU n 1 168 GLY n 1 169 PHE n 1 170 THR n 1 171 TYR n 1 172 ARG n 1 173 ILE n 1 174 PRO n 1 175 LYS n 1 176 LYS n 1 177 ARG n 1 178 LEU n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 178 _entity_src_gen.gene_src_common_name 'Ba71V, ASFV' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Ba71V-97, O174L' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'African swine fever virus (strain Badajoz 1971 Vero-adapted)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10498 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -3 -3 SER SER A . n A 1 2 GLY 2 -2 -2 GLY GLY A . n A 1 3 GLY 3 -1 -1 GLY GLY A . n A 1 4 GLY 4 0 0 GLY GLY A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 LEU 6 2 2 LEU LEU A . n A 1 7 THR 7 3 3 THR THR A . n A 1 8 LEU 8 4 4 LEU LEU A . n A 1 9 ILE 9 5 5 ILE ILE A . n A 1 10 GLN 10 6 6 GLN GLN A . n A 1 11 GLY 11 7 7 GLY GLY A . n A 1 12 LYS 12 8 8 LYS LYS A . n A 1 13 LYS 13 9 9 LYS LYS A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 VAL 15 11 11 VAL VAL A . n A 1 16 ASN 16 12 12 ASN ASN A . n A 1 17 HIS 17 13 13 HIS HIS A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 ARG 19 15 15 ARG ARG A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 LEU 22 18 18 LEU LEU A . n A 1 23 ALA 23 19 19 ALA ALA A . n A 1 24 PHE 24 20 20 PHE PHE A . n A 1 25 GLU 25 21 21 GLU GLU A . n A 1 26 TYR 26 22 22 TYR TYR A . n A 1 27 ASN 27 23 23 ASN ASN A . n A 1 28 GLY 28 24 24 GLY GLY A . n A 1 29 GLN 29 25 25 GLN GLN A . n A 1 30 LEU 30 26 26 LEU LEU A . n A 1 31 ILE 31 27 27 ILE ILE A . n A 1 32 LYS 32 28 28 LYS LYS A . n A 1 33 ILE 33 29 29 ILE ILE A . n A 1 34 LEU 34 30 30 LEU LEU A . n A 1 35 SER 35 31 31 SER SER A . n A 1 36 LYS 36 32 32 LYS LYS A . n A 1 37 ASN 37 33 33 ASN ASN A . n A 1 38 ILE 38 34 34 ILE ILE A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ALA 40 36 36 ALA ALA A . n A 1 41 VAL 41 37 37 VAL VAL A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 SER 43 39 39 SER SER A . n A 1 44 LEU 44 40 40 LEU LEU A . n A 1 45 ARG 45 41 41 ARG ARG A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 GLU 47 43 43 GLU GLU A . n A 1 48 GLU 48 44 44 GLU GLU A . n A 1 49 LYS 49 45 45 LYS LYS A . n A 1 50 MET 50 46 46 MET MET A . n A 1 51 LEU 51 47 47 LEU LEU A . n A 1 52 ASN 52 48 48 ASN ASN A . n A 1 53 ASP 53 49 49 ASP ASP A . n A 1 54 VAL 54 50 50 VAL VAL A . n A 1 55 ASP 55 51 51 ASP ASP A . n A 1 56 LEU 56 52 52 LEU LEU A . n A 1 57 LEU 57 53 53 LEU LEU A . n A 1 58 ILE 58 54 54 ILE ILE A . n A 1 59 ILE 59 55 55 ILE ILE A . n A 1 60 VAL 60 56 56 VAL VAL A . n A 1 61 PRO 61 57 57 PRO PRO A . n A 1 62 GLU 62 58 58 GLU GLU A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 LYS 64 60 60 LYS LYS A . n A 1 65 LEU 65 61 61 LEU LEU A . n A 1 66 LEU 66 62 62 LEU LEU A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 HIS 68 64 64 HIS HIS A . n A 1 69 VAL 69 65 65 VAL VAL A . n A 1 70 LEU 70 66 66 LEU LEU A . n A 1 71 PRO 71 67 67 PRO PRO A . n A 1 72 ASN 72 68 68 ASN ASN A . n A 1 73 ILE 73 69 69 ILE ILE A . n A 1 74 ARG 74 70 70 ARG ARG A . n A 1 75 ILE 75 71 71 ILE ILE A . n A 1 76 LYS 76 72 72 LYS LYS A . n A 1 77 GLY 77 73 73 GLY GLY A . n A 1 78 LEU 78 74 74 LEU LEU A . n A 1 79 SER 79 75 75 SER SER A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 SER 81 77 77 SER SER A . n A 1 82 VAL 82 78 78 VAL VAL A . n A 1 83 LYS 83 79 79 LYS LYS A . n A 1 84 VAL 84 80 80 VAL VAL A . n A 1 85 CYS 85 81 81 CYS CYS A . n A 1 86 GLY 86 82 82 GLY GLY A . n A 1 87 GLU 87 83 83 GLU GLU A . n A 1 88 ARG 88 84 84 ARG ARG A . n A 1 89 LYS 89 85 85 LYS LYS A . n A 1 90 CYS 90 86 86 CYS CYS A . n A 1 91 VAL 91 87 87 VAL VAL A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 PHE 93 89 89 PHE PHE A . n A 1 94 ILE 94 90 90 ILE ILE A . n A 1 95 GLU 95 91 91 GLU GLU A . n A 1 96 TRP 96 92 92 TRP TRP A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 LYS 98 94 94 LYS LYS A . n A 1 99 LYS 99 95 95 LYS LYS A . n A 1 100 THR 100 96 96 THR THR A . n A 1 101 TYR 101 97 97 TYR TYR A . n A 1 102 GLN 102 98 98 GLN GLN A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 ASP 104 100 100 ASP ASP A . n A 1 105 LEU 105 101 101 LEU LEU A . n A 1 106 PHE 106 102 102 PHE PHE A . n A 1 107 THR 107 103 103 THR THR A . n A 1 108 ALA 108 104 104 ALA ALA A . n A 1 109 LEU 109 105 105 LEU LEU A . n A 1 110 ALA 110 106 106 ALA ALA A . n A 1 111 GLU 111 107 107 GLU GLU A . n A 1 112 GLU 112 108 108 GLU GLU A . n A 1 113 LYS 113 109 109 LYS LYS A . n A 1 114 PRO 114 110 110 PRO PRO A . n A 1 115 TYR 115 111 111 TYR TYR A . n A 1 116 ALA 116 112 112 ALA ALA A . n A 1 117 ILE 117 113 113 ILE ILE A . n A 1 118 PHE 118 114 114 PHE PHE A . n A 1 119 HIS 119 115 115 HIS HIS A . n A 1 120 PHE 120 116 116 PHE PHE A . n A 1 121 THR 121 117 117 THR THR A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 PRO 123 119 119 PRO PRO A . n A 1 124 VAL 124 120 120 VAL VAL A . n A 1 125 SER 125 121 121 SER SER A . n A 1 126 TYR 126 122 122 TYR TYR A . n A 1 127 LEU 127 123 123 LEU LEU A . n A 1 128 ILE 128 124 124 ILE ILE A . n A 1 129 ARG 129 125 125 ARG ARG A . n A 1 130 ILE 130 126 126 ILE ILE A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 ALA 132 128 128 ALA ALA A . n A 1 133 ALA 133 129 129 ALA ALA A . n A 1 134 LEU 134 130 130 LEU LEU A . n A 1 135 LYS 135 131 131 LYS LYS A . n A 1 136 LYS 136 132 132 LYS LYS A . n A 1 137 LYS 137 133 133 LYS LYS A . n A 1 138 ASN 138 134 134 ASN ASN A . n A 1 139 TYR 139 135 135 TYR TYR A . n A 1 140 LYS 140 136 136 LYS LYS A . n A 1 141 LEU 141 137 137 LEU LEU A . n A 1 142 ASN 142 138 138 ASN ASN A . n A 1 143 GLN 143 139 139 GLN GLN A . n A 1 144 TYR 144 140 140 TYR TYR A . n A 1 145 GLY 145 141 141 GLY GLY A . n A 1 146 LEU 146 142 142 LEU LEU A . n A 1 147 PHE 147 143 143 PHE PHE A . n A 1 148 LYS 148 144 144 LYS LYS A . n A 1 149 ASN 149 145 145 ASN ASN A . n A 1 150 GLN 150 146 146 GLN GLN A . n A 1 151 THR 151 147 147 THR THR A . n A 1 152 LEU 152 148 148 LEU LEU A . n A 1 153 VAL 153 149 149 VAL VAL A . n A 1 154 PRO 154 150 150 PRO PRO A . n A 1 155 LEU 155 151 151 LEU LEU A . n A 1 156 LYS 156 152 152 LYS LYS A . n A 1 157 ILE 157 153 153 ILE ILE A . n A 1 158 THR 158 154 154 THR THR A . n A 1 159 THR 159 155 155 THR THR A . n A 1 160 GLU 160 156 156 GLU GLU A . n A 1 161 LYS 161 157 157 LYS LYS A . n A 1 162 GLU 162 158 158 GLU GLU A . n A 1 163 LEU 163 159 159 LEU LEU A . n A 1 164 ILE 164 160 160 ILE ILE A . n A 1 165 LYS 165 161 161 LYS LYS A . n A 1 166 GLU 166 162 162 GLU GLU A . n A 1 167 LEU 167 163 163 LEU LEU A . n A 1 168 GLY 168 164 164 GLY GLY A . n A 1 169 PHE 169 165 165 PHE PHE A . n A 1 170 THR 170 166 166 THR THR A . n A 1 171 TYR 171 167 167 TYR TYR A . n A 1 172 ARG 