HEADER TRANSFERASE 13-MAR-23 8IOZ TITLE CRYSTAL STRUCTURE OF TRANSAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHED CHAIN AMINO ACID: 2-KETO-4-METHYLTHIOBUTYRATE COMPND 3 AMINOTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 2.6.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM VANBAALENII (STRAIN DSM 7251 SOURCE 3 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1); SOURCE 4 ORGANISM_COMMON: MYCOBACTERIUM VANBAALENII; SOURCE 5 ORGANISM_TAXID: 350058; SOURCE 6 GENE: MVAN_4516; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSAMINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LI,Y.M.ZHU,J.GAO,H.L.WEI,X.HAN,W.D.LIU,Y.X.SUN REVDAT 2 06-AUG-25 8IOZ 1 JRNL REVDAT 1 24-JAN-24 8IOZ 0 JRNL AUTH Y.ZHU,P.CHEN,Q.DONG,Q.LI,D.LIU,T.LIU,W.LIU,Y.SUN JRNL TITL PROTEIN ENGINEERING OF TRANSAMINASE FACILITATING ENZYME JRNL TITL 2 CASCADE REACTION FOR THE BIOSYNTHESIS OF AZASUGARS. JRNL REF ISCIENCE V. 27 09034 2024 JRNL REFN ESSN 2589-0042 JRNL PMID 38433920 JRNL DOI 10.1016/J.ISCI.2024.109034 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1694 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4603 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4281 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6266 ; 1.474 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9852 ; 1.233 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 7.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;31.230 ;21.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;17.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5238 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1044 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2333 ; 4.011 ; 5.253 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2332 ; 4.010 ; 5.252 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2904 ; 6.078 ; 7.857 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2905 ; 6.077 ; 7.858 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2270 ; 4.024 ; 5.719 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2270 ; 4.024 ; 5.719 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3362 ; 6.173 ; 8.400 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5002 ; 9.589 ;62.536 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4993 ; 9.586 ;62.512 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17UM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 40.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 38.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE PH7.0,0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 333.14733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 166.57367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 249.86050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.28683 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 416.43417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 333.14733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 