HEADER IMMUNE SYSTEM 06-MAR-23 8IM5 TITLE SOLUTION STRUCTURE OF THE MOUSE HOIL1-L NZF DOMAIN IN THE FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEME-OXIDIZED IRP2 UBIQUITIN LIGASE 1 HOMOLOG,HOIL-1,RING- COMPND 5 TYPE E3 UBIQUITIN TRANSFERASE HOIL-1,UBCM4-INTERACTING PROTEIN 28, COMPND 6 UBIQUITIN-CONJUGATING ENZYME 7-INTERACTING PROTEIN 3; COMPND 7 EC: 2.3.2.31; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: ZN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RBCK1, RBCK, UBCE7IP3, UIP28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS UBIQUITIN-BINDING, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR E.WALINDA,D.MORIMOTO REVDAT 4 15-MAY-24 8IM5 1 REMARK REVDAT 3 27-SEP-23 8IM5 1 JRNL REVDAT 2 06-SEP-23 8IM5 1 JRNL REVDAT 1 30-AUG-23 8IM5 0 JRNL AUTH E.WALINDA,K.SUGASE,N.ISHII,M.SHIRAKAWA,K.IWAI,D.MORIMOTO JRNL TITL SOLUTION STRUCTURE OF THE HOIL-1L NZF DOMAIN REVEALS A JRNL TITL 2 CONFORMATIONAL SWITCH REGULATING LINEAR UBIQUITIN AFFINITY. JRNL REF J.BIOL.CHEM. V. 299 05165 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37595872 JRNL DOI 10.1016/J.JBC.2023.105165 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : PETER GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300031494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 70; 70; 40 REMARK 210 PRESSURE : 1013.2 MBAR; 1013.2 MBAR; 1013.2 REMARK 210 MBAR REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 HOIL-1L NZF DOMAIN, 20 MM HEPES REMARK 210 PH 7.0, 1 MM TCEP, 50 MM SODIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; HSQC-DSSE (IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 78.10 -69.73 REMARK 500 1 GLU A 7 75.28 -119.08 REMARK 500 1 CYS A 16 141.15 -177.12 REMARK 500 1 ILE A 19 98.49 58.17 REMARK 500 1 PRO A 25 64.12 -69.76 REMARK 500 1 MET A 29 -45.47 -134.75 REMARK 500 1 GLN A 45 82.63 64.50 REMARK 500 1 ASP A 47 172.88 -52.84 REMARK 500 1 LEU A 61 -64.36 -90.25 REMARK 500 1 TYR A 64 -72.95 -88.58 REMARK 500 1 GLN A 65 -76.01 -60.35 REMARK 500 2 SER A 5 93.81 -163.54 REMARK 500 2 GLU A 7 69.87 -115.93 REMARK 500 2 CYS A 16 139.97 -177.08 REMARK 500 2 ILE A 19 100.31 58.52 REMARK 500 2 PRO A 25 63.93 -69.76 REMARK 500 2 MET A 29 -45.47 -134.25 REMARK 500 2 GLN A 45 82.82 65.33 REMARK 500 3 SER A 5 160.67 63.59 REMARK 500 3 GLU A 7 74.47 -113.46 REMARK 500 3 CYS A 16 138.39 -177.78 REMARK 500 3 ILE A 19 100.47 61.88 REMARK 500 3 PRO A 25 62.91 -69.71 REMARK 500 3 MET A 29 -44.50 -130.52 REMARK 500 3 TYR A 44 -72.27 -56.94 REMARK 500 3 GLN A 45 83.59 65.62 REMARK 500 3 ASP A 47 170.49 -55.00 REMARK 500 3 LEU A 61 -64.42 -90.50 REMARK 500 3 TYR A 64 -73.84 -81.95 REMARK 500 4 CYS A 16 140.69 -176.51 REMARK 500 4 ILE A 19 101.61 59.15 REMARK 500 4 PRO A 25 64.58 -69.78 REMARK 500 4 MET A 29 -44.81 -134.28 REMARK 500 4 GLN A 45 83.26 64.85 REMARK 500 4 LEU A 61 -68.93 -94.81 REMARK 500 5 PRO A 2 77.44 -69.79 REMARK 500 5 SER A 5 87.42 55.71 REMARK 500 5 GLU A 7 73.50 -113.85 REMARK 500 5 CYS A 16 140.90 -175.91 REMARK 500 5 ILE A 19 101.12 60.09 REMARK 500 5 PRO A 25 64.47 -69.81 REMARK 500 5 MET A 29 -43.24 -133.47 REMARK 500 5 TYR A 44 -70.79 -54.22 REMARK 500 5 GLN A 45 83.46 64.79 REMARK 500 5 LEU A 61 -68.91 -90.34 REMARK 500 5 TYR A 64 -74.21 -78.30 REMARK 500 6 LEU A 3 -76.02 -142.57 REMARK 500 6 SER A 5 161.83 178.75 REMARK 500 6 GLU A 7 69.88 -115.99 REMARK 500 6 CYS A 16 137.36 -178.08 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 100.3 REMARK 620 3 CYS A 27 SG 105.2 110.3 REMARK 620 4 CYS A 30 SG 102.7 90.1 141.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27606 RELATED DB: BMRB REMARK 900 RELATED ID: 12026 RELATED DB: BMRB DBREF 8IM5 A 8 66 UNP Q9WUB0 HOIL1_MOUSE 192 250 SEQADV 8IM5 GLY A 1 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 PRO A 2 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 LEU A 3 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 GLY A 4 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 SER A 5 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 PRO A 6 UNP Q9WUB0 EXPRESSION TAG SEQADV 8IM5 GLU A 7 UNP Q9WUB0 EXPRESSION TAG SEQRES 1 A 66 GLY PRO LEU GLY SER PRO GLU PRO VAL GLY TRP GLN CYS SEQRES 2 A 66 PRO GLY CYS THR PHE ILE ASN LYS PRO THR ARG PRO GLY SEQRES 3 A 66 CYS GLU MET CYS CYS ARG ALA ARG PRO GLU THR TYR GLN SEQRES 4 A 66 ILE PRO ALA SER TYR GLN PRO ASP GLU GLU GLU ARG ALA SEQRES 5 A 66 ARG LEU ALA GLY GLU GLU GLU ALA LEU ARG GLN TYR GLN SEQRES 6 A 66 GLN HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 ASP A 47 LEU A 61 1 15 LINK SG CYS A 13 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 13 ZN ZN A 102 1555 1555 2.14 LINK SG CYS A 16 ZN ZN A 102 1555 1555 2.48 LINK SG CYS A 27 ZN ZN A 102 1555 1555 2.55 LINK SG CYS A 30 ZN ZN A 102 1555 1555 2.49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1