172 168 168 ARG ARG A . n A 1 173 ILE 173 169 169 ILE ILE A . n A 1 174 PRO 174 170 170 PRO PRO A . n A 1 175 LYS 175 171 171 LYS LYS A . n A 1 176 LYS 176 172 172 LYS LYS A . n A 1 177 ARG 177 173 173 ARG ARG A . n A 1 178 LEU 178 174 174 LEU LEU A . n B 1 1 SER 1 -3 ? ? ? B . n B 1 2 GLY 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 GLY 4 0 0 GLY GLY B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 LEU 6 2 2 LEU LEU B . n B 1 7 THR 7 3 3 THR THR B . n B 1 8 LEU 8 4 4 LEU LEU B . n B 1 9 ILE 9 5 5 ILE ILE B . n B 1 10 GLN 10 6 6 GLN GLN B . n B 1 11 GLY 11 7 7 GLY GLY B . n B 1 12 LYS 12 8 8 LYS LYS B . n B 1 13 LYS 13 9 9 LYS LYS B . n B 1 14 ILE 14 10 10 ILE ILE B . n B 1 15 VAL 15 11 11 VAL VAL B . n B 1 16 ASN 16 12 12 ASN ASN B . n B 1 17 HIS 17 13 13 HIS HIS B . n B 1 18 LEU 18 14 14 LEU LEU B . n B 1 19 ARG 19 15 15 ARG ARG B . n B 1 20 SER 20 16 16 SER SER B . n B 1 21 ARG 21 17 17 ARG ARG B . n B 1 22 LEU 22 18 18 LEU LEU B . n B 1 23 ALA 23 19 19 ALA ALA B . n B 1 24 PHE 24 20 20 PHE PHE B . n B 1 25 GLU 25 21 21 GLU GLU B . n B 1 26 TYR 26 22 22 TYR TYR B . n B 1 27 ASN 27 23 ? ? ? B . n B 1 28 GLY 28 24 24 GLY GLY B . n B 1 29 GLN 29 25 25 GLN GLN B . n B 1 30 LEU 30 26 26 LEU LEU B . n B 1 31 ILE 31 27 27 ILE ILE B . n B 1 32 LYS 32 28 28 LYS LYS B . n B 1 33 ILE 33 29 29 ILE ILE B . n B 1 34 LEU 34 30 30 LEU LEU B . n B 1 35 SER 35 31 31 SER SER B . n B 1 36 LYS 36 32 32 LYS LYS B . n B 1 37 ASN 37 33 33 ASN ASN B . n B 1 38 ILE 38 34 34 ILE ILE B . n B 1 39 VAL 39 35 35 VAL VAL B . n B 1 40 ALA 40 36 36 ALA ALA B . n B 1 41 VAL 41 37 37 VAL VAL B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 SER 43 39 39 SER SER B . n B 1 44 LEU 44 40 40 LEU LEU B . n B 1 45 ARG 45 41 41 ARG ARG B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 GLU 47 43 43 GLU GLU B . n B 1 48 GLU 48 44 44 GLU GLU B . n B 1 49 LYS 49 45 45 LYS LYS B . n B 1 50 MET 50 46 46 MET MET B . n B 1 51 LEU 51 47 47 LEU LEU B . n B 1 52 ASN 52 48 48 ASN ASN B . n B 1 53 ASP 53 49 49 ASP ASP B . n B 1 54 VAL 54 50 50 VAL VAL B . n B 1 55 ASP 55 51 51 ASP ASP B . n B 1 56 LEU 56 52 52 LEU LEU B . n B 1 57 LEU 57 53 53 LEU LEU B . n B 1 58 ILE 58 54 54 ILE ILE B . n B 1 59 ILE 59 55 55 ILE ILE B . n B 1 60 VAL 60 56 56 VAL VAL B . n B 1 61 PRO 61 57 57 PRO PRO B . n B 1 62 GLU 62 58 58 GLU GLU B . n B 1 63 LYS 63 59 59 LYS LYS B . n B 1 64 LYS 64 60 60 LYS LYS B . n B 1 65 LEU 65 61 61 LEU LEU B . n B 1 66 LEU 66 62 62 LEU LEU B . n B 1 67 LYS 67 63 63 LYS LYS B . n B 1 68 HIS 68 64 64 HIS HIS B . n B 1 69 VAL 69 65 65 VAL VAL B . n B 1 70 LEU 70 66 66 LEU LEU B . n B 1 71 PRO 71 67 67 PRO PRO B . n B 1 72 ASN 72 68 68 ASN ASN B . n B 1 73 ILE 73 69 69 ILE ILE B . n B 1 74 ARG 74 70 70 ARG ARG B . n B 1 75 ILE 75 71 71 ILE ILE B . n B 1 76 LYS 76 72 72 LYS LYS B . n B 1 77 GLY 77 73 73 GLY GLY B . n B 1 78 LEU 78 74 74 LEU LEU B . n B 1 79 SER 79 75 75 SER SER B . n B 1 80 PHE 80 76 76 PHE PHE B . n B 1 81 SER 81 77 77 SER SER B . n B 1 82 VAL 82 78 78 VAL VAL B . n B 1 83 LYS 83 79 79 LYS LYS B . n B 1 84 VAL 84 80 80 VAL VAL B . n B 1 85 CYS 85 81 81 CYS CYS B . n B 1 86 GLY 86 82 82 GLY GLY B . n B 1 87 GLU 87 83 83 GLU GLU B . n B 1 88 ARG 88 84 84 ARG ARG B . n B 1 89 LYS 89 85 85 LYS LYS B . n B 1 90 CYS 90 86 86 CYS CYS B . n B 1 91 VAL 91 87 87 VAL VAL B . n B 1 92 LEU 92 88 88 LEU LEU B . n B 1 93 PHE 93 89 89 PHE PHE B . n B 1 94 ILE 94 90 90 ILE ILE B . n B 1 95 GLU 95 91 91 GLU GLU B . n B 1 96 TRP 96 92 92 TRP TRP B . n B 1 97 GLU 97 93 93 GLU GLU B . n B 1 98 LYS 98 94 94 LYS LYS B . n B 1 99 LYS 99 95 95 LYS LYS B . n B 1 100 THR 100 96 96 THR THR B . n B 1 101 TYR 101 97 97 TYR TYR B . n B 1 102 GLN 102 98 98 GLN GLN B . n B 1 103 LEU 103 99 99 LEU LEU B . n B 1 104 ASP 104 100 100 ASP ASP B . n B 1 105 LEU 105 101 101 LEU LEU B . n B 1 106 PHE 106 102 102 PHE PHE B . n B 1 107 THR 107 103 103 THR THR B . n B 1 108 ALA 108 104 104 ALA ALA B . n B 1 109 LEU 109 105 105 LEU LEU B . n B 1 110 ALA 110 106 106 ALA ALA B . n B 1 111 GLU 111 107 107 GLU GLU B . n B 1 112 GLU 112 108 108 GLU GLU B . n B 1 113 LYS 113 109 109 LYS LYS B . n B 1 114 PRO 114 110 110 PRO PRO B . n B 1 115 TYR 115 111 111 TYR TYR B . n B 1 116 ALA 116 112 112 ALA ALA B . n B 1 117 ILE 117 113 113 ILE ILE B . n B 1 118 PHE 118 114 114 PHE PHE B . n B 1 119 HIS 119 115 115 HIS HIS B . n B 1 120 PHE 120 116 116 PHE PHE B . n B 1 121 THR 121 117 117 THR THR B . n B 1 122 GLY 122 118 118 GLY GLY B . n B 1 123 PRO 123 119 119 PRO PRO B . n B 1 124 VAL 124 120 120 VAL VAL B . n B 1 125 SER 125 121 121 SER SER B . n B 1 126 TYR 126 122 122 TYR TYR B . n B 1 127 LEU 127 123 123 LEU LEU B . n B 1 128 ILE 128 124 124 ILE ILE B . n B 1 129 ARG 129 125 125 ARG ARG B . n B 1 130 ILE 130 126 126 ILE ILE B . n B 1 131 ARG 131 127 127 ARG ARG B . n B 1 132 ALA 132 128 128 ALA ALA B . n B 1 133 ALA 133 129 129 ALA ALA B . n B 1 134 LEU 134 130 130 LEU LEU B . n B 1 135 LYS 135 131 131 LYS LYS B . n B 1 136 LYS 136 132 132 LYS LYS B . n B 1 137 LYS 137 133 133 LYS LYS B . n B 1 138 ASN 138 134 134 ASN ASN B . n B 1 139 TYR 139 135 135 TYR TYR B . n B 1 140 LYS 140 136 136 LYS LYS B . n B 1 141 LEU 141 137 137 LEU LEU B . n B 1 142 ASN 142 138 138 ASN ASN B . n B 1 143 GLN 143 139 139 GLN GLN B . n B 1 144 TYR 144 140 140 TYR TYR B . n B 1 145 GLY 145 141 141 GLY GLY B . n B 1 146 LEU 146 142 142 LEU LEU B . n B 1 147 PHE 147 143 143 PHE PHE B . n B 1 148 LYS 148 144 144 LYS LYS B . n B 1 149 ASN 149 145 145 ASN ASN B . n B 1 150 GLN 150 146 146 GLN GLN B . n B 1 151 THR 151 147 147 THR THR B . n B 1 152 LEU 152 148 148 LEU LEU B . n B 1 153 VAL 153 149 149 VAL VAL B . n B 1 154 PRO 154 150 150 PRO PRO B . n B 1 155 LEU 155 151 151 LEU LEU B . n B 1 156 LYS 156 152 152 LYS LYS B . n B 1 157 ILE 157 153 153 ILE ILE B . n B 1 158 THR 158 154 154 THR THR B . n B 1 159 THR 159 155 155 THR THR B . n B 1 160 GLU 160 156 156 GLU GLU B . n B 1 161 LYS 161 157 157 LYS LYS B . n B 1 162 GLU 162 158 158 GLU GLU B . n B 1 163 LEU 163 159 159 LEU LEU B . n B 1 164 ILE 164 160 160 ILE ILE B . n B 1 165 LYS 165 161 161 LYS LYS B . n B 1 166 GLU 166 162 162 GLU GLU B . n B 1 167 LEU 167 163 163 LEU LEU B . n B 1 168 GLY 168 164 164 GLY GLY B . n B 1 169 PHE 169 165 165 PHE PHE B . n B 1 170 THR 170 166 166 THR THR B . n B 1 171 TYR 171 167 167 TYR TYR B . n B 1 172 ARG 172 168 168 ARG ARG B . n B 1 173 ILE 173 169 169 ILE ILE B . n B 1 174 PRO 174 170 170 PRO PRO B . n B 1 175 LYS 175 171 171 LYS LYS B . n B 1 176 LYS 176 172 172 LYS LYS B . n B 1 177 ARG 177 173 173 ARG ARG B . n B 1 178 LEU 178 174 174 LEU LEU B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DA 2 2 2 DA DA C . n C 2 3 DG 3 3 3 