166.57367 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.28683 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 249.86050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 416.43417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 ASN A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 TYR A 138 REMARK 465 GLY A 139 REMARK 465 LYS A 140 REMARK 465 ARG A 141 REMARK 465 LYS A 142 REMARK 465 GLY A 143 REMARK 465 GLU A 144 REMARK 465 LYS A 145 REMARK 465 ASP A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 LYS A 149 REMARK 465 LEU A 150 REMARK 465 ARG A 187 REMARK 465 ASN A 188 REMARK 465 THR A 189 REMARK 465 VAL A 190 REMARK 465 ASP A 191 REMARK 465 PRO A 192 REMARK 465 THR A 193 REMARK 465 ILE A 194 REMARK 465 LYS A 195 REMARK 465 ASN A 196 REMARK 465 TYR A 197 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 ASN B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 ALA B 17 REMARK 465 ILE B 18 REMARK 465 GLY B 66 REMARK 465 PHE B 67 REMARK 465 GLY B 68 REMARK 465 HIS B 69 REMARK 465 SER B 70 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 TYR B 138 REMARK 465 GLY B 139 REMARK 465 LYS B 140 REMARK 465 ARG B 141 REMARK 465 LYS B 142 REMARK 465 GLY B 143 REMARK 465 GLU B 144 REMARK 465 LYS B 145 REMARK 465 ASP B 146 REMARK 465 LEU B 147 REMARK 465 SER B 148 REMARK 465 LYS B 149 REMARK 465 LEU B 150 REMARK 465 ALA B 185 REMARK 465 GLY B 186 REMARK 465 ARG B 187 REMARK 465 ASN B 188 REMARK 465 THR B 189 REMARK 465 VAL B 190 REMARK 465 ASP B 191 REMARK 465 PRO B 192 REMARK 465 THR B 193 REMARK 465 ILE B 194 REMARK 465 LYS B 195 REMARK 465 ASN B 196 REMARK 465 TYR B 197 REMARK 465 ASN B 248 REMARK 465 ALA B 249 REMARK 465 LEU B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 199 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 199 CZ3 CH2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 101 CG CD1 CD2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 116.92 82.43 REMARK 500 HIS A 69 33.97 -144.37 REMARK 500 ASP A 71 72.07 -110.28 REMARK 500 ALA A 227 -83.85 -99.43 REMARK 500 PRO A 230 97.20 -65.38 REMARK 500 GLU B 20 116.97 73.09 REMARK 500 GLU B 49 66.15 38.93 REMARK 500 LEU B 101 3.51 82.14 REMARK 500 ALA B 227 -71.73 -98.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 8IOZ A 1 337 UNP A1TDP1 A1TDP1_MYCVP 1 337 DBREF 8IOZ B 1 337 UNP A1TDP1 A1TDP1_MYCVP 1 337 SEQRES 1 A 337 MET GLY ILE ASP THR GLY THR SER ASN LEU VAL ALA VAL SEQRES 2 A 337 GLU PRO GLY ALA ILE ARG GLU ASP THR PRO ALA GLY SER SEQRES 3 A 337 VAL ILE GLN TYR SER ASP TYR GLU ILE ASP TYR SER SER SEQRES 4 A 337 PRO PHE ALA GLY GLY VAL ALA TRP ILE GLU GLY GLU TYR SEQRES 5 A 337 LEU PRO ALA GLU ASP ALA LYS ILE SER ILE PHE ASP THR SEQRES 6 A 337 GLY PHE GLY HIS SER ASP LEU THR TYR THR VAL ALA HIS SEQRES 7 A 337 VAL TRP HIS GLY ASN ILE PHE ARG LEU GLY ASP HIS LEU SEQRES 8 A 337 ASP ARG LEU LEU ASP GLY ALA ARG LYS LEU ARG LEU ASP SEQRES 9 A 337 