HEADER REPLICATION/DNA 03-MAR-23 8ILG TITLE THE CRYSTAL STRUCTURE OF DG-DNA:POL X PRODUCT BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPAIR DNA POLYMERASE X; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL X,ASFVPOLX; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*GP*GP*AP*TP*CP*CP*G)-3'); COMPND 9 CHAIN: D, E, C, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS (STRAIN BADAJOZ 1971 SOURCE 3 VERO-ADAPTED); SOURCE 4 ORGANISM_COMMON: BA71V, ASFV; SOURCE 5 ORGANISM_TAXID: 10498; SOURCE 6 GENE: BA71V-97, O174L; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, SUBSTRATE COMPLEX, SELENIUM-MODIFIED DNTP, KEYWDS 2 CONFIGURATION, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.QIN,J.H.GAN,Z.HUANG REVDAT 1 17-JAN-24 8ILG 0 JRNL AUTH T.QIN,B.HU,Q.ZHAO,Y.WANG,S.WANG,D.LUO,J.LYU,Y.CHEN,J.GAN, JRNL AUTH 2 Z.HUANG JRNL TITL STRUCTURAL INSIGHT INTO POLYMERASE MECHANISM VIA A CHIRAL JRNL TITL 2 CENTER GENERATED WITH A SINGLE SELENIUM ATOM. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37958741 JRNL DOI 10.3390/IJMS242115758 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 47365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8600 - 4.6345 0.99 2883 145 0.2150 0.2657 REMARK 3 2 4.6345 - 3.6810 1.00 2792 147 0.1901 0.1998 REMARK 3 3 3.6810 - 3.2164 0.99 2707 156 0.2114 0.2392 REMARK 3 4 3.2164 - 2.9226 0.99 2723 149 0.2222 0.2612 REMARK 3 5 2.9226 - 2.7133 0.99 2694 146 0.2303 0.2439 REMARK 3 6 2.7133 - 2.5534 0.99 2699 125 0.2252 0.2922 REMARK 3 7 2.5534 - 2.4256 0.99 2680 137 0.2122 0.2617 REMARK 3 8 2.4256 - 2.3201 0.99 2629 160 0.2151 0.2643 REMARK 3 9 2.3201 - 2.2308 0.98 2661 144 0.2139 0.2394 REMARK 3 10 2.2308 - 2.1538 0.97 2577 159 0.2152 0.2835 REMARK 3 11 2.1538 - 2.0865 0.97 2643 128 0.2147 0.2627 REMARK 3 12 2.0865 - 2.0269 0.97 2586 146 0.2390 0.2641 REMARK 3 13 2.0269 - 1.9735 0.96 2573 149 0.2396 0.2925 REMARK 3 14 1.9735 - 1.9254 0.95 2553 137 0.2602 0.2388 REMARK 3 15 1.9254 - 1.8816 0.96 2596 120 0.2813 0.3299 REMARK 3 16 1.8816 - 1.8416 0.95 2515 150 0.2945 0.3537 REMARK 3 17 1.8416 - 1.8050 0.90 2426 130 0.3029 0.3111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3601 REMARK 3 ANGLE : 0.960 4982 REMARK 3 CHIRALITY : 0.059 580 REMARK 3 PLANARITY : 0.006 505 REMARK 3 DIHEDRAL : 17.699 2072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 87.1167 30.2348 115.6841 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.1761 REMARK 3 T33: 0.1145 T12: 0.0061 REMARK 3 T13: -0.0128 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.7783 L22: 0.4518 REMARK 3 L33: 0.1544 L12: 0.1393 REMARK 3 L13: 0.1113 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0376 S13: 0.0781 REMARK 3 S21: 0.0202 S22: 0.0194 S23: 0.0023 REMARK 3 S31: -0.0198 S32: 0.0363 S33: 0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ILG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM FORMATE (0.2 M), 16% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.51650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.29700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.29700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.51650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A -2 N CA CB REMARK 470 ILE A 5 CD1 REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 59 NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 95 CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ILE B 5 CD1 REMARK 470 LYS B 9 CD CE NZ REMARK 470 ASN B 12 CG OD1 ND2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 95 CE NZ REMARK 470 LYS B 144 NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 363 O HOH A 443 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG F 2 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG F 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 37 -158.49 -135.19 REMARK 500 VAL A 65 -71.56 -70.60 REMARK 500 VAL B 37 -158.72 -134.30 REMARK 500 VAL B 65 -72.35 -71.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 507 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 505 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B 507 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 508 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH B 509 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B 510 DISTANCE = 8.60 ANGSTROMS REMARK 525 HOH B 511 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH B 512 DISTANCE = 10.93 ANGSTROMS REMARK 525 HOH B 513 DISTANCE = 11.