HEADER LYASE 20-MAR-23 8IS0 TITLE CARBON SULFOXIDE LYASE - Y106F COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HERCYNYLCYSTEINE SULFOXIDE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.4.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 GENE: EGTE, MSMEG_6246, MSMEI_6085; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE, CARBON SULFOXIDE LYASE, EGTE EXPDTA X-RAY DIFFRACTION AUTHOR W.M.GONG,L.L.WEI,L.LIU REVDAT 2 13-MAR-24 8IS0 1 JRNL REVDAT 1 06-MAR-24 8IS0 0 JRNL AUTH L.WEI,L.LIU,W.GONG JRNL TITL STRUCTURE OF MYCOBACTERIAL ERGOTHIONEINE-BIOSYNTHESIS C-S JRNL TITL 2 LYASE EGTE. JRNL REF J.BIOL.CHEM. V. 300 05539 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38072054 JRNL DOI 10.1016/J.JBC.2023.105539 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.867 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.309 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5683 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5202 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7763 ; 1.201 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12064 ; 0.417 ; 1.544 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 748 ; 7.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;20.332 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;18.699 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 901 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6681 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1071 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2998 ; 5.821 ; 8.219 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2998 ; 5.821 ; 8.220 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3744 ; 8.789 ;12.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3745 ; 8.789 ;12.277 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2685 ; 5.560 ; 8.601 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2684 ; 5.558 ; 8.601 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4019 ; 8.285 ;12.771 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6366 ;11.543 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6365 ;11.542 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300036368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23776 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA, PH 7.5, 12% PEG 20000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.75900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.63750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.75900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 86.63750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -96.25532 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 134.89517 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -144.38297 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 202.34275 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 SER A 231 OG REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 TRP A 233 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 233 CZ3 CH2 REMARK 470 TRP B 233 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 233 CZ3 CH2 REMARK 470 ILE B 235 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 203 N DHA B 402 1.87 REMARK 500 NZ LYS A 203 N DHA A 402 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 55.05 -151.65 REMARK 500 SER A 25 -160.11 -77.81 REMARK 500 ARG A 97 65.39 -116.71 REMARK 500 PRO A 162 78.28 -65.34 REMARK 500 ASP A 189 102.07 -57.21 REMARK 500 VAL A 192 -2.91 -145.22 REMARK 500 LYS A 203 -124.59 -95.51 REMARK 500 ALA A 338 72.05 -154.42 REMARK 500 GLU A 341 -51.67 -149.70 REMARK 500 PRO B 12 153.19 -48.24 REMARK 500 ASP B 20 41.79 -153.16 REMARK 500 SER B 25 -159.13 -76.92 REMARK 500 ARG B 97 64.08 -115.49 REMARK 500 PRO B 162 78.44 -66.07 REMARK 500 HIS B 187 -43.38 -149.51 REMARK 500 ASP B 189 102.09 -58.58 REMARK 500 VAL B 192 -2.39 -147.39 REMARK 500 LYS B 203 -122.87 -96.11 REMARK 500 ALA B 338 72.85 -153.26 REMARK 500 GLU B 341 -52.98 -149.