SER GLY TYR THR LYS ASP GLU LEU ALA ASP ILE THR LYS SEQRES 10 A 337 LYS CYS VAL SER LEU SER GLN LEU ARG GLU SER PHE VAL SEQRES 11 A 337 ASN LEU THR ILE THR ARG GLY TYR GLY LYS ARG LYS GLY SEQRES 12 A 337 GLU LYS ASP LEU SER LYS LEU THR HIS GLN VAL TYR ILE SEQRES 13 A 337 TYR ALA ILE PRO TYR LEU TRP ALA PHE PRO PRO ALA GLU SEQRES 14 A 337 GLN ILE PHE GLY THR THR ALA VAL VAL PRO ARG HIS VAL SEQRES 15 A 337 ARG ARG ALA GLY ARG ASN THR VAL ASP PRO THR ILE LYS SEQRES 16 A 337 ASN TYR GLN TRP GLY ASP LEU THR ALA ALA SER PHE GLU SEQRES 17 A 337 ALA LYS ASP ARG GLY ALA ARG THR ALA ILE LEU MET ASP SEQRES 18 A 337 ALA ASP ASN CYS VAL ALA GLU GLY PRO GLY PHE ASN VAL SEQRES 19 A 337 CYS ILE VAL LYS ASP GLY LYS LEU ALA SER PRO SER ARG SEQRES 20 A 337 ASN ALA LEU PRO GLY ILE THR ARG LYS THR VAL PHE GLU SEQRES 21 A 337 ILE ALA GLY ALA MET GLY ILE GLU ALA ALA LEU ARG ASP SEQRES 22 A 337 VAL THR SER HIS GLU LEU TYR ASP ALA ASP GLU ILE MET SEQRES 23 A 337 ALA VAL THR THR ALA GLY GLY VAL THR PRO ILE ASN THR SEQRES 24 A 337 LEU ASP GLY VAL PRO ILE GLY ASP GLY GLU PRO GLY PRO SEQRES 25 A 337 VAL THR VAL ALA ILE ARG ASP ARG PHE TRP ALA LEU MET SEQRES 26 A 337 ASP GLU PRO GLY PRO LEU ILE GLU ALA ILE GLN TYR SEQRES 1 B 337 MET GLY ILE ASP THR GLY THR SER ASN LEU VAL ALA VAL SEQRES 2 B 337 GLU PRO GLY ALA ILE ARG GLU ASP THR PRO ALA GLY SER SEQRES 3 B 337 VAL ILE GLN TYR SER ASP TYR GLU ILE ASP TYR SER SER SEQRES 4 B 337 PRO PHE ALA GLY GLY VAL ALA TRP ILE GLU GLY GLU TYR SEQRES 5 B 337 LEU PRO ALA GLU ASP ALA LYS ILE SER ILE PHE ASP THR SEQRES 6 B 337 GLY PHE GLY HIS SER ASP LEU THR TYR THR VAL ALA HIS SEQRES 7 B 337 VAL TRP HIS GLY ASN ILE PHE ARG LEU GLY ASP HIS LEU SEQRES 8 B 337 ASP ARG LEU LEU ASP GLY ALA ARG LYS LEU ARG LEU ASP SEQRES 9 B 337 SER GLY TYR THR LYS ASP GLU LEU ALA ASP ILE THR LYS SEQRES 10 B 337 LYS CYS VAL SER LEU SER GLN LEU ARG GLU SER PHE VAL SEQRES 11 B 337 ASN LEU THR ILE THR ARG GLY TYR GLY LYS ARG LYS GLY SEQRES 12 B 337 GLU LYS ASP LEU SER LYS LEU THR HIS GLN VAL TYR ILE SEQRES 13 B 337 TYR ALA ILE PRO TYR LEU TRP ALA PHE PRO PRO ALA GLU SEQRES 14 B 337 GLN ILE PHE GLY THR THR ALA VAL VAL PRO ARG HIS VAL SEQRES 15 B 337 ARG ARG ALA GLY ARG ASN THR VAL ASP PRO THR ILE LYS SEQRES 16 B 337 ASN TYR GLN TRP GLY ASP LEU THR ALA ALA SER PHE GLU SEQRES 17 B 337 ALA LYS ASP ARG GLY ALA ARG THR ALA ILE LEU MET ASP SEQRES 18 B 337 ALA ASP ASN CYS VAL ALA GLU GLY PRO GLY PHE ASN VAL SEQRES 19 B 337 CYS ILE VAL LYS ASP GLY LYS LEU ALA SER PRO SER ARG SEQRES 20 B 337 ASN ALA LEU PRO GLY ILE THR ARG LYS THR VAL PHE GLU SEQRES 21 B 337 ILE ALA GLY ALA MET GLY ILE GLU ALA ALA LEU ARG ASP SEQRES 22 B 337 VAL THR SER HIS GLU LEU TYR ASP ALA ASP GLU ILE MET SEQRES 23 B 337 ALA VAL THR THR ALA GLY GLY VAL THR PRO ILE ASN THR SEQRES 24 B 337 LEU ASP GLY VAL PRO ILE GLY ASP GLY GLU PRO GLY PRO SEQRES 25 B 337 VAL THR VAL ALA ILE ARG ASP ARG PHE TRP ALA LEU MET SEQRES 26 B 337 ASP GLU PRO GLY PRO