DG DG C . n C 2 4 DG 4 4 4 DG DG C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DT 6 6 6 DT DT C . n C 2 7 DC 7 7 7 DC DC C . n C 2 8 DC 8 8 8 DC DC C . n C 2 9 DT 9 9 9 DT DT C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DA 2 2 2 DA DA D . n D 2 3 DG 3 3 3 DG DG D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DA 5 5 5 DA DA D . n D 2 6 DT 6 6 6 DT DT D . n D 2 7 DC 7 7 7 DC DC D . n D 2 8 DC 8 8 8 DC DC D . n D 2 9 DT 9 9 9 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP 1 201 11 GTP GTP A . F 4 MN 1 202 1 MN MN A . G 3 GTP 1 201 11 GTP GTP B . H 4 MN 1 202 2 MN MN B . I 5 SO4 1 203 1 SO4 SO4 B . J 5 SO4 1 101 2 SO4 SO4 D . K 6 HOH 1 301 36 HOH HOH A . K 6 HOH 2 302 1 HOH HOH A . K 6 HOH 3 303 41 HOH HOH A . K 6 HOH 4 304 34 HOH HOH A . K 6 HOH 5 305 19 HOH HOH A . K 6 HOH 6 306 38 HOH HOH A . K 6 HOH 7 307 32 HOH HOH A . K 6 HOH 8 308 28 HOH HOH A . K 6 HOH 9 309 20 HOH HOH A . K 6 HOH 10 310 18 HOH HOH A . K 6 HOH 11 311 56 HOH HOH A . K 6 HOH 12 312 16 HOH HOH A . K 6 HOH 13 313 4 HOH HOH A . K 6 HOH 14 314 5 HOH HOH A . K 6 HOH 15 315 60 HOH HOH A . K 6 HOH 16 316 39 HOH HOH A . K 6 HOH 17 317 76 HOH HOH A . K 6 HOH 18 318 8 HOH HOH A . K 6 HOH 19 319 9 HOH HOH A . K 6 HOH 20 320 25 HOH HOH A . K 6 HOH 21 321 75 HOH HOH A . K 6 HOH 22 322 64 HOH HOH A . K 6 HOH 23 323 23 HOH HOH A . K 6 HOH 24 324 13 HOH HOH A . K 6 HOH 25 325 65 HOH HOH A . K 6 HOH 26 326 68 HOH HOH A . K 6 HOH 27 327 55 HOH HOH A . K 6 HOH 28 328 37 HOH HOH A . K 6 HOH 29 329 77 HOH HOH A . K 6 HOH 30 330 21 HOH HOH A . K 6 HOH 31 331 54 HOH HOH A . K 6 HOH 32 332 73 HOH HOH A . K 6 HOH 33 333 10 HOH HOH A . K 6 HOH 34 334 33 HOH HOH A . K 6 HOH 35 335 72 HOH HOH A . K 6 HOH 36 336 71 HOH HOH A . K 6 HOH 37 337 40 HOH HOH A . L 6 HOH 1 301 2 HOH HOH B . L 6 HOH 2 302 27 HOH HOH B . L 6 HOH 3 303 44 HOH HOH B . L 6 HOH 4 304 12 HOH HOH B . L 6 HOH 5 305 78 HOH HOH B . L 6 HOH 6 306 26 HOH HOH B . L 6 HOH 7 307 14 HOH HOH B . L 6 HOH 8 308 43 HOH HOH B . L 6 HOH 9 309 6 HOH HOH B . L 6 HOH 10 310 7 HOH HOH B . L 6 HOH 11 311 80 HOH HOH B . L 6 HOH 12 312 67 HOH HOH B . L 6 HOH 13 313 45 HOH HOH B . L 6 HOH 14 314 35 HOH HOH B . L 6 HOH 15 315 66 HOH HOH B . L 6 HOH 16 316 79 HOH HOH B . L 6 HOH 17 317 22 HOH HOH B . L 6 HOH 18 318 46 HOH HOH B . L 6 HOH 19 319 42 HOH HOH B . L 6 HOH 20 320 47 HOH HOH B . L 6 HOH 21 321 11 HOH HOH B . M 6 HOH 1 101 24 HOH HOH C . M 6 HOH 2 102 50 HOH HOH C . M 6 HOH 3 103 62 HOH HOH C . M 6 HOH 4 104 29 HOH HOH C . M 6 HOH 5 105 3 HOH HOH C . M 6 HOH 6 106 59 HOH HOH C . M 6 HOH 7 107 49 HOH HOH C . N 6 HOH 1 201 70 HOH HOH D . N 6 HOH 2 202 48 HOH HOH D . N 6 HOH 3 203 31 HOH HOH D . N 6 HOH 4 204 51 HOH HOH D . N 6 HOH 5 205 63 HOH HOH D . N 6 HOH 6 206 61 HOH HOH D . N 6 HOH 7 207 53 HOH HOH D . N 6 HOH 8 208 30 HOH HOH D . N 6 HOH 9 209 81 HOH HOH D . N 6 HOH 10 210 69 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER -3 ? OG ? A SER 1 OG 2 1 Y 1 A LYS 9 ? CD ? A LYS 13 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 13 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 13 NZ 5 1 Y 1 A GLN 25 ? CG ? A GLN 29 CG 6 1 Y 1 A GLN 25 ? CD ? A GLN 29 CD 7 1 Y 1 A GLN 25 ? OE1 ? A GLN 29 OE1 8 1 Y 1 A GLN 25 ? NE2 ? A GLN 29 NE2 9 1 Y 1 A LYS 28 ? CE ? A LYS 32 CE 10 1 Y 1 A LYS 28 ? NZ ? A LYS 32 NZ 11 1 Y 1 A LYS 45 ? CD ? A LYS 49 CD 12 1 Y 1 A LYS 45 ? CE ? A LYS 49 CE 13 1 Y 1 A LYS 45 ? NZ ? A LYS 49 NZ 14 1 Y 1 A LYS 60 ? NZ ? A LYS 64 NZ 15 1 Y 1 A LYS 63 ? CE ? A LYS 67 CE 16 1 Y 1 A LYS 63 ? NZ ? A LYS 67 NZ 17 1 Y 1 A LYS 72 ? CG ? A LYS 76 CG 18 1 Y 1 A LYS 72 ? CD ? A LYS 76 CD 19 1 Y 1 A LYS 72 ? CE ? A LYS 76 CE 20 1 Y 1 A LYS 72 ? NZ ? A LYS 76 NZ 21 1 Y 1 A LYS 79 ? CD ? A LYS 83 CD 22 1 Y 1 A LYS 79 ? CE ? A LYS 83 CE 23 1 Y 1 A LYS 79 ? NZ ? A LYS 83 NZ 24 1 Y 1 A LYS 94 ? CG ? A LYS 98 CG 25 1 Y 1 A LYS 94 ? CD ? A LYS 98 CD 26 1 Y 1 A LYS 94 ? CE ? A LYS 98 CE 27 1 Y 1 A LYS 94 ? NZ ? A LYS 98 NZ 28 1 Y 1 A GLU 107 ? CG ? A GLU 111 CG 29 1 Y 1 A GLU 107 ? CD ? A GLU 111 CD 30 1 Y 1 A GLU 107 ? OE1 ? A GLU 111 OE1 31 1 Y 1 A GLU 107 ? OE2 ? A GLU 111 OE2 32 1 Y 1 A LYS 133 ? NZ ? A LYS 137 NZ 33 1 Y 1 A GLN 146 ? CG ? A GLN 150 CG 34 1 Y 1 A GLN 146 ? CD ? A GLN 150 CD 35 1 Y 1 A GLN 146 ? OE1 ? A GLN 150 OE1 36 1 Y 1 A GLN 146 ? NE2 ? A GLN 150 NE2 37 1 Y 1 A LYS 152 ? CD ? A LYS 156 CD 38 1 Y 1 A LYS 152 ? CE ? A LYS 156 CE 39 1 Y 1 A LYS 152 ? NZ ? A LYS 156 NZ 40 1 Y 1 A LYS 172 ? CE ? A LYS 176 CE 41 1 Y 1 A LYS 172 ? NZ ? A LYS 176 NZ 42 1 Y 1 B LYS 9 ? NZ ? B LYS 13 NZ 43 1 Y 1 B TYR 22 ? C ? B TYR 26 C 44 1 Y 1 B TYR 22 ? O ? B TYR 26 O 45 1 Y 1 B GLN 25 ? CG ? B GLN 29 CG 46 1 Y 1 B GLN 25 ? CD ? B GLN 29 CD 47 1 Y 1 B GLN 25 ? OE1 ? B GLN 29 OE1 48 1 Y 1 B GLN 25 ? NE2 ? B GLN 29 NE2 49 1 Y 1 B LYS 28 ? CD ? B LYS 32 CD 50 1 Y 1 B LYS 28 ? CE ? B LYS 32 CE 51 1 Y 1 B LYS 28 ? NZ ? B LYS 32 NZ 52 1 Y 1 B LYS 32 ? CD ? B LYS 36 CD 53 1 Y 1 B LYS 32 ? CE ? B LYS 36 CE 54 1 Y 1 B LYS 32 ? NZ ? B LYS 36 NZ 55 1 Y 1 B GLU 58 ? CG ? B GLU 62 CG 56 1 Y 1 B GLU 58 ? CD ? B GLU 62 CD 57 1 Y 1 B GLU 58 ? OE1 ? B GLU 62 OE1 58 1 Y 1 B GLU 58 ? OE2 ? B GLU 62 OE2 59 1 Y 1 B LYS 59 ? CD ? B LYS 63 CD 60 1 Y 1 B LYS 59 ? CE ? B LYS 63 CE 61 1 Y 1 B LYS 59 ? NZ ? B LYS 63 NZ 62 1 Y 1 B LYS 60 ? CG ? B LYS 64 CG 63 1 Y 1 B LYS 60 ? CD ? B LYS 64 CD 64 1 Y 1 B LYS 60 ? CE ? B LYS 64 CE 65 1 Y 1 B LYS 60 ? NZ ? B LYS 64 NZ 66 1 Y 1 B LYS 63 ? CG ? B LYS 67 CG 67 1 Y 1 B LYS 63 ? CD ? B LYS 67 CD 68 1 Y 1 B LYS 63 ? CE ? B LYS 67 CE 69 1 Y 1 B LYS 63 ? NZ ? B LYS 67 NZ 70 1 Y 1 B ARG 70 ? CG ? B ARG 74 CG 71 1 Y 1 B ARG 70 ? CD ? B ARG 74 CD 72 1 Y 1 B ARG 70 ? NE ? B ARG 74 NE 73 1 Y 1 B ARG 70 ? CZ ? B ARG 74 CZ 74 1 Y 1 B ARG 70 ? NH1 ? B ARG 74 NH1 75 1 Y 1 B ARG 70 ? NH2 ? B ARG 74 NH2 76 1 Y 1 B LYS 72 ? CG ? B LYS 76 CG 77 1 Y 1 B LYS 72 ? CD ? B LYS 76 CD 78 1 Y 1 B LYS 72 ? CE ? B LYS 76 CE 79 1 Y 1 B LYS 72 ? NZ ? B LYS 76 NZ 80 1 Y 1 B SER 75 ? OG ? B SER 79 OG 81 1 Y 1 B LYS 79 ? CE ? B LYS 83 CE 82 1 Y 1 B LYS 79 ? NZ ? B LYS 83 NZ 83 1 Y 1 B GLU 91 ? CG ? B GLU 95 CG 84 1 Y 1 B GLU 91 ? CD ? B GLU 95 CD 85 1 Y 1 B GLU 91 ? OE1 ? B GLU 95 OE1 86 1 Y 1 B GLU 91 ? OE2 ? B GLU 95 OE2 87 1 Y 1 B GLU 93 ? CG ? B GLU 97 CG 88 1 Y 1 B GLU 93 ? CD ? B GLU 97 CD 89 1 Y 1 B GLU 93 ? OE1 ? B GLU 97 OE1 90 1 Y 1 B GLU 93 ? OE2 ? B GLU 97 OE2 91 1 Y 1 B LYS 94 ? CG ? B LYS 98 CG 92 1 Y 1 B LYS 94 ? CD ? B LYS 98 CD 93 1 Y 1 B LYS 94 ? CE ? B LYS 98 CE 94 1 Y 1 B LYS 94 ? NZ ? B LYS 98 NZ 95 1 Y 1 B LYS 95 ? CD ? B LYS 99 CD 96 1 Y 1 B LYS 95 ? CE ? B LYS 99 CE 97 1 Y 1 B LYS 95 ? NZ ? B LYS 99 NZ 98 1 Y 1 B LYS 132 ? CD ? B LYS 136 CD 99 1 Y 1 B LYS 132 ? CE ? B LYS 136 CE 100 1 Y 1 B LYS 132 ? NZ ? B LYS 136 NZ 101 1 Y 1 B LYS 133 ? CE ? B LYS 137 CE 102 1 Y 1 B LYS 133 ? NZ ? B LYS 137 NZ 103 1 Y 1 B LYS 157 ? CD ? B LYS 161 CD 104 1 Y 1 B LYS 157 ? CE ? B LYS 161 CE 105 1 Y 1 B LYS 157 ? NZ ? B LYS 161 NZ 106 1 Y 1 B LYS 161 ? CG ? B LYS 165 CG 107 1 Y 1 B LYS 161 ? CD ? B LYS 165 CD 108 1 Y 1 B LYS 161 ? CE ? B LYS 165 CE 109 1 Y 1 B LYS 161 ? NZ ? B LYS 165 NZ 110 1 Y 1 B ARG 168 ? NE ? B ARG 172 NE 111 1 Y 1 B ARG 168 ? CZ ? B ARG 172 CZ 112 1 Y 1 B ARG 168 ? NH1 ? B ARG 172 NH1 113 1 Y 1 B ARG 168 ? NH2 ? B ARG 172 NH2 114 1 Y 1 B LYS 171 ? CD ? B LYS 175 CD 115 1 Y 1 B LYS 171 ? CE ? B LYS 175 CE 116 1 Y 1 B LYS 171 ? NZ ? B LYS 175 NZ 117 1 Y 1 B LYS 172 ? CD ? B LYS 176 CD 118 1 Y 1 B LYS 172 ? CE ? B LYS 176 CE 119 1 Y 1 B LYS 172 ? NZ ? B LYS 176 NZ 120 1 Y 1 C DT 9 ? "O3'" ? C DT 9 "O3'" 121 1 Y 1 D DT 9 ? "O3'" ? D DT 9 "O3'" 122 1 N 1 A GTP 201 ? "O2'" ? E GTP 1 "O2'" 123 1 N 1 B GTP 201 ? "O2'" ? G GTP 1 "O2'" # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8ILD _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.706 _cell.length_a_esd ? _cell.length_b 75.441 _cell.length_b_esd ? _cell.length_c 108.450 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ILD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ILD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Ammonium acetate (0.2 M), BIS-Tris pH=5.5 (0.1 M), 20% PEG8000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-03-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8ILD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21028 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 26.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.814 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1477 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.256 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 6.97 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -5.53 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.44 _refine.B_iso_max ? _refine.B_iso_mean 49.861 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ILD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.25 _refine.ls_d_res_low 28.52 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21028 _refine.ls_number_reflns_R_free 1128 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.18 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21494 _refine.ls_R_factor_R_free 0.26325 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21216 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.245 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 18.726 _refine.overall_SU_ML 0.203 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 28.52 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 3270 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2763 _refine_hist.pdbx_number_atoms_nucleic_acid 358 _refine_hist.pdbx_number_atoms_ligand 74 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.018 3298 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 3079 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.164 1.906 4529 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.064 3.000 7043 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.175 5.000 349 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 30.797 22.885 104 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.202 15.000 521 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.005 15.000 18 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.069 0.200 515 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 3307 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 725 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 1.709 3.000 6377 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 74.507 5.000 25 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 10.191 5.000 6328 ? r_sphericity_bonded ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? 0.07 ? 0.05 1 'interatomic distance' ? A 10533 ? ? 1 'X-RAY DIFFRACTION' 2 ? ? 0.07 ? 0.05 2 'interatomic distance' ? B 10533 ? ? 1 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.250 _refine_ls_shell.d_res_low 2.308 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.number_reflns_R_work 1477 _refine_ls_shell.percent_reflns_obs 93.03 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.300 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.333 # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 8ILD _struct.title 'The crystal structure of native dGTP:DNApre-I:Pol X substrate ternary complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ILD _struct_keywords.text 'DNA polymerase, substrate complex, REPLICATION-DNA complex' _struct_keywords.pdbx_keywords REPLICATION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DPOLX_ASFB7 P42494 ? 1 ;MLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKV CGERKCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVPLKITTEKELI KELGFTYRIPKKRL ; 1 2 PDB 8ILD 8ILD ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ILD A 5 ? 178 ? P42494 1 ? 174 ? 1 174 2 1 8ILD B 5 ? 178 ? P42494 1 ? 174 ? 1 174 3 2 8ILD C 1 ? 9 ? 8ILD 1 ? 9 ? 1 9 4 2 8ILD D 1 ? 9 ? 8ILD 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8ILD SER A 1 ? UNP P42494 ? ? 'expression tag' -3 1 1 8ILD GLY A 2 ? UNP P42494 ? ? 'expression tag' -2 2 1 8ILD GLY A 3 ? UNP P42494 ? ? 'expression tag' -1 3 1 8ILD GLY A 4 ? UNP P42494 ? ? 'expression tag' 0 4 2 8ILD SER B 1 ? UNP P42494 ? ? 'expression tag' -3 5 2 8ILD GLY B 2 ? UNP P42494 ? ? 'expression tag' -2 6 2 8ILD GLY B 3 ? UNP P42494 ? ? 'expression tag' -1 7 2 8ILD GLY B 4 ? UNP P42494 ? ? 'expression tag' 0 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6080 ? 1 MORE -45 ? 1 'SSA (A^2)' 18790 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 8 ? SER A 20 ? LEU A 4 SER A 16 1 ? 13 HELX_P HELX_P2 AA2 LEU A 34 ? LYS A 36 ? LEU A 30 LYS A 32 5 ? 3 HELX_P HELX_P3 AA3 VAL A 41 ? ARG A 46 ? VAL A 37 ARG A 42 1 ? 6 HELX_P HELX_P4 AA4 GLU A 62 ? LEU A 66 ? GLU A 58 LEU A 62 5 ? 5 HELX_P HELX_P5 AA5 GLU A 112 ? GLY A 122 ? GLU A 108 GLY A 118 1 ? 11 HELX_P HELX_P6 AA6 PRO A 123 ? LYS A 137 ? PRO A 119 LYS A 133 1 ? 15 HELX_P HELX_P7 AA7 THR A 159 ? GLY A 168 ? THR A 155 GLY A 164 1 ? 10 HELX_P HELX_P8 AA8 ILE A 173 ? ARG A 177 ? ILE A 169 ARG A 173 5 ? 5 HELX_P HELX_P9 AA9 LEU B 8 ? SER B 20 ? LEU B 4 SER B 16 1 ? 13 HELX_P HELX_P10 AB1 LEU B 34 ? LYS B 36 ? LEU B 30 LYS B 32 5 ? 3 HELX_P HELX_P11 AB2 VAL B 41 ? ARG B 46 ? VAL B 37 ARG B 42 1 ? 6 HELX_P HELX_P12 AB3 GLU B 62 ? LEU B 66 ? GLU B 58 LEU B 62 5 ? 5 HELX_P HELX_P13 AB4 GLU B 112 ? GLY B 122 ? GLU B 108 GLY B 118 1 ? 11 HELX_P HELX_P14 AB5 PRO B 123 ? LYS B 137 ? PRO B 119 LYS B 133 1 ? 