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A -4 0.18 SIDE CHAIN REMARK 500 ARG A 8 0.16 SIDE CHAIN REMARK 500 ARG A 11 0.08 SIDE CHAIN REMARK 500 ARG A 62 0.11 SIDE CHAIN REMARK 500 ARG A 157 0.18 SIDE CHAIN REMARK 500 ARG A 209 0.22 SIDE CHAIN REMARK 500 ARG A 223 0.08 SIDE CHAIN REMARK 500 ARG A 227 0.23 SIDE CHAIN REMARK 500 ARG A 293 0.10 SIDE CHAIN REMARK 500 ARG A 326 0.10 SIDE CHAIN REMARK 500 ARG A 337 0.08 SIDE CHAIN REMARK 500 ARG A 343 0.10 SIDE CHAIN REMARK 500 ARG B 157 0.16 SIDE CHAIN REMARK 500 ARG B 209 0.20 SIDE CHAIN REMARK 500 ARG B 217 0.14 SIDE CHAIN REMARK 500 ARG B 223 0.10 SIDE CHAIN REMARK 500 ARG B 227 0.22 SIDE CHAIN REMARK 500 ARG B 326 0.09 SIDE CHAIN REMARK 500 ARG B 337 0.08 SIDE CHAIN REMARK 500 ARG B 343 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8IS0 A 2 371 UNP A0R5M7 EGTE_MYCS2 2 371 DBREF 8IS0 B 2 371 UNP A0R5M7 EGTE_MYCS2 2 371 SEQADV 8IS0 MET A -20 UNP A0R5M7 INITIATING METHIONINE SEQADV 8IS0 GLY A -19 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER A -18 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER A -17 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -16 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -15 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -14 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -13 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -12 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -11 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER A -10 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER A -9 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 GLY A -8 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 LEU A -7 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 VAL A -6 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 PRO A -5 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 ARG A -4 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 GLY A -3 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER A -2 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS A -1 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 MET A 0 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 VAL A 1 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 PHE A 106 UNP A0R5M7 TYR 106 ENGINEERED MUTATION SEQADV 8IS0 MET B -20 UNP A0R5M7 INITIATING METHIONINE SEQADV 8IS0 GLY B -19 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER B -18 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER B -17 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -16 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -15 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -14 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -13 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -12 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -11 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER B -10 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER B -9 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 GLY B -8 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 LEU B -7 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 VAL B -6 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 PRO B -5 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 ARG B -4 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 GLY B -3 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 SER B -2 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 HIS B -1 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 MET B 0 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 VAL B 1 UNP A0R5M7 EXPRESSION TAG SEQADV 8IS0 PHE B 106 UNP A0R5M7 TYR 106 ENGINEERED MUTATION SEQRES 1 A 392 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 392 LEU VAL PRO ARG GLY SER HIS MET VAL MET LEU ALA GLN SEQRES 3 A 392 GLN TRP ARG ASP ALA ARG PRO LYS VAL ALA GLY LEU HIS SEQRES 4 A 392 LEU ASP SER GLY ALA CYS SER ARG GLN SER PHE ALA VAL SEQRES 5 A 392 ILE ASP ALA THR THR ALA HIS ALA ARG HIS GLU ALA GLU SEQRES 6 A 392 VAL GLY GLY TYR VAL ALA ALA GLU ALA ALA THR PRO ALA SEQRES 7 A 392 LEU ASP ALA GLY ARG ALA ALA VAL ALA SER LEU ILE GLY SEQRES 8 A 392 PHE ALA ALA SER ASP VAL VAL TYR THR SER GLY SER ASN SEQRES 9 A 392 HIS ALA ILE ASP LEU LEU LEU SER SER TRP PRO GLY LYS SEQRES 10 A 392 