HEADER REPLICATION/DNA 03-MAR-23 8ILF TITLE THE CRYSTAL STRUCTURE OF DGTPALPHASE-SP:DNAPRE-II:POL X SUBSTRATE TITLE 2 TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPAIR DNA POLYMERASE X; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL X,ASFVPOLX; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*TP*GP*GP*AP*TP*CP*CP*A)-3'); COMPND 9 CHAIN: E, G, H, J; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS (STRAIN BADAJOZ 1971 SOURCE 3 VERO-ADAPTED); SOURCE 4 ORGANISM_COMMON: BA71V, ASFV; SOURCE 5 ORGANISM_TAXID: 10498; SOURCE 6 GENE: BA71V-97, O174L; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, SUBSTRATE COMPLEX, DNTPALPHASE, CONFIGURATION, KEYWDS 2 REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.QIN,Q.W.ZHAO,J.H.GAN,Z.HUANG REVDAT 1 17-JAN-24 8ILF 0 JRNL AUTH T.QIN,B.HU,Q.ZHAO,Y.WANG,S.WANG,D.LUO,J.LYU,Y.CHEN,J.GAN, JRNL AUTH 2 Z.HUANG JRNL TITL STRUCTURAL INSIGHT INTO POLYMERASE MECHANISM VIA A CHIRAL JRNL TITL 2 CENTER GENERATED WITH A SINGLE SELENIUM ATOM. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37958741 JRNL DOI 10.3390/IJMS242115758 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2840 REMARK 3 NUCLEIC ACID ATOMS : 717 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3758 ; 0.008 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3417 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5221 ; 1.385 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7859 ; 1.014 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.730 ;22.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;14.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3564 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 828 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 1.607 ; 2.997 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1413 ; 1.605 ; 2.995 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 2.722 ; 4.487 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1765 ; 2.721 ; 4.489 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2344 ; 1.720 ; 3.315 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2345 ; 1.720 ; 3.316 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3458 ; 2.899 ; 4.917 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4192 ; 4.430 ;25.840 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4193 ; 4.430 ;25.844 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8ILF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE (0.2 M), BIS-TRIS PH REMARK 280 5.5 (0.1 M), 20% PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.83300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.65200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.65200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.83300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, G, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CD1 REMARK 470 LYS A 9 CD CE NZ REMARK 470 LYS A 59 NZ REMARK 470 LYS A 79 CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 95 CE NZ REMARK 470 LYS A 133 CD CE NZ REMARK 470 LYS A 144 NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 ILE B 5 CD1 REMARK 470 LYS B 9 CD CE NZ REMARK 470 ASN B 12 CG OD1 ND2 REMARK 470 LYS B 59 NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 95 CE NZ REMARK 470 LYS B 144 NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 DA E 8 O3' REMARK 470 DA G 10 O3' REMARK 470 DA H 9 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 93 74.20 43.58 REMARK 500 GLN A 146 19.00 56.98 REMARK 500 VAL B 37 -163.64 -128.20 REMARK 500 LYS B 79 -73.38 -84.45 REMARK 500 THR B 154 -50.37 -128.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 51 OD2 90.8 REMARK 620 3 7Q6 A 202 O3G 91.2 166.8 REMARK 620 4 7Q6 A 202 O2B 169.6 88.1 87.6 REMARK 620 5 7Q6 A 202 O1A 101.4 106.1 86.2 88.9 REMARK 620 6 HOH A 303 O 85.3 78.3 89.0 84.4 171.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 49 OD1 REMARK 620 2 ASP B 51 OD2 96.7 REMARK 620 3 7Q6 B 202 O2B 172.3 86.4 REMARK 620 4 7Q6 B 202 O3G 90.9 169.0 85.2 REMARK 620 5 7Q6 B 202 O1A 101.1 99.1 85.3 87.2 REMARK 620 6 HOH B 301 O 88.9 85.7 84.3 86.6 168.3 REMARK 620 N 1 2 3 4 5 DBREF 8ILF A 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8ILF B 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8ILF E 0 8 PDB 8ILF 8ILF 0 8 DBREF 8ILF G 2 10 PDB 8ILF 8ILF 2 10 DBREF 8ILF H 1 9 PDB 8ILF 8ILF 1 9 DBREF 8ILF J -1 7 PDB 8ILF 8ILF -1 7 SEQADV 8ILF GLY A -3 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY A -2 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY A -1 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY A 0 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY B -3 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY B -2 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY B -1 UNP P42494 EXPRESSION TAG SEQADV 8ILF GLY B 0 UNP P42494 EXPRESSION TAG SEQRES 1 A 178 GLY GLY GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS SEQRES 2 A 178 ILE VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR SEQRES 3 A 178 