15 HELX_P HELX_P15 AB6 THR B 159 ? LEU B 167 ? THR B 155 LEU B 163 1 ? 9 HELX_P HELX_P16 AB7 ILE B 173 ? ARG B 177 ? ILE B 169 ARG B 173 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 53 OD1 ? ? ? 1_555 F MN . MN ? ? A ASP 49 A MN 202 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc2 metalc ? ? A ASP 55 OD2 ? ? ? 1_555 F MN . MN ? ? A ASP 51 A MN 202 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc3 metalc ? ? E GTP . O3G ? ? ? 1_555 F MN . MN ? ? A GTP 201 A MN 202 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc4 metalc ? ? E GTP . O1B ? ? ? 1_555 F MN . MN ? ? A GTP 201 A MN 202 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc5 metalc ? ? E GTP . O1A ? ? ? 1_555 F MN . MN ? ? A GTP 201 A MN 202 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc6 metalc ? ? F MN . MN ? ? ? 1_555 K HOH . O ? ? A MN 202 A HOH 302 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc7 metalc ? ? B ASP 53 OD1 ? ? ? 1_555 H MN . MN ? ? B ASP 49 B MN 202 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc8 metalc ? ? B ASP 55 OD2 ? ? ? 1_555 H MN . MN ? ? B ASP 51 B MN 202 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc9 metalc ? ? G GTP . O3G ? ? ? 1_555 H MN . MN ? ? B GTP 201 B MN 202 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc10 metalc ? ? G GTP . O1B ? ? ? 1_555 H MN . MN ? ? B GTP 201 B MN 202 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc11 metalc ? ? G GTP . O1A ? ? ? 1_555 H MN . MN ? ? B GTP 201 B MN 202 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc12 metalc ? ? H MN . MN ? ? ? 1_555 L HOH . O ? ? B MN 202 B HOH 301 1_555 ? ? ? ? ? ? ? 2.038 ? ? hydrog1 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 2 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 2 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 6 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 6 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 2 N1 ? ? C DT 9 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 2 N6 ? ? C DT 9 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 53 ? A ASP 49 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 55 ? A ASP 51 ? 1_555 100.3 ? 2 OD1 ? A ASP 53 ? A ASP 49 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O3G ? E GTP . ? A GTP 201 ? 1_555 92.0 ? 3 OD2 ? A ASP 55 ? A ASP 51 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O3G ? E GTP . ? A GTP 201 ? 1_555 167.7 ? 4 OD1 ? A ASP 53 ? A ASP 49 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1B ? E GTP . ? A GTP 201 ? 1_555 173.0 ? 5 OD2 ? A ASP 55 ? A ASP 51 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1B ? E GTP . ? A GTP 201 ? 1_555 84.7 ? 6 O3G ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1B ? E GTP . ? A GTP 201 ? 1_555 83.1 ? 7 OD1 ? A ASP 53 ? A ASP 49 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1A ? E GTP . ? A GTP 201 ? 1_555 100.7 ? 8 OD2 ? A ASP 55 ? A ASP 51 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1A ? E GTP . ? A GTP 201 ? 1_555 87.6 ? 9 O3G ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1A ? E GTP . ? A GTP 201 ? 1_555 89.8 ? 10 O1B ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O1A ? E GTP . ? A GTP 201 ? 1_555 84.3 ? 11 OD1 ? A ASP 53 ? A ASP 49 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 93.5 ? 12 OD2 ? A ASP 55 ? A ASP 51 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 90.7 ? 13 O3G ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 88.8 ? 14 O1B ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 81.5 ? 15 O1A ? E GTP . ? A GTP 201 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 165.7 ? 16 OD1 ? B ASP 53 ? B ASP 49 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 OD2 ? B ASP 55 ? B ASP 51 ? 1_555 97.6 ? 17 OD1 ? B ASP 53 ? B ASP 49 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O3G ? G GTP . ? B GTP 201 ? 1_555 101.5 ? 18 OD2 ? B ASP 55 ? B ASP 51 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O3G ? G GTP . ? B GTP 201 ? 1_555 159.6 ? 19 OD1 ? B ASP 53 ? B ASP 49 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1B ? G GTP . ? B GTP 201 ? 1_555 167.9 ? 20 OD2 ? B ASP 55 ? B ASP 51 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1B ? G GTP . ? B GTP 201 ? 1_555 89.2 ? 21 O3G ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1B ? G GTP . ? B GTP 201 ? 1_555 70.8 ? 22 OD1 ? B ASP 53 ? B ASP 49 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1A ? G GTP . ? B GTP 201 ? 1_555 111.9 ? 23 OD2 ? B ASP 55 ? B ASP 51 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1A ? G GTP . ? B GTP 201 ? 1_555 99.2 ? 24 O3G ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1A ? G GTP . ? B GTP 201 ? 1_555 80.3 ? 25 O1B ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O1A ? G GTP . ? B GTP 201 ? 1_555 76.6 ? 26 OD1 ? B ASP 53 ? B ASP 49 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O ? L HOH . ? B HOH 301 ? 1_555 91.0 ? 27 OD2 ? B ASP 55 ? B ASP 51 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O ? L HOH . ? B HOH 301 ? 1_555 94.6 ? 28 O3G ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O ? L HOH . ? B HOH 301 ? 1_555 78.0 ? 29 O1B ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O ? L HOH . ? B HOH 301 ? 1_555 78.5 ? 30 O1A ? G GTP . ? B GTP 201 ? 1_555 MN ? H MN . ? B MN 202 ? 1_555 O ? L HOH . ? B HOH 301 ? 1_555 151.2 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 122 A . ? GLY 118 A PRO 123 A ? PRO 119 A 1 -0.09 2 GLY 122 B . ? GLY 118 B PRO 123 B ? PRO 119 B 1 -1.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 5 ? AA4 ? 3 ? AA5 ? 2 ? AA6 ? 3 ? AA7 ? 5 ? AA8 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 6 ? THR A 7 ? LEU A 2 THR A 3 AA1 2 MET A 50 ? LEU A 51 ? MET A 46 LEU A 47 AA2 1 GLN A 29 ? LYS A 32 ? GLN A 25 LYS A 28 AA2 2 LEU A 22 ? TYR A 26 ? LEU A 18 TYR A 22 AA2 3 ILE A 73 ? ILE A 75 ? ILE A 69 ILE A 71 AA3 1 ILE A 38 ? ALA A 40 ? ILE A 34 ALA A 36 AA3 2 VAL A 54 ? VAL A 60 ? VAL A 50 VAL A 56 AA3 3 LYS A 99 ? LEU A 109 ? LYS A 95 LEU A 105 AA3 4 LYS A 89 ? TRP A 96 ? LYS A 85 TRP A 92 AA3 5 PHE A 80 ? CYS A 85 ? PHE A 76 CYS A 81 AA4 1 TYR A 139 ? LEU A 141 ? TYR A 135 LEU A 137 AA4 2 LEU A 146 ? LYS A 148 ? LEU A 142 LYS A 144 AA4 3 THR A 151 ? LEU A 152 ? THR A 147 LEU A 148 AA5 1 LEU B 6 ? THR B 7 ? LEU B 2 THR B 3 AA5 2 MET B 50 ? LEU B 51 ? MET B 46 LEU B 47 AA6 1 LEU B 30 ? LYS B 32 ? LEU B 26 LYS B 28 AA6 2 LEU B 22 ? GLU B 25 ? LEU B 18 GLU B 21 AA6 3 ILE B 73 ? ILE B 75 ? ILE B 69 ILE B 71 AA7 1 ILE B 38 ? ALA B 40 ? ILE B 34 ALA B 36 AA7 2 VAL B 54 ? VAL B 60 ? VAL B 50 VAL B 56 AA7 3 LYS B 99 ? LEU B 109 ? LYS B 95 LEU B 105 AA7 4 LYS B 89 ? TRP B 96 ? LYS B 85 TRP B 92 AA7 5 PHE B 80 ? CYS B 85 ? PHE B 76 CYS B 81 AA8 1 TYR B 139 ? LEU