LEU ILE GLU ALA ILE GLN TYR FORMUL 3 HOH *96(H2 O) HELIX 1 AA1 ASP A 64 HIS A 69 1 6 HELIX 2 AA2 ARG A 86 LEU A 101 1 16 HELIX 3 AA3 THR A 108 GLN A 124 1 17 HELIX 4 AA4 PRO A 166 GLY A 173 1 8 HELIX 5 AA5 TRP A 199 ARG A 212 1 14 HELIX 6 AA6 ILE A 253 MET A 265 1 13 HELIX 7 AA7 THR A 275 ASP A 281 1 7 HELIX 8 AA8 GLY A 311 LEU A 324 1 14 HELIX 9 AA9 ARG B 86 LYS B 100 1 15 HELIX 10 AB1 LEU B 101 LEU B 103 5 3 HELIX 11 AB2 THR B 108 GLN B 124 1 17 HELIX 12 AB3 PRO B 166 GLY B 173 1 8 HELIX 13 AB4 TRP B 199 ARG B 212 1 14 HELIX 14 AB5 ILE B 253 ALA B 264 1 12 HELIX 15 AB6 THR B 275 ALA B 282 1 8 HELIX 16 AB7 GLY B 311 GLU B 327 1 17 SHEET 1 AA1 7 GLU A 51 PRO A 54 0 SHEET 2 AA1 7 VAL A 45 ILE A 48 -1 N ALA A 46 O LEU A 53 SHEET 3 AA1 7 GLN A 153 PRO A 160 -1 O ILE A 156 N TRP A 47 SHEET 4 AA1 7 SER A 128 THR A 135 -1 N THR A 133 O TYR A 155 SHEET 5 AA1 7 LEU A 72 TRP A 80 -1 N THR A 73 O ILE A 134 SHEET 6 AA1 7 ASN A 83 PHE A 85 -1 O ASN A 83 N TRP A 80 SHEET 7 AA1 7 ILE A 332 ALA A 334 -1 O GLU A 333 N ILE A 84 SHEET 1 AA2 2 LYS A 59 SER A 61 0 SHEET 2 AA2 2 LYS B 59 SER B 61 -1 O ILE B 60 N ILE A 60 SHEET 1 AA3 7 THR A 216 ALA A 217 0 SHEET 2 AA3 7 THR A 174 VAL A 177 1 N VAL A 177 O THR A 216 SHEET 3 AA3 7 GLY A 293 LEU A 300 1 O ASN A 298 N THR A 174 SHEET 4 AA3 7 GLU A 284 THR A 289 -1 N ALA A 287 O THR A 295 SHEET 5 AA3 7 ASN A 233 LYS A 238 -1 N VAL A 237 O GLU A 284 SHEET 6 AA3 7 LYS A 241 SER A 244 -1 O ALA A 243 N ILE A 236 SHEET 7 AA3 7 ALA A 269 LEU A 271 1 O ALA A 270 N LEU A 242 SHEET 1 AA4 4 THR A 216 ALA A 217 0 SHEET 2 AA4 4 THR A 174 VAL A 177 1 N VAL A 177 O THR A 216 SHEET 3 AA4 4 GLY A 293 LEU A 300 1 O ASN A 298 N THR A 174 SHEET 4 AA4 4 VAL A 303 PRO A 304 -1 O VAL A 303 N LEU A 300 SHEET 1 AA5 7 GLU B 51 PRO B 54 0 SHEET 2 AA5 7 VAL B 45 ILE B 48 -1 N ALA B 46 O LEU B 53 SHEET 3 AA5 7 VAL B 154 PRO B 160 -1 O ILE B 156 N TRP B 47 SHEET 4 AA5 7 SER B 128 ILE B 134 -1 N THR B 133 O TYR B 155 SHEET 5 AA5 7 THR B 73 TRP B 80 -1 N ALA B 77 O VAL B 130 SHEET 6 AA5 7 ASN B 83 PHE B 85 -1 O ASN B 83 N TRP B 80 SHEET 7 AA5 7 ILE B 332 ALA B 334 -1 O GLU B 333 N ILE B 84 SHEET 1 AA6 7 THR B 216 ALA B 217 0 SHEET 2 AA6 7 THR B 174 VAL B 177 1 N VAL B 177 O THR B 216 SHEET 3 AA6 7 GLY B 293 LEU B 300 1 O ASN B 298 N THR B 174 SHEET 4 AA6 7 GLU B 284 THR B 289 -1 N ALA B 287 O THR B 295 SHEET 5 AA6 7 ASN B 233 LYS B 238 -1 N ASN B 233 O VAL B 288 SHEET 6 AA6 7 LYS B 241 PRO B 245 -1 O ALA B 243 N ILE B 236 SHEET 7 AA6 7 ALA B 269 ARG B 272 1 O ALA B 270 N LEU B 242 SHEET 1 AA7 4 THR B 216 ALA B 217 0 SHEET 2 AA7 4 THR B 174 VAL B 177 1 N VAL B 177 O THR B 216 SHEET 3 AA7 4 GLY B 293 LEU B 300 1 O ASN B 298 N THR B 174 SHEET 4 AA7 4 VAL B 303 PRO B 304 -1 O VAL B 303 N LEU B 300 SHEET 1 AA8 2 LEU B 219 MET B 220 0 SHEET 2 AA8 2 VAL B 226 GLU B 228 -1 O ALA B 227 N LEU B 219 CRYST1 71.443 71.443 499.721 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013997 0.008081 