HEADER OXIDOREDUCTASE 06-MAR-23 8IMD TITLE CRYSTAL STRUCTURE OF CU/ZN SUPEROXIDE DISMUTASE FROM PAENIBACILLUS TITLE 2 LAUTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CU/ZN-SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS LAUTUS NBRC 15380; SOURCE 3 ORGANISM_TAXID: 1349780; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SUPEROXIDE DISMUTASE, SOD, SOD1, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NARIKIYO,Y.FURUKAWA,M.AKUTSU REVDAT 1 17-JAN-24 8IMD 0 JRNL AUTH Y.FURUKAWA,A.SHINTANI,S.NARIKIYO,K.SUE,M.AKUTSU,N.MURAKI JRNL TITL CHARACTERIZATION OF A NOVEL CYSTEINE-LESS CU/ZN-SUPEROXIDE JRNL TITL 2 DISMUTASE IN PAENIBACILLUS LAUTUS MISSING A CONSERVED JRNL TITL 3 DISULFIDE BOND. JRNL REF J.BIOL.CHEM. V. 299 05040 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37442237 JRNL DOI 10.1016/J.JBC.2023.105040 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3245 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2942 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4433 ; 1.766 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6829 ; 1.491 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 7.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.617 ;25.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;13.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3871 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 2.031 ; 2.312 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1712 ; 2.028 ; 2.313 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2160 ; 2.801 ; 3.468 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2161 ; 2.801 ; 3.468 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1531 ; 3.146 ; 2.636 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1529 ; 3.146 ; 2.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2274 ; 4.710 ; 3.822 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3488 ; 5.629 ;28.896 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3489 ; 5.628 ;28.899 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.275 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : 1.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 4,000, 100 MM ACETIC ACID REMARK 280 AND SODIUM ACETATE BUFFER, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.62000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.78350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.80600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.78350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.80600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ASN A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 HIS A 11 REMARK 465 THR A 12 REMARK 465 THR A 13 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 ASN B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 10 REMARK 465 HIS B 11 REMARK 465 THR B 12 REMARK 465 THR B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 56.25 -143.88 REMARK 500 ARG A 190 -149.32 -115.07 REMARK 500 VAL A 202 -35.22 -137.71 REMARK 500 ARG B 71 60.65 40.00 REMARK 500 ARG B 190 -150.93 -105.95 REMARK 500 VAL B 202 -37.95 -134.