B 141 ? TYR B 135 LEU B 137 AA8 2 LEU B 146 ? LYS B 148 ? LEU B 142 LYS B 144 AA8 3 THR B 151 ? LEU B 152 ? THR B 147 LEU B 148 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 6 ? N LEU A 2 O LEU A 51 ? O LEU A 47 AA2 1 2 O GLN A 29 ? O GLN A 25 N TYR A 26 ? N TYR A 22 AA2 2 3 N ALA A 23 ? N ALA A 19 O ARG A 74 ? O ARG A 70 AA3 1 2 N VAL A 39 ? N VAL A 35 O LEU A 57 ? O LEU A 53 AA3 2 3 N VAL A 54 ? N VAL A 50 O ASP A 104 ? O ASP A 100 AA3 3 4 O LEU A 105 ? O LEU A 101 N CYS A 90 ? N CYS A 86 AA3 4 5 O VAL A 91 ? O VAL A 87 N LYS A 83 ? N LYS A 79 AA4 1 2 N LYS A 140 ? N LYS A 136 O PHE A 147 ? O PHE A 143 AA4 2 3 N LYS A 148 ? N LYS A 144 O THR A 151 ? O THR A 147 AA5 1 2 N LEU B 6 ? N LEU B 2 O LEU B 51 ? O LEU B 47 AA6 1 2 O ILE B 31 ? O ILE B 27 N PHE B 24 ? N PHE B 20 AA6 2 3 N ALA B 23 ? N ALA B 19 O ARG B 74 ? O ARG B 70 AA7 1 2 N VAL B 39 ? N VAL B 35 O LEU B 57 ? O LEU B 53 AA7 2 3 N VAL B 54 ? N VAL B 50 O ASP B 104 ? O ASP B 100 AA7 3 4 O LEU B 105 ? O LEU B 101 N CYS B 90 ? N CYS B 86 AA7 4 5 O VAL B 91 ? O VAL B 87 N LYS B 83 ? N LYS B 79 AA8 1 2 N LYS B 140 ? N LYS B 136 O PHE B 147 ? O PHE B 143 AA8 2 3 N LYS B 148 ? N LYS B 144 O THR B 151 ? O THR B 147 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 118.39 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 8.59 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 37 ? ? -126.50 -163.93 2 1 LYS A 79 ? ? -90.35 -65.40 3 1 GLU A 93 ? ? 38.41 53.77 4 1 VAL B 37 ? ? -127.59 -164.78 5 1 VAL B 65 ? ? -65.69 -70.10 6 1 GLU B 93 ? ? 63.40 -126.35 7 1 LYS B 152 ? ? -100.23 66.18 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 18.6344 12.6434 2.5943 0.0065 ? -0.0056 ? 0.0213 ? 0.2797 ? 0.0129 ? 0.2130 ? 1.0973 ? 0.0514 ? -0.3963 ? 1.7982 ? -0.2343 ? 1.3441 ? -0.0617 ? 0.0169 ? -0.1133 ? -0.0101 ? 0.0317 ? 0.0877 ? -0.0215 ? -0.0200 ? 0.0300 ? 2 'X-RAY DIFFRACTION' ? refined 17.8257 34.6618 6.6896 0.0433 ? -0.0399 ? -0.0051 ? 0.2542 ? -0.0128 ? 0.2171 ? 1.4274 ? -0.5430 ? -0.2692 ? 1.3217 ? 0.3208 ? 2.9995 ? 0.1045 ? -0.0887 ? 0.1913 ? -0.1993 ? -0.0197 ? 0.0092 ? -0.1863 ? 0.0621 ? -0.0848 ? 3 'X-RAY DIFFRACTION' ? refined 52.2629 21.3522 30.4832 0.0407 ? -0.0740 ? -0.0511 ? 0.3175 ? 0.0419 ? 0.2115 ? 2.3061 ? -0.5011 ? 0.1195 ? 2.1731 ? 0.8098 ? 1.8790 ? -0.0421 ? 0.2201 ? 0.0277 ? 0.0013 ? -0.0644 ? -0.3576 ? -0.2482 ? 0.4716 ? 0.1066 ? 4 'X-RAY DIFFRACTION' ? refined 33.8888 26.4859 41.4251 0.0566 ? 0.0670 ? -0.0146 ? 0.2651 ? -0.0130 ? 0.2038 ? 1.1019 ? -0.3293 ? 0.5883 ? 2.5011 ? 0.8430 ? 3.6612 ? -0.2403 ? -0.3572 ? 0.0926 ? 0.0109 ? -0.0630 ? 0.1564 ? -0.1052 ? -0.2290 ? 0.3033 ? 5 'X-RAY DIFFRACTION' ? refined 31.3098 20.3079 17.6176 0.0614 ? 0.0250 ? -0.0507 ? 0.3396 ? -0.0560 ? 0.2437 ? 0.7118 ? -0.3139 ? 0.9284 ? 0.2171 ? -0.5634 ? 1.5204 ? -0.0663 ? -0.0459 ? 0.0177 ? 0.0748 ? 0.0539 ? -0.0146 ? -0.1668 ? -0.0821 ? 0.0124 ? 6 'X-RAY DIFFRACTION' ? refined 33.9611 21.0937 19.9149 0.0741 ? 0.0246 ? -0.0037 ? 0.2552 ? -0.0010 ? 0.2324 ? 1.2917 ? 0.3179 ? 0.8998 ? 0.4593 ? -0.6739 ? 2.7619 ? -0.1104 ? 0.0978 ? -0.0945 ? 0.0012 ? -0.0051 ? -0.0644 ? -0.1477 ? 0.1521 ? 0.1155 ? 7 'X-RAY DIFFRACTION' ? refined 38.9471 15.8181 33.9969 0.1302 ? 0.0197 ? 0.0239 ? 0.1804 ? -0.0025 ? 0.1349 ? 15.2260 ? -9.6003 ? 7.3829 ? 14.6696 ? -0.3218 ? 6.1492 ? -0.2843 ? -0.5396 ? 0.1472 ? 0.2826 ? 0.2884 ? -0.1780 ? -0.1073 ? -0.4182 ? -0.0041 ? 8 'X-RAY DIFFRACTION' ? refined 27.0398 24.9429 3.0111 0.0919 ? -0.0137 ? -0.0454 ? 0.2926 ? -0.0490 ? 0.2480 ? 3.2075 ? -1.0737 ? -2.6028 ? 9.5472 ? 7.4584 ? 6.8411 ? 0.0907 ? -0.0534 ? -0.0902 ? 0.0402 ? -0.3643 ? 0.2542 ? -0.0369 ? -0.2461 ? 0.2736 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A -2 ? ? ? A 105 ? ? ? 2 'X-RAY DIFFRACTION' 2 ? ? A 106 ? ? ? A 174 ? ? ? 3 'X-RAY DIFFRACTION' 3 ? ? B 0 ? ? ? B 105 ? ? ? 4 'X-RAY DIFFRACTION' 4 ? ? B 106 ? ? ? B 174 ? ? ? 5 'X-RAY DIFFRACTION' 5 ? ? C 1 ? ? ? C 9 ? ? ? 6 'X-RAY DIFFRACTION' 6 ? ? D 1 ? ? ? D 9 ? ? ? 7 'X-RAY DIFFRACTION' 7 ? ? B 201 ? ? ? B 201 ? ? ? 8 'X-RAY DIFFRACTION' 8 ? ? A 201 ? ? ? A 201 ? ? ? # _pdbx_entry_details.entry_id 8ILD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER -3 ? B SER 1 2 1 Y 1 B GLY -2 ? B GLY 2 3 1 Y 1 B GLY -1 ? B GLY 3 4 1 Y 1 B ASN 23 ? B ASN 27 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 GTP PG P N N 280 GTP O1G O N N 281 GTP O2G O N N 282 GTP O3G O N N 283 GTP O3B O N N 284 GTP PB P N N 285 GTP O1B O N N 286 GTP O2B O N N 287 GTP O3A O N N 288 GTP PA P N N 289 GTP O1A O N N 290 GTP O2A O N N 291 GTP "O5'" O N N 292 GTP "C5'" C N N 293 GTP "C4'" C N R 294 GTP "O4'" O N N 295 GTP "C3'" C N S 296 GTP "O3'" O N N 297 GTP "C2'" C N R 298 GTP "O2'" O N N 299 GTP "C1'" C N R 300 GTP N9 N Y N 301 GTP C8 C Y N 302 GTP N7 N Y N 303 GTP C5 C Y N 304 GTP C6 C N N 305 GTP O6 O N N 306 GTP N1 N N N 307 GTP C2 C N N 308 GTP N2 N N N 309 GTP N3 N N N 310 GTP C4 C Y N 311 GTP HOG2 H N N 312 GTP HOG3 H N N 313 GTP HOB2 H N N 314 GTP HOA2 H N N 315 GTP "H5'" H N N 316 GTP "H5''" H N N 317 GTP "H4'" H N N 318 GTP "H3'" H N N 319 GTP "HO3'" H N N 320 GTP "H2'" H N N 321 GTP "HO2'" H N N 322 GTP "H1'" H N N 323 GTP H8 H N N 324 GTP HN1 H N N 325 GTP HN21 H N N 326 GTP HN22 H N N 327 HIS N N N N 328 HIS CA C N S 329 HIS C C N N 330 HIS O O N N 331 HIS CB C N N 332 HIS CG C Y N 333 HIS ND1 N Y N 334 HIS CD2 C Y N 335 HIS CE1 C Y N 336 HIS NE2 N Y N 337 HIS OXT O N N 338 HIS H H N N 339 HIS H2 H N N 340 HIS HA H N N 341 HIS HB2 H N N 342 HIS HB3 H N N 343 HIS HD1 H N N 344 HIS HD2 H N N 345 HIS HE1 H N N 346 HIS HE2 H N N 347 HIS HXT H N N 348 HOH O O N N 349 HOH H1 H N N 350 HOH H2 H N N 351 ILE N N N N 352 ILE CA C N S 353 ILE C C N N 354 ILE O O N N 355 ILE CB C N S 356 ILE CG1 C N N 357 ILE CG2 C N N 358 ILE CD1 C N N 359 ILE OXT O N N 360 ILE H H N N 361 ILE H2 H N N 362 ILE HA H N N 363 ILE HB H N N 364 ILE HG12 H N N 365 ILE HG13 H N N 366 ILE HG21 H N N 367 ILE HG22 H N N 368 ILE HG23 H N N 369 ILE HD11 H N N 370 ILE HD12 H N N 371 ILE HD13 H N N 372 ILE HXT H N N 373 LEU N N N N 374 LEU CA C N S 375 LEU C C N N 376 LEU O O N N 377 LEU CB C N N 378 LEU CG C N N 379 LEU CD1 C N N 380 LEU CD2 C N N 381 LEU OXT O N N 382 LEU H H N N 383 LEU H2 H N N 384 LEU HA H N N 385 LEU HB2 H N N 386 LEU HB3 H N N 387 LEU HG H N N 388 LEU HD11 H N N 389 LEU HD12 H N N 390 LEU HD13 H N N 391 LEU HD21 H N N 392 LEU HD22 H N N 393 LEU HD23 H N N 394 LEU HXT H N N 395 LYS N N N N 396 LYS CA C N S 397 LYS C C N N 398 LYS O O N N 399 LYS CB C N N 400 LYS CG C N N 401 LYS CD C N N 402 LYS CE C N N 403 LYS NZ N N N 404 LYS OXT O N N 405 LYS H H N N 406 LYS H2 H N N 407 LYS HA H N N 408 LYS HB2 H N N 409 LYS HB3 H N N 410 LYS HG2 H N N 411 LYS HG3 H N N 412 