0.000000 0.00000 SCALE2 0.000000 0.016163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002001 0.00000 TER 2249 TYR A 337 TER 4407 TYR B 337 HETATM 4408 O HOH A 401 -53.531 -1.130 17.357 1.00 59.62 O HETATM 4409 O HOH A 402 -39.792 -44.856 7.945 1.00 45.02 O HETATM 4410 O HOH A 403 -23.429 -17.542 13.120 1.00 57.62 O HETATM 4411 O HOH A 404 -58.374 -29.907 2.036 1.00 53.73 O HETATM 4412 O HOH A 405 -49.742 -27.767 20.020 1.00 38.41 O HETATM 4413 O HOH A 406 -36.044 -23.657 30.548 1.00 46.85 O HETATM 4414 O HOH A 407 -51.203 -20.438 -11.509 1.00 40.65 O HETATM 4415 O HOH A 408 -38.004 -39.222 10.465 1.00 28.44 O HETATM 4416 O HOH A 409 -40.112 -28.398 -9.861 1.00 45.45 O HETATM 4417 O HOH A 410 -40.247 -4.527 -8.732 1.00 49.91 O HETATM 4418 O HOH A 411 -36.937 -12.333 -3.615 1.00 38.36 O HETATM 4419 O HOH A 412 -41.566 -4.199 3.400 1.00 43.70 O HETATM 4420 O HOH A 413 -44.687 -25.746 -13.594 1.00 50.19 O HETATM 4421 O HOH A 414 -44.221 -40.419 4.914 1.00 42.94 O HETATM 4422 O HOH A 415 -40.089 -21.948 4.931 1.00 44.83 O HETATM 4423 O HOH A 416 -50.233 -33.833 21.043 1.00 44.11 O HETATM 4424 O HOH A 417 -53.353 -34.687 10.557 1.00 29.09 O HETATM 4425 O HOH A 418 -44.779 -29.029 10.842 1.00 42.57 O HETATM 4426 O HOH A 419 -48.806 -2.143 1.215 1.00 39.06 O HETATM 4427 O HOH A 420 -47.980 -21.645 10.012 1.00 33.84 O HETATM 4428 O HOH A 421 -50.738 -26.114 6.959 1.00 29.73 O HETATM 4429 O HOH A 422 -62.598 -21.900 -4.061 1.00 67.44 O HETATM 4430 O HOH A 423 -54.891 -8.249 2.991 1.00 35.22 O HETATM 4431 O HOH A 424 -53.150 -17.445 -2.193 1.00 34.40 O HETATM 4432 O HOH A 425 -42.954 -38.829 30.851 1.00 43.10 O HETATM 4433 O HOH A 426 -38.534 -28.855 9.786 1.00 35.32 O HETATM 4434 O HOH A 427 -61.560 -19.963 2.732 1.00 41.94 O HETATM 4435 O HOH A 428 -46.619 -13.810 -10.179 1.00 43.01 O HETATM 4436 O HOH A 429 -41.244 -9.146 -12.458 1.00 52.76 O HETATM 4437 O HOH A 430 -52.928 -21.608 -9.616 1.00 60.40 O HETATM 4438 O HOH A 431 -44.680 -26.713 15.397 1.00 37.83 O HETATM 4439 O HOH A 432 -52.703 -33.349 -2.378 1.00 51.15 O HETATM 4440 O HOH A 433 -39.587 -16.018 1.736 1.00 42.72 O HETATM 4441 O HOH A 434 -53.233 -20.150 -1.491 1.00 40.73 O HETATM 4442 O HOH A 435 -38.832 -14.992 9.773 1.00 64.23 O HETATM 4443 O HOH A 436 -41.849 -31.193 31.459 1.00 52.33 O HETATM 4444 O HOH A 437 -43.708 -41.779 27.047 1.00 49.69 O HETATM 4445 O HOH A 438 -45.666 -2.549 -1.408 1.00 40.12 O HETATM 4446 O HOH A 439 -37.255 -40.015 8.347 1.00 49.58 O HETATM 4447 O HOH A 440 -39.837 -31.358 10.234 1.00 44.03 O HETATM 4448 O HOH A 441 -29.445 -41.073 26.335 1.00 55.58 O HETATM 4449 O HOH A 442 -49.454 -13.792 13.590 1.00 60.00 O HETATM 4450 O HOH A 443 -59.093 -25.861 2.154 1.00 48.46 O HETATM 4451 O HOH A 444 -47.540 -12.239 11.922 1.00 48.38 O HETATM 4452 O HOH A 445 -40.335 -20.861 -11.088 1.00 53.95 O HETATM 4453 O HOH A 446 -46.997 -19.593 18.667 1.00 57.84 O HETATM 4454 O HOH A 447 -36.714 -26.106 3.698 1.00 33.05 O HETATM 4455 O HOH A 448 -24.870 -24.888 29.281 1.00 52.77 O HETATM 4456 O HOH A 449 -42.503 -41.284 3.472 1.00 39.05 O HETATM 4457 O HOH A 450 -39.044 -24.857 7.142 1.00 42.42 O HETATM 4458 O HOH A 451 -23.780 -42.399 13.184 1.00 51.12 O HETATM 4459 O HOH A 452 -48.524 -21.636 19.132 1.00 46.53 O HETATM 4460 O HOH A 453 -58.633 -30.189 4.836 1.00 49.32 O HETATM 4461 O HOH A 454 -27.854 -23.010 11.146 1.00 58.36 O HETATM 4462 O HOH A 455 -28.724 -24.592 9.340 1.00 50.98 O HETATM 4463 O HOH A 456 -42.365 -45.609 8.426 1.00 49.95 O HETATM 4464 O HOH A 457 -50.278 -13.766 -16.750 1.00 58.51 O HETATM 4465 O HOH A 458 -45.110 -19.449 17.109 1.00 61.37 O HETATM 4466 O HOH A 459 -37.200 -44.147 7.744 1.00 49.68 O HETATM 4467 O HOH A 460 -56.213 -6.406 4.801 1.00 41.51 O HETATM 4468 O HOH A 461 -40.959 -46.237 10.956 1.00 61.90 O HETATM 4469 O HOH A 462 -60.831 -24.616 1.500 1.00 56.25 O HETATM 4470 O HOH A 463 -29.869 -22.356 8.919 1.00 55.83 O HETATM 4471 O HOH B 401 9.594 -3.736 27.572 1.00 45.66 O HETATM 4472 O HOH B 402 1.173 -18.828 3.447 1.00 33.60 O HETATM 4473 O HOH B 403 -17.985 -16.961 41.282 1.00 48.19 O HETATM 4474 O HOH B 404 -8.390 -5.172 17.772 1.00 47.52 O HETATM 4475 O HOH B 405 13.637 -10.259 8.376 1.00 35.15 O HETATM 4476 O HOH B 406 -17.790 8.023 27.133 1.00 53.97 O HETATM 4477 O HOH B 407 -3.455 -11.726 23.217 1.00 43.43 O HETATM 4478 O HOH B 408 -16.720 -20.066 47.539 1.00 51.85 O HETATM 4479 O HOH B 409 5.418 -21.832 15.534 1.00 49.73 O HETATM 4480 O HOH B 410 -17.202 -11.083 46.993 1.00 37.81 O HETATM 4481 O HOH B 411 -7.390 -7.156 11.198 1.00 44.56 O HETATM 4482 O HOH B 412 5.822 -18.313 11.008 1.00 32.66 O HETATM 4483 O HOH B 413 4.276 -2.841 4.263 1.00 48.48 O HETATM 4484 O HOH B 414 13.472 -5.889 16.951 1.00 43.54 O HETATM 4485 O HOH B 415 -12.866 3.124 32.710 1.00 43.73 O HETATM 4486 O HOH B 416 -3.085 -9.449 21.069 1.00 44.92 O HETATM 4487 O HOH B 417 11.757 -13.008 21.190 1.00 50.40 O HETATM 4488 O HOH B 418 -5.964 -16.460 4.056 1.00 42.42 O HETATM 4489 O HOH B 419 10.011 -0.133 12.861 1.00 59.13 O HETATM 4490 O HOH B 420 6.758 -6.675 16.805 1.00 38.01 O HETATM 4491 O HOH B 421 9.001 1.434 10.278 1.00 54.84 O HETATM 4492 O HOH B 422 1.173 -4.913 34.444 1.00 47.54 O HETATM 4493 O HOH B 423 -10.964 -0.521 18.419 1.00 61.51 O HETATM 4494 O HOH B 424 -9.083 -10.584 28.883 1.00 45.86 O HETATM 4495 O HOH B 425 11.811 -18.647 11.794 1.00 46.05 O HETATM 4496 O HOH B 426 9.975 -7.016 24.592 1.00 54.28 O HETATM 4497 O HOH B 427 3.033 -17.443 29.098 1.00 43.55 O HETATM 4498 O HOH B 428 -18.220 5.312 33.578 1.00 56.15 O HETATM 4499 O HOH B 429 -2.594 0.000 0.000 0.50 61.75 O HETATM 4500 O HOH B 430 8.511 -5.673 29.179 1.00 51.44 O HETATM 4501 O HOH B 431 5.019 -22.031 6.307 1.00 47.35 O HETATM 4502 O HOH B 432 -8.506 -20.010 -1.584 1.00 57.28 O HETATM 4503 O HOH B 433 5.970 -21.066 11.745 1.00 46.02 O MASTER 424 0 0 16 40 0 0 6 4501 2 0 52 END