ASN GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL SEQRES 4 A 178 ALA VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN SEQRES 5 A 178 ASP VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU SEQRES 6 A 178 LEU LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SEQRES 7 A 178 SER PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL SEQRES 8 A 178 LEU PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP SEQRES 9 A 178 LEU PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE SEQRES 10 A 178 PHE HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE SEQRES 11 A 178 ARG ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN SEQRES 12 A 178 TYR GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS SEQRES 13 A 178 ILE THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE SEQRES 14 A 178 THR TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 B 178 GLY GLY GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS SEQRES 2 B 178 ILE VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR SEQRES 3 B 178 ASN GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL SEQRES 4 B 178 ALA VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN SEQRES 5 B 178 ASP VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU SEQRES 6 B 178 LEU LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SEQRES 7 B 178 SER PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL SEQRES 8 B 178 LEU PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP SEQRES 9 B 178 LEU PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE SEQRES 10 B 178 PHE HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE SEQRES 11 B 178 ARG ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN SEQRES 12 B 178 TYR GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS SEQRES 13 B 178 ILE THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE SEQRES 14 B 178 THR TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 E 9 DC DT DG DG DA DT DC DC DA SEQRES 1 G 9 DC DT DG DG DA DT DC DC DA SEQRES 1 H 9 DC DT DG DG DA DT DC DC DA SEQRES 1 J 9 DC DT DG DG DA DT DC DC DA HET MN A 201 1 HET 7Q6 A 202 31 HET MN B 201 1 HET 7Q6 B 202 31 HETNAM MN MANGANESE (II) ION HETNAM 7Q6 [[(2R,3S,5R)-5-(2-AZANYL-6-OXIDANYLIDENE-1H-PURIN-9- HETNAM 2 7Q6 YL)-3-OXIDANYL-OXOLAN-2-YL]METHOXY-SELANYL-PHOSPHORYL] HETNAM 3 7Q6 PHOSPHONO HYDROGEN PHOSPHATE FORMUL 7 MN 2(MN 2+) FORMUL 8 7Q6 2(C10 H16 N5 O12 P3 SE) FORMUL 11 HOH *70(H2 O) HELIX 1 AA1 LEU A 4 SER A 16 1 13 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 VAL A 37 ARG A 42 1 6 HELIX 4 AA4 GLU A 58 LYS A 60 5 3 HELIX 5 AA5 LEU A 61 LEU A 66 1 6 HELIX 6 AA6 GLU A 108 GLY A 118 1 11 HELIX 7 AA7 PRO A 119 LYS A 132 1 14 HELIX 8 AA8 THR A 155 GLY A 164 1 10 HELIX 9 AA9 ILE A 169 ARG A 173 5 5 HELIX 10 AB1 LEU B 4 ARG B 15 1 12 HELIX 11 AB2 LEU B 30 LYS B 32 5 3 HELIX 12 AB3 VAL B 37 ARG B 42 1 6 HELIX 13 AB4 GLU B 58 HIS B 64 5 7 HELIX 14 AB5 GLU B 108 GLY B 118 1 11 HELIX 15 AB6 PRO B 119 LYS B 132 1 14 HELIX 16 AB7 THR B 155 LEU B 163 1 9 HELIX 17 AB8 ILE B 169 ARG B 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 LEU A 26 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 GLU A 21 -1 N PHE A 20 O ILE A 27 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 ALA A 36 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 LYS A 95 LEU A 105 1 O PHE A 102 N ILE A 54 SHEET 4 AA3 5 LYS A 85 TRP A 92 -1 N LEU A 88 O LEU A 99 SHEET 5 AA3 5 PHE A 76 CYS A 81 -1 N SER A 77 O PHE A 89 SHEET 1 AA4 3 TYR A 135 LEU A 137 0 SHEET 2 AA4 3 LEU A 142 LYS A 144 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 THR A 147 LEU A 148 -1 O THR A 147 N LYS A 144 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 GLN B 25 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 TYR B 22 -1 N TYR B 22 O GLN B 25 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 ALA B 36 0 SHEET 2 AA7 5 VAL B 50 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 LYS B 95 LEU B 105 1 O ASP B 100 N VAL B 50 SHEET 4 AA7 5 LYS B 85 TRP B 92 -1 N LEU B 88 O LEU B 99 SHEET 5 AA7 5 PHE B 76 CYS B 81 -1 N VAL B 80 O VAL B 87 SHEET 1 AA8 3 LYS B 136 ASN B 138 0 SHEET 2 AA8 3 GLY B 141 LYS B 144 -1 O PHE B 143 N LYS B 136 SHEET 3 AA8 3 THR B 147 LEU B 148 -1 O THR B 147 N LYS B 144 SSBOND 1 CYS A 81 CYS A 86 1555 1555 2.25 LINK OD1 ASP A 49 MN MN A 201 1555 1555 2.08 LINK OD2 ASP A 51 MN MN A 201 1555 1555 2.13 LINK MN MN A 201 O3G 7Q6 A 202 1555 1555 2.03 LINK MN MN A 201 O2B 7Q6 A 202 1555 1555 2.16 LINK MN MN A 201 O1A 7Q6 A 202 1555 1555 2.09 LINK MN MN A 201 O HOH A 303 1555 1555 2.25 LINK OD1 ASP B 49 MN MN B 201 1555 1555 2.07 LINK OD2 ASP B 51 MN MN B 201 1555 1555 2.05 LINK MN MN B 201 O2B 7Q6 B 202 1555 1555 2.16 LINK MN MN B 201 O3G 7Q6 B 202 1555 1555 1.94 LINK MN MN B 201 O1A 7Q6 B 202 1555 1555 2.24 LINK MN MN B 201 O HOH B 301 1555 1555 2.33 CISPEP 1 GLY A 118 PRO A 119 0 -5.50 CISPEP 2 GLY B 118 PRO B 119 0 -9.11 CRYST1 59.666 78.190 101.304 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009871 0.00000