LYS HD2 H N N 413 LYS HD3 H N N 414 LYS HE2 H N N 415 LYS HE3 H N N 416 LYS HZ1 H N N 417 LYS HZ2 H N N 418 LYS HZ3 H N N 419 LYS HXT H N N 420 MET N N N N 421 MET CA C N S 422 MET C C N N 423 MET O O N N 424 MET CB C N N 425 MET CG C N N 426 MET SD S N N 427 MET CE C N N 428 MET OXT O N N 429 MET H H N N 430 MET H2 H N N 431 MET HA H N N 432 MET HB2 H N N 433 MET HB3 H N N 434 MET HG2 H N N 435 MET HG3 H N N 436 MET HE1 H N N 437 MET HE2 H N N 438 MET HE3 H N N 439 MET HXT H N N 440 MN MN MN N N 441 PHE N N N N 442 PHE CA C N S 443 PHE C C N N 444 PHE O O N N 445 PHE CB C N N 446 PHE CG C Y N 447 PHE CD1 C Y N 448 PHE CD2 C Y N 449 PHE CE1 C Y N 450 PHE CE2 C Y N 451 PHE CZ C Y N 452 PHE OXT O N N 453 PHE H H N N 454 PHE H2 H N N 455 PHE HA H N N 456 PHE HB2 H N N 457 PHE HB3 H N N 458 PHE HD1 H N N 459 PHE HD2 H N N 460 PHE HE1 H N N 461 PHE HE2 H N N 462 PHE HZ H N N 463 PHE HXT H N N 464 PRO N N N N 465 PRO CA C N S 466 PRO C C N N 467 PRO O O N N 468 PRO CB C N N 469 PRO CG C N N 470 PRO CD C N N 471 PRO OXT O N N 472 PRO H H N N 473 PRO HA H N N 474 PRO HB2 H N N 475 PRO HB3 H N N 476 PRO HG2 H N N 477 PRO HG3 H N N 478 PRO HD2 H N N 479 PRO HD3 H N N 480 PRO HXT H N N 481 SER N N N N 482 SER CA C N S 483 SER C C N N 484 SER O O N N 485 SER CB C N N 486 SER OG O N N 487 SER OXT O N N 488 SER H H N N 489 SER H2 H N N 490 SER HA H N N 491 SER HB2 H N N 492 SER HB3 H N N 493 SER HG H N N 494 SER HXT H N N 495 SO4 S S N N 496 SO4 O1 O N N 497 SO4 O2 O N N 498 SO4 O3 O N N 499 SO4 O4 O N N 500 THR N N N N 501 THR CA C N S 502 THR C C N N 503 THR O O N N 504 THR CB C N R 505 THR OG1 O N N 506 THR CG2 C N N 507 THR OXT O N N 508 THR H H N N 509 THR H2 H N N 510 THR HA H N N 511 THR HB H N N 512 THR HG1 H N N 513 THR HG21 H N N 514 THR HG22 H N N 515 THR HG23 H N N 516 THR HXT H N N 517 TRP N N N N 518 TRP CA C N S 519 TRP C C N N 520 TRP O O N N 521 TRP CB C N N 522 TRP CG C Y N 523 TRP CD1 C Y N 524 TRP CD2 C Y N 525 TRP NE1 N Y N 526 TRP CE2 C Y N 527 TRP CE3 C Y N 528 TRP CZ2 C Y N 529 TRP CZ3 C Y N 530 TRP CH2 C Y N 531 TRP OXT O N N 532 TRP H H N N 533 TRP H2 H N N 534 TRP HA H N N 535 TRP HB2 H N N 536 TRP HB3 H N N 537 TRP HD1 H N N 538 TRP HE1 H N N 539 TRP HE3 H N N 540 TRP HZ2 H N N 541 TRP HZ3 H N N 542 TRP HH2 H N N 543 TRP HXT H N N 544 TYR N N N N 545 TYR CA C N S 546 TYR C C N N 547 TYR O O N N 548 TYR CB C N N 549 TYR CG C Y N 550 TYR CD1 C Y N 551 TYR CD2 C Y N 552 TYR CE1 C Y N 553 TYR CE2 C Y N 554 TYR CZ C Y N 555 TYR OH O N N 556 TYR OXT O N N 557 TYR H H N N 558 TYR H2 H N N 559 TYR HA H N N 560 TYR HB2 H N N 561 TYR HB3 H N N 562 TYR HD1 H N N 563 TYR HD2 H N N 564 TYR HE1 H N N 565 TYR HE2 H N N 566 TYR HH H N N 567 TYR HXT H N N 568 VAL N N N N 569 VAL CA C N S 570 VAL C C N N 571 VAL O O N N 572 VAL CB C N N 573 VAL CG1 C N N 574 VAL CG2 C N N 575 VAL OXT O N N 576 VAL H H N N 577 VAL H2 H N N 578 VAL HA H N N 579 VAL HB H N N 580 VAL HG11 H N N 581 VAL HG12 H N N 582 VAL HG13 H N N 583 VAL HG21 H N N 584 VAL HG22 H N N 585 VAL HG23 H N N 586 VAL HXT H N N 587 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 GTP PG O1G doub N N 278 GTP PG O2G sing N N 279 GTP PG O3G sing N N 280 GTP PG O3B sing N N 281 GTP O2G HOG2 sing N N 282 GTP O3G HOG3 sing N N 283 GTP O3B PB sing N N 284 GTP PB O1B doub N N 285 GTP PB O2B sing N N 286 GTP PB O3A sing N N 287 GTP O2B HOB2 sing N N 288 GTP O3A PA sing N N 289 GTP PA O1A doub N N 290 GTP PA O2A sing N N 291 GTP PA "O5'" sing N N 292 GTP O2A HOA2 sing N N 293 GTP "O5'" "C5'" sing N N 294 GTP "C5'" "C4'" sing N N 295 GTP "C5'" "H5'" sing N N 296 GTP "C5'" "H5''" sing N N 297 GTP "C4'" "O4'" sing N N 298 GTP "C4'" "C3'" sing N N 299 GTP "C4'" "H4'" sing N N 300 GTP "O4'" "C1'" sing N N 301 GTP "C3'" "O3'" sing N N 302 GTP "C3'" "C2'" sing N N 303 GTP "C3'" "H3'" sing N N 304 GTP "O3'" "HO3'" sing N N 305 GTP "C2'" "O2'" sing N N 306 GTP "C2'" "C1'" sing N N 307 GTP "C2'" "H2'" sing N N 308 GTP "O2'" "HO2'" sing N N 309 GTP "C1'" N9 sing N N 310 GTP "C1'" "H1'" sing N N 311 GTP N9 C8 sing Y N 312 GTP N9 C4 sing Y N 313 GTP C8 N7 doub Y N 314 GTP C8 H8 sing N N 315 GTP N7 C5 sing Y N 316 GTP C5 C6 sing N N 317 GTP C5 C4 doub Y N 318 GTP C6 O6 doub N N 319 GTP C6 N1 sing N N 320 GTP N1 C2 sing N N 321 GTP N1 HN1 sing N N 322 GTP C2 N2 sing N N 323 GTP C2 N3 doub N N 324 GTP N2 HN21 sing N N 325 GTP N2 HN22 sing N N 326 GTP N3 C4 sing N N 327 HIS N CA sing N N 328 HIS N H sing N N 329 HIS N H2 sing N N 330 HIS CA C sing N N 331 HIS CA CB sing N N 332 HIS CA HA sing N N 333 HIS C O doub N N 334 HIS C OXT sing N N 335 HIS CB CG sing N N 336 HIS CB HB2 sing N N 337 HIS CB HB3 sing N N 338 HIS CG ND1 sing Y N 339 HIS CG CD2 doub Y N 340 HIS ND1 CE1 doub Y N 341 HIS ND1 HD1 sing N N 342 HIS CD2 NE2 sing Y N 343 HIS CD2 HD2 sing N N 344 HIS CE1 NE2 sing Y N 345 HIS CE1 HE1 sing N N 346 HIS NE2 HE2 sing N N 347 HIS OXT HXT sing N N 348 HOH O H1 sing N N 349 HOH O H2 sing N N 350 ILE N CA sing N N 351 ILE N H sing N N 352 ILE N H2 sing N N 353 ILE CA C sing N N 354 ILE CA CB sing N N 355 ILE CA HA sing N N 356 ILE C O doub N N 357 ILE C OXT sing N N 358 ILE CB CG1 sing N N 359 ILE CB CG2 sing N N 360 ILE CB HB sing N N 361 ILE CG1 CD1 sing N N 362 ILE CG1 HG12 sing N N 363 ILE CG1 HG13 sing N N 364 ILE CG2 HG21 sing N N 365 ILE CG2 HG22 sing N N 366 ILE CG2 HG23 sing N N 367 ILE CD1 HD11 sing N N 368 ILE CD1 HD12 sing N N 369 ILE CD1 HD13 sing N N 370 ILE OXT HXT sing N N 371 LEU N CA sing N N 372 LEU N H sing N N 373 LEU N H2 sing N N 374 LEU CA C sing N N 375 LEU CA CB sing N N 376 LEU CA HA sing N N 377 LEU C O doub N N 378 LEU C OXT sing N N 379 LEU CB CG sing N N 380 LEU CB HB2 sing N N 381 LEU CB HB3 sing N N 382 LEU CG CD1 sing N N 383 LEU CG CD2 sing N N 384 LEU CG HG sing N N 385 LEU CD1 HD11 sing N N 386 LEU CD1 HD12 sing N N 387 LEU CD1 HD13 sing N N 388 LEU CD2 HD21 sing N N 389 LEU CD2 HD22 sing N N 390 LEU CD2 HD23 sing N N 391 LEU OXT HXT sing N N 392 LYS N CA sing N N 393 LYS N H sing N N 394 LYS N H2 sing N N 395 LYS CA C sing N N 396 LYS CA CB sing N N 397 LYS CA HA sing N N 398 LYS C O doub N N 399 LYS C OXT sing N N 400 LYS CB CG sing N N 401 LYS CB HB2 sing N N 402 LYS CB HB3 sing N N 403 LYS CG CD sing N N 404 LYS CG HG2 sing N N 405 LYS CG HG3 sing N N 406 LYS CD CE sing N N 407 LYS CD HD2 sing N N 408 LYS CD HD3 sing N N 409 LYS CE NZ sing N N 410 LYS CE HE2 sing N N 411 LYS CE HE3 sing N N 412 LYS NZ HZ1 sing N N 413 LYS NZ HZ2 sing N N 414 LYS NZ HZ3 sing N N 415 LYS OXT HXT sing N N 416 MET N CA sing N N 417 MET N H sing N N 418 MET N H2 sing N N 419 MET CA C sing N N 420 MET CA CB sing N N 421 MET CA HA sing N N 422 MET C O doub N N 423 MET C OXT sing N N 424 MET CB