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 51 OD2 95.1 REMARK 620 3 FMT A 202 O1 161.7 84.7 REMARK 620 4 HOH A 328 O 78.6 74.6 83.7 REMARK 620 5 HOH A 351 O 87.6 171.3 90.2 97.8 REMARK 620 6 DG D 8 OP1 94.6 93.4 103.7 165.5 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 49 OD1 REMARK 620 2 ASP B 51 OD2 90.2 REMARK 620 3 FMT B 202 O1 171.3 87.4 REMARK 620 4 HOH B 328 O 83.6 71.6 87.7 REMARK 620 5 HOH B 337 O 95.9 169.5 85.2 100.6 REMARK 620 6 DG C 8 OP1 93.3 94.5 95.3 165.7 93.5 REMARK 620 N 1 2 3 4 5 DBREF 8ILG A 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8ILG D 1 8 PDB 8ILG 8ILG 1 8 DBREF 8ILG E 1 8 PDB 8ILG 8ILG 1 8 DBREF 8ILG B 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8ILG C 1 8 PDB 8ILG 8ILG 1 8 DBREF 8ILG F 1 8 PDB 8ILG 8ILG 1 8 SEQADV 8ILG ALA A -2 UNP P42494 EXPRESSION TAG SEQADV 8ILG GLY A -1 UNP P42494 EXPRESSION TAG SEQADV 8ILG GLY A 0 UNP P42494 EXPRESSION TAG SEQADV 8ILG ALA B -2 UNP P42494 EXPRESSION TAG SEQADV 8ILG GLY B -1 UNP P42494 EXPRESSION TAG SEQADV 8ILG GLY B 0 UNP P42494 EXPRESSION TAG SEQRES 1 A 177 ALA GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 A 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 A 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 A 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 A 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 A 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 A 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 A 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 A 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 A 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 A 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 A 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 A 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 A 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 D 8 DC DG DG DA DT DC DC DG SEQRES 1 E 8 DC DG DG DA DT DC DC DG SEQRES 1 B 177 ALA GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 B 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 B 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 B 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 B 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 B 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 B 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 B 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 B 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 B 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 B 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 B 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 B 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 B 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 C 8 DC DG DG DA DT DC DC DG SEQRES 1 F 8 DC DG DG DA DT DC DC DG HET MN A 201 1 HET FMT A 202 3 HET MN B 201 1 HET FMT B 202 3 HETNAM MN MANGANESE (II) ION HETNAM FMT FORMIC ACID FORMUL 7 MN 2(MN 2+) FORMUL 8 FMT 2(C H2 O2) FORMUL 11 HOH *537(H2 O) HELIX 1 AA1 LEU A 4 ARG A 15 1 12 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 VAL A 37 ARG A 42 1 6 HELIX 4 AA4 GLU A 58 LEU A 62 5 5 HELIX 5 AA5 VAL A 65 PRO A 67 5 3 HELIX 6 AA6 GLU A 108 GLY A 118 1 11 HELIX 7 AA7 PRO A 119 LYS A 132 1 14 HELIX 8 AA8 THR A 155 LEU A 163 1 9 HELIX 9 AA9 ILE A 169 ARG A 173 5 5 HELIX 10 AB1 LEU B 4 ARG B 15 1 12 HELIX 11 AB2 LEU B 30 LYS B 32 5 3 HELIX 12 AB3 VAL B 37 ARG B 42 1 6 HELIX 13 AB4 GLU B 58 LEU B 62 5 5 HELIX 14 AB5 VAL B 65 PRO B 67 5 3 HELIX 15 AB6 GLU B 108 GLY B 118 1 11 HELIX 16 AB7 PRO B 119 LYS B 133 1 15 HELIX 17 AB8 THR B 155 LEU B 163 1 9 HELIX 18 AB9 ILE B 169 ARG B 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 GLN A 25 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 TYR A 22 -1 N TYR A 22 O GLN A 25 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 ALA A 36 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 LYS A 95 LEU A 105 1 O PHE A 102 N ILE A 54 SHEET 4 AA3 5 LYS A 85 TRP A 92 -1 N LEU A 88 O LEU A 99 SHEET 5 AA3 5 PHE A 76 CYS A 81 -1 N LYS A 79 O VAL A 87 SHEET 1 AA4 3 LYS A 136 ASN A 138 0 SHEET 2 AA4 3 GLY A 141 LYS A 144 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 THR A 147 LEU A 148 -1 O THR A 147 N LYS A 144 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 GLN B 25 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 TYR B 22 -1 N TYR B 22 O GLN B 25 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 ALA B 36 0 SHEET 2 AA7 5 VAL B 50 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 LYS B 95 LEU B 105 1 O PHE B 102 N ILE B 54 SHEET 4 AA7 5 LYS B 85 TRP B 92 -1 N CYS B 86 O LEU B 101 SHEET 5 AA7 5 PHE B 76 CYS B 81 -1 N LYS B 79 O VAL B 87 SHEET 1 AA8 3 LYS B 136 ASN B 138 0 SHEET 2 AA8 3 GLY B 141 LYS B 144 -1 O PHE B 143 N LYS B 136 SHEET 3 AA8 3 THR B 147 LEU B 148 -1 O THR B 147 N LYS B 144 SSBOND 1 CYS A 81 CYS A 86 1555 1555 2.10 SSBOND 2 CYS B 81 CYS B 86 1555 1555 2.09 LINK OD1 ASP A 49 MN MN A 201 1555 1555 2.17 LINK OD2 ASP A 51 MN MN A 201 1555 1555 2.12 LINK MN MN A 201 O1 FMT A 202 1555 1555 2.17 LINK MN MN A 201 O HOH A 328 1555 1555 2.32 LINK MN MN A 201 O HOH A 351 1555 1555 2.24 LINK MN MN A 201 OP1 DG D 8 1555 1555 2.08 LINK OD1 ASP B 49 MN MN B 201 1555 1555 2.25 LINK OD2 ASP B 51 MN MN B 201 1555 1555 2.05 LINK MN MN B 201 O1 FMT B 202 1555 1555 2.22 LINK MN MN B 201 O HOH B 328 1555 1555 2.43 LINK MN MN B 201 O HOH B 337 1555 1555 2.06 LINK MN MN B 201 OP1 DG C 8 1555 1555 2.20 CISPEP 1 GLY A 118 PRO A 119 0 -4.64 CISPEP 2 GLY B 118 PRO B 119 0 -4.20 CRYST1 69.033 81.422 92.594 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010800 0.00000