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 ND1 REMARK 620 2 HIS A 121 NE2 141.4 REMARK 620 3 HIS A 195 NE2 98.6 119.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 136 ND1 REMARK 620 2 HIS A 144 ND1 108.3 REMARK 620 3 HIS A 153 ND1 111.8 117.8 REMARK 620 4 ASP A 156 OD1 105.5 101.7 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 ND1 REMARK 620 2 HIS B 121 NE2 138.9 REMARK 620 3 HIS B 195 NE2 99.1 121.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 136 ND1 REMARK 620 2 HIS B 144 ND1 109.2 REMARK 620 3 HIS B 153 ND1 109.9 118.0 REMARK 620 4 ASP B 156 OD1 105.9 99.4 113.5 REMARK 620 N 1 2 3 DBREF 8IMD A -1 220 PDB 8IMD 8IMD -1 220 DBREF 8IMD B -1 220 PDB 8IMD 8IMD -1 220 SEQRES 1 A 222 GLY PRO ASN PRO GLU GLY THR LEU GLU ALA ILE LYS HIS SEQRES 2 A 222 THR THR SER LYS ILE SER TYR TYR VAL ASN GLY LYS ASP SEQRES 3 A 222 HIS SER THR PRO ALA GLY GLN PHE MET ASN GLN GLY THR SEQRES 4 A 222 ALA ALA PRO ASP SER ILE ILE HIS ASN GLY THR THR TYR SEQRES 5 A 222 VAL PRO VAL ARG MET VAL SER ASP LEU VAL GLY GLN PRO SEQRES 6 A 222 VAL TYR TRP GLU GLN ALA SER ARG THR ILE SER LEU GLY SEQRES 7 A 222 LEU PRO VAL VAL LYS LEU TYR ASN ALA ALA GLY GLU SER SEQRES 8 A 222 VAL GLY SER ALA THR LEU GLU GLN ILE ASN ASP GLY VAL SEQRES 9 A 222 LYS VAL LYS ILE THR ALA SER GLY LEU THR PRO GLY LYS SEQRES 10 A 222 HIS GLY PHE HIS VAL HIS GLU ASN VAL ILE GLN GLY GLY SEQRES 11 A 222 ASP PHE LYS SER ALA GLY GLY HIS PHE ASN PRO THR ASP SEQRES 12 A 222 LYS HIS HIS GLY LEU GLU ASN PRO GLN GLY SER HIS VAL SEQRES 13 A 222 GLY ASP MET PRO ASN LEU VAL VAL GLY THR ASP GLY ASN SEQRES 14 A 222 ALA GLU ALA GLU MET ILE ILE GLN HIS GLY THR LEU GLU SEQRES 15 A 222 LYS ASP GLN PRO ASN THR VAL LEU GLY ARG SER LEU ILE SEQRES 16 A 222 ILE HIS ALA GLY GLU ASP ASP GLY VAL THR ASP PRO SER SEQRES 17 A 222 GLY ASN SER GLY ASP ARG VAL ALA GLY GLY ASN ILE PRO SEQRES 18 A 222 GLU SEQRES 1 B 222 GLY PRO ASN PRO GLU GLY THR LEU GLU ALA ILE LYS HIS SEQRES 2 B 222 THR THR SER LYS ILE SER TYR TYR VAL ASN GLY LYS ASP SEQRES 3 B 222 HIS SER THR PRO ALA GLY GLN PHE MET ASN GLN GLY THR SEQRES 4 B 222 ALA ALA PRO ASP SER ILE ILE HIS ASN GLY THR THR TYR SEQRES 5 B 222 VAL PRO VAL ARG MET VAL SER ASP LEU VAL GLY GLN PRO SEQRES 6 B 222 VAL TYR TRP GLU GLN ALA SER ARG THR ILE SER LEU GLY SEQRES 7 B 222 LEU PRO VAL VAL LYS LEU TYR ASN ALA ALA GLY GLU SER SEQRES 8 B 222 VAL GLY SER ALA THR LEU GLU GLN ILE ASN ASP GLY VAL SEQRES 9 B 222 LYS VAL LYS ILE THR ALA SER GLY LEU THR PRO GLY LYS SEQRES 10 B 222 HIS GLY PHE HIS VAL HIS GLU ASN VAL ILE GLN GLY GLY SEQRES 11 B 222 ASP PHE LYS SER ALA GLY GLY HIS PHE ASN PRO THR ASP SEQRES 12 B 222 LYS HIS HIS GLY LEU GLU ASN PRO GLN GLY SER HIS VAL SEQRES 13 B 222 GLY ASP MET PRO ASN LEU VAL VAL GLY THR ASP GLY ASN SEQRES 14 B 222 ALA GLU ALA GLU MET ILE ILE GLN HIS GLY THR LEU GLU SEQRES 15 B 222 LYS ASP GLN PRO ASN THR VAL LEU GLY ARG SER LEU ILE SEQRES 16 B 222 ILE HIS ALA GLY GLU ASP ASP GLY VAL THR ASP PRO SER SEQRES 17 B 222 GLY ASN SER GLY ASP ARG VAL ALA GLY GLY ASN ILE PRO