CG sing N N 425 MET CB HB2 sing N N 426 MET CB HB3 sing N N 427 MET CG SD sing N N 428 MET CG HG2 sing N N 429 MET CG HG3 sing N N 430 MET SD CE sing N N 431 MET CE HE1 sing N N 432 MET CE HE2 sing N N 433 MET CE HE3 sing N N 434 MET OXT HXT sing N N 435 PHE N CA sing N N 436 PHE N H sing N N 437 PHE N H2 sing N N 438 PHE CA C sing N N 439 PHE CA CB sing N N 440 PHE CA HA sing N N 441 PHE C O doub N N 442 PHE C OXT sing N N 443 PHE CB CG sing N N 444 PHE CB HB2 sing N N 445 PHE CB HB3 sing N N 446 PHE CG CD1 doub Y N 447 PHE CG CD2 sing Y N 448 PHE CD1 CE1 sing Y N 449 PHE CD1 HD1 sing N N 450 PHE CD2 CE2 doub Y N 451 PHE CD2 HD2 sing N N 452 PHE CE1 CZ doub Y N 453 PHE CE1 HE1 sing N N 454 PHE CE2 CZ sing Y N 455 PHE CE2 HE2 sing N N 456 PHE CZ HZ sing N N 457 PHE OXT HXT sing N N 458 PRO N CA sing N N 459 PRO N CD sing N N 460 PRO N H sing N N 461 PRO CA C sing N N 462 PRO CA CB sing N N 463 PRO CA HA sing N N 464 PRO C O doub N N 465 PRO C OXT sing N N 466 PRO CB CG sing N N 467 PRO CB HB2 sing N N 468 PRO CB HB3 sing N N 469 PRO CG CD sing N N 470 PRO CG HG2 sing N N 471 PRO CG HG3 sing N N 472 PRO CD HD2 sing N N 473 PRO CD HD3 sing N N 474 PRO OXT HXT sing N N 475 SER N CA sing N N 476 SER N H sing N N 477 SER N H2 sing N N 478 SER CA C sing N N 479 SER CA CB sing N N 480 SER CA HA sing N N 481 SER C O doub N N 482 SER C OXT sing N N 483 SER CB OG sing N N 484 SER CB HB2 sing N N 485 SER CB HB3 sing N N 486 SER OG HG sing N N 487 SER OXT HXT sing N N 488 SO4 S O1 doub N N 489 SO4 S O2 doub N N 490 SO4 S O3 sing N N 491 SO4 S O4 sing N N 492 THR N CA sing N N 493 THR N H sing N N 494 THR N H2 sing N N 495 THR CA C sing N N 496 THR CA CB sing N N 497 THR CA HA sing N N 498 THR C O doub N N 499 THR C OXT sing N N 500 THR CB OG1 sing N N 501 THR CB CG2 sing N N 502 THR CB HB sing N N 503 THR OG1 HG1 sing N N 504 THR CG2 HG21 sing N N 505 THR CG2 HG22 sing N N 506 THR CG2 HG23 sing N N 507 THR OXT HXT sing N N 508 TRP N CA sing N N 509 TRP N H sing N N 510 TRP N H2 sing N N 511 TRP CA C sing N N 512 TRP CA CB sing N N 513 TRP CA HA sing N N 514 TRP C O doub N N 515 TRP C OXT sing N N 516 TRP CB CG sing N N 517 TRP CB HB2 sing N N 518 TRP CB HB3 sing N N 519 TRP CG CD1 doub Y N 520 TRP CG CD2 sing Y N 521 TRP CD1 NE1 sing Y N 522 TRP CD1 HD1 sing N N 523 TRP CD2 CE2 doub Y N 524 TRP CD2 CE3 sing Y N 525 TRP NE1 CE2 sing Y N 526 TRP NE1 HE1 sing N N 527 TRP CE2 CZ2 sing Y N 528 TRP CE3 CZ3 doub Y N 529 TRP CE3 HE3 sing N N 530 TRP CZ2 CH2 doub Y N 531 TRP CZ2 HZ2 sing N N 532 TRP CZ3 CH2 sing Y N 533 TRP CZ3 HZ3 sing N N 534 TRP CH2 HH2 sing N N 535 TRP OXT HXT sing N N 536 TYR N CA sing N N 537 TYR N H sing N N 538 TYR N H2 sing N N 539 TYR CA C sing N N 540 TYR CA CB sing N N 541 TYR CA HA sing N N 542 TYR C O doub N N 543 TYR C OXT sing N N 544 TYR CB CG sing N N 545 TYR CB HB2 sing N N 546 TYR CB HB3 sing N N 547 TYR CG CD1 doub Y N 548 TYR CG CD2 sing Y N 549 TYR CD1 CE1 sing Y N 550 TYR CD1 HD1 sing N N 551 TYR CD2 CE2 doub Y N 552 TYR CD2 HD2 sing N N 553 TYR CE1 CZ doub Y N 554 TYR CE1 HE1 sing N N 555 TYR CE2 CZ sing Y N 556 TYR CE2 HE2 sing N N 557 TYR CZ OH sing N N 558 TYR OH HH sing N N 559 TYR OXT HXT sing N N 560 VAL N CA sing N N 561 VAL N H sing N N 562 VAL N H2 sing N N 563 VAL CA C sing N N 564 VAL CA CB sing N N 565 VAL CA HA sing N N 566 VAL C O doub N N 567 VAL C OXT sing N N 568 VAL CB CG1 sing N N 569 VAL CB CG2 sing N N 570 VAL CB HB sing N N 571 VAL CG1 HG11 sing N N 572 VAL CG1 HG12 sing N N 573 VAL CG1 HG13 sing N N 574 VAL CG2 HG21 sing N N 575 VAL CG2 HG22 sing N N 576 VAL CG2 HG23 sing N N 577 VAL OXT HXT sing N N 578 # _ndb_struct_conf_na.entry_id 8ILD _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 2 1_555 D DT 9 1_555 0.014 -0.144 -0.100 3.745 -6.932 4.293 1 C_DA2:DT9_D C 2 ? D 9 ? 20 1 1 C DG 3 1_555 D DC 8 1_555 -0.229 0.023 0.060 4.333 -12.135 2.745 2 C_DG3:DC8_D C 3 ? D 8 ? 19 1 1 C DG 4 1_555 D DC 7 1_555 -0.250 -0.050 -0.333 -6.771 -7.237 -1.182 3 C_DG4:DC7_D C 4 ? D 7 ? 19 1 1 C DA 5 1_555 D DT 6 1_555 -0.122 -0.051 -0.098 -1.134 -11.543 1.116 4 C_DA5:DT6_D C 5 ? D 6 ? 20 1 1 C DT 6 1_555 D DA 5 1_555 0.103 -0.132 -0.356 4.177 -11.785 2.887 5 C_DT6:DA5_D C 6 ? D 5 ? 20 1 1 C DC 7 1_555 D DG 4 1_555 0.361 0.023 -0.419 9.539 -8.173 1.816 6 C_DC7:DG4_D C 7 ? D 4 ? 19 1 1 C DC 8 1_555 D DG 3 1_555 -0.027 -0.051 0.096 -3.296 -12.198 2.096 7 C_DC8:DG3_D C 8 ? D 3 ? 19 1 1 C DT 9 1_555 D DA 2 1_555 0.222 -0.119 -0.112 0.670 -3.833 4.904 8 C_DT9:DA2_D C 9 ? D 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 2 1_555 D DT 9 1_555 C DG 3 1_555 D DC 8 1_555 0.454 -0.843 3.372 -1.870 5.763 32.490 -2.464 -1.117 3.150 10.189 3.307 33.035 1 CC_DA2DG3:DC8DT9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DG 3 1_555 D DC 8 1_555 C DG 4 1_555 D DC 7 1_555 -1.570 -0.746 3.405 -0.404 3.187 33.983 -1.793 2.609 3.341 5.438 0.689 34.130 2 CC_DG3DG4:DC7DC8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DG 4 1_555 D DC 7 1_555 C DA 5 1_555 D DT 6 1_555 -0.917 0.472 3.205 -4.599 5.980 32.558 -0.182 0.824 3.331 10.491 8.069 33.397 3 CC_DG4DA5:DT6DC7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C DA 5 1_555 D DT 6 1_555 C DT 6 1_555 D DA 5 1_555 0.097 -0.215 3.142 1.557 3.056 31.174 -0.949 0.101 3.108 5.665 -2.887 31.357 4 CC_DA5DT6:DA5DT6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DT 6 1_555 D DA 5 1_555 C DC 7 1_555 D DG 4 1_555 0.972 0.521 3.189 4.416 5.800 33.391 -0.038 -0.950 3.328 9.948 -7.573 34.156 5 CC_DT6DC7:DG4DA5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C DC 7 1_555 D DG 4 1_555 C DC 8 1_555 D DG 3 1_555 1.414 -0.856 3.459 -0.971 6.140 31.604 -2.669 -2.729 3.196 11.139 1.762 32.194 6 CC_DC7DC8:DG3DG4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C DC 8 1_555 D DG 3 1_555 C DT 9 1_555 D DA 2 1_555 -0.674 -1.021 3.351 0.587 2.834 33.724 -2.215 1.254 3.245 4.874 -1.009 33.844 7 CC_DC8DT9:DA2DG3_DD C 8 ? D 3 ? C 9 ? D 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (MoST, China)' China 2022YFC2303700 1 'National Natural Science Foundation of China (NSFC)' China 22077089 2 'National Natural Science Foundation of China (NSFC)' China 22107079 3 'Ministry of Education (MoE, China)' China 2020M673205 4 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GTP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GTP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5HRB _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8ILD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017034 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013255 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009221 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MN N O P S # loop_