SEQRES 18 B 222 GLU HET MES A 301 12 HET CU A 302 1 HET ZN A 303 1 HET MES B 301 12 HET CU B 302 1 HET ZN B 303 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 4 CU 2(CU 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 9 HOH *307(H2 O) HELIX 1 AA1 MET A 55 GLY A 61 1 7 HELIX 2 AA2 ASP A 129 GLY A 134 5 6 HELIX 3 AA3 VAL B 53 VAL B 60 1 8 HELIX 4 AA4 ASP B 129 GLY B 134 5 6 SHEET 1 AA1 4 LYS A 23 ASP A 24 0 SHEET 2 AA1 4 SER A 17 VAL A 20 -1 N VAL A 20 O LYS A 23 SHEET 3 AA1 4 THR B 72 LEU B 75 1 O LEU B 75 N TYR A 19 SHEET 4 AA1 4 VAL B 64 GLU B 67 -1 N TYR B 65 O SER B 74 SHEET 1 AA2 2 GLN A 31 ASN A 34 0 SHEET 2 AA2 2 THR A 37 PRO A 40 -1 O ALA A 39 N PHE A 32 SHEET 1 AA3 4 ILE A 43 HIS A 45 0 SHEET 2 AA3 4 THR A 48 PRO A 52 -1 O TYR A 50 N ILE A 43 SHEET 3 AA3 4 THR B 48 PRO B 52 -1 O VAL B 51 N VAL A 51 SHEET 4 AA3 4 ILE B 43 HIS B 45 -1 N ILE B 43 O TYR B 50 SHEET 1 AA4 4 VAL A 64 GLU A 67 0 SHEET 2 AA4 4 THR A 72 LEU A 75 -1 O SER A 74 N TYR A 65 SHEET 3 AA4 4 SER B 17 VAL B 20 1 O SER B 17 N ILE A 73 SHEET 4 AA4 4 LYS B 23 ASP B 24 -1 O LYS B 23 N VAL B 20 SHEET 1 AA5 7 PHE A 118 HIS A 121 0 SHEET 2 AA5 7 SER A 191 HIS A 195 -1 O ILE A 193 N HIS A 119 SHEET 3 AA5 7 ARG A 212 ASN A 217 -1 O ALA A 214 N ILE A 194 SHEET 4 AA5 7 VAL A 79 ASN A 84 -1 N TYR A 83 O GLY A 215 SHEET 5 AA5 7 SER A 89 ILE A 98 -1 O ALA A 93 N VAL A 80 SHEET 6 AA5 7 GLY A 101 ALA A 108 -1 O LYS A 103 N GLU A 96 SHEET 7 AA5 7 ALA A 168 GLN A 175 -1 O MET A 172 N VAL A 104 SHEET 1 AA6 2 GLY A 114 HIS A 116 0 SHEET 2 AA6 2 LEU A 160 VAL A 162 -1 O LEU A 160 N HIS A 116 SHEET 1 AA7 2 GLN B 31 ASN B 34 0 SHEET 2 AA7 2 THR B 37 PRO B 40 -1 O ALA B 39 N PHE B 32 SHEET 1 AA8 7 PHE B 118 HIS B 121 0 SHEET 2 AA8 7 SER B 191 HIS B 195 -1 O ILE B 193 N HIS B 119 SHEET 3 AA8 7 ARG B 212 ASN B 217 -1 O GLY B 216 N LEU B 192 SHEET 4 AA8 7 VAL B 79 ASN B 84 -1 N TYR B 83 O GLY B 215 SHEET 5 AA8 7 SER B 89 ILE B 98 -1 O ALA B 93 N VAL B 80 SHEET 6 AA8 7 GLY B 101 ALA B 108 -1 O LYS B 103 N GLU B 96 SHEET 7 AA8 7 ALA B 168 GLN B 175 -1 O ILE B 174 N VAL B 102 SHEET 1 AA9 2 GLY B 114 HIS B 116 0 SHEET 2 AA9 2 LEU B 160 VAL B 162 -1 O VAL B 162 N GLY B 114 LINK ND1 HIS A 119 CU CU A 302 1555 1555 2.02 LINK NE2 HIS A 121 CU CU A 302 1555 1555 1.98 LINK ND1 HIS A 136 ZN ZN A 303 1555 1555 1.96 LINK ND1 HIS A 144 ZN ZN A 303 1555 1555 2.06 LINK ND1 HIS A 153 ZN ZN A 303 1555 1555 2.00 LINK OD1 ASP A 156 ZN ZN A 303 1555 1555 1.97 LINK NE2 HIS A 195 CU CU A 302 1555 1555 2.02 LINK ND1 HIS B 119 CU CU B 302 1555 1555 2.00 LINK NE2 HIS B 121 CU CU B 302 1555 1555 1.98 LINK ND1 HIS B 136 ZN ZN B 303 1555 1555 1.97 LINK ND1 HIS B 144 ZN ZN B 303 1555 1555 2.05 LINK ND1 HIS B 153 ZN ZN B 303 1555 1555 2.01 LINK OD1 ASP B 156 ZN ZN B 303 1555 1555 1.96 LINK NE2 HIS B 195 CU CU B 302 1555 1555 2.02 CISPEP 1 GLY A 151 SER A 152 0 -5.70 CISPEP 2 ASP A 204 PRO A 205 0 -0.85 CISPEP 3 GLY B 151 SER B 152 0 0.81 CISPEP 4 ASP B 204 PRO B 205 0 1.56 CRYST1 45.240 53.612 169.567 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005897 0.00000