ARG THR LEU ALA CYS LEU PRO GLY GLU PHE GLY PRO ASN SEQRES 11 A 392 LEU SER ALA MET ALA ALA ASN GLY PHE GLN VAL ARG ALA SEQRES 12 A 392 LEU PRO VAL ASP ASP ASP GLY ARG VAL LEU VAL ASP GLU SEQRES 13 A 392 ALA SER HIS GLU LEU SER ALA HIS PRO VAL ALA LEU VAL SEQRES 14 A 392 HIS LEU THR ALA LEU ALA SER HIS ARG GLY ILE ALA GLN SEQRES 15 A 392 PRO ALA ALA GLU LEU VAL GLU ALA CYS HIS ASN ALA GLY SEQRES 16 A 392 ILE PRO VAL VAL ILE ASP ALA ALA GLN ALA LEU GLY HIS SEQRES 17 A 392 LEU ASP CYS ASN VAL GLY ALA ASP ALA VAL TYR SER SER SEQRES 18 A 392 SER ARG LYS TRP LEU ALA GLY PRO ARG GLY VAL GLY VAL SEQRES 19 A 392 LEU ALA VAL ARG PRO GLU LEU ALA GLU ARG LEU GLN PRO SEQRES 20 A 392 ARG ILE PRO PRO SER ASP TRP PRO ILE PRO MET SER VAL SEQRES 21 A 392 LEU GLU LYS LEU GLU LEU GLY GLU HIS ASN ALA ALA ALA SEQRES 22 A 392 ARG VAL GLY PHE SER VAL ALA VAL GLY GLU HIS LEU ALA SEQRES 23 A 392 ALA GLY PRO THR ALA VAL ARG GLU ARG LEU ALA GLU VAL SEQRES 24 A 392 GLY ARG LEU SER ARG GLN VAL LEU ALA GLU VAL ASP GLY SEQRES 25 A 392 TRP ARG VAL VAL GLU PRO VAL ASP GLN PRO THR ALA ILE SEQRES 26 A 392 THR THR LEU GLU SER THR ASP GLY ALA ASP PRO ALA SER SEQRES 27 A 392 VAL ARG SER TRP LEU ILE ALA GLU ARG GLY ILE VAL THR SEQRES 28 A 392 THR ALA CYS GLU LEU ALA ARG ALA PRO PHE GLU MET ARG SEQRES 29 A 392 THR PRO VAL LEU ARG ILE SER PRO HIS VAL ASP VAL THR SEQRES 30 A 392 VAL ASP GLU LEU GLU GLN PHE ALA ALA ALA LEU ARG GLU SEQRES 31 A 392 ALA PRO SEQRES 1 B 392 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 392 LEU VAL PRO ARG GLY SER HIS MET VAL MET LEU ALA GLN SEQRES 3 B 392 GLN TRP ARG ASP ALA ARG PRO LYS VAL ALA GLY LEU HIS SEQRES 4 B 392 LEU ASP SER GLY ALA CYS SER ARG GLN SER PHE ALA VAL SEQRES 5 B 392 ILE ASP ALA THR THR ALA HIS ALA ARG HIS GLU ALA GLU SEQRES 6 B 392 VAL GLY GLY TYR VAL ALA ALA GLU ALA ALA THR PRO ALA SEQRES 7 B 392 LEU ASP ALA GLY ARG ALA ALA VAL ALA SER LEU ILE GLY SEQRES 8 B 392 PHE ALA ALA SER ASP VAL VAL TYR THR SER GLY SER ASN SEQRES 9 B 392 HIS ALA ILE ASP LEU LEU LEU SER SER TRP PRO GLY LYS SEQRES 10 B 392 ARG THR LEU ALA CYS LEU PRO GLY GLU PHE GLY PRO ASN SEQRES 11 B 392 LEU SER ALA MET ALA ALA ASN GLY PHE GLN VAL ARG ALA SEQRES 12 B 392 LEU PRO VAL ASP ASP ASP GLY ARG VAL LEU VAL ASP GLU SEQRES 13 B 392 ALA SER HIS GLU LEU SER ALA HIS PRO VAL ALA LEU VAL SEQRES 14 B 392 HIS LEU THR ALA LEU ALA SER HIS ARG GLY ILE ALA GLN SEQRES 15 B 392 PRO ALA ALA GLU LEU VAL GLU ALA CYS HIS ASN ALA GLY SEQRES 16 B 392 ILE PRO VAL VAL ILE ASP ALA ALA GLN ALA LEU GLY HIS SEQRES 17 B 392 LEU ASP CYS ASN VAL GLY ALA ASP ALA VAL TYR SER SER SEQRES 18 B 392 SER ARG LYS TRP LEU ALA GLY PRO ARG GLY VAL GLY VAL SEQRES 19 B 392 LEU ALA VAL ARG PRO GLU LEU ALA GLU ARG LEU GLN PRO SEQRES 20 B 392 ARG ILE PRO PRO SER ASP TRP PRO ILE PRO MET SER VAL SEQRES 21 B 392 LEU GLU LYS LEU GLU LEU GLY GLU HIS ASN ALA ALA ALA SEQRES 22 B 392 ARG VAL GLY PHE SER VAL ALA VAL GLY GLU HIS LEU ALA SEQRES 23 B 392 ALA GLY PRO THR ALA VAL ARG GLU ARG LEU ALA GLU VAL SEQRES 24 B 392 GLY ARG LEU SER ARG GLN VAL LEU ALA GLU VAL ASP GLY SEQRES 25 B 392 TRP ARG VAL VAL GLU PRO VAL ASP GLN PRO THR ALA ILE SEQRES 26 B 392 THR THR LEU GLU SER THR ASP GLY ALA ASP PRO ALA SER SEQRES 27 B 392 VAL ARG SER TRP LEU ILE ALA GLU ARG GLY ILE VAL THR SEQRES 28 B 392 THR ALA CYS GLU LEU ALA ARG ALA PRO PHE GLU MET ARG SEQRES 29 B 392 THR PRO VAL LEU ARG ILE SER PRO HIS VAL ASP VAL THR SEQRES 30 B 392 VAL ASP GLU LEU GLU GLN PHE ALA ALA ALA LEU ARG GLU SEQRES 31 B 392 ALA PRO HET PLP A 401 15 HET DHA A 402 6 HET PLP B 401 15 HET DHA B 402 6 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM DHA 2-AMINO-ACRYLIC ACID HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN DHA 2,3-DIDEHYDROALANINE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 DHA 2(C3 H5 N O2) FORMUL 7 HOH *38(H2 O) HELIX 1 AA1 VAL A 1 ALA A 10 1 10 HELIX 2 AA2 ASP A 20 SER A 25 1 6 HELIX 3 AA3 SER A 28 GLY A 46 1 19 HELIX 4 AA4 GLY A 46 ALA A 54 1 9 HELIX 5 AA5 ALA A 54 GLY A 70 1 17 HELIX 6 AA6 ALA A 72 SER A 74 5 3 HELIX 7 AA7 GLY A 81 SER A 92 1 12 HELIX 8 AA8 PHE A 106 ASN A 116 1 11 HELIX 9 AA9 LEU A 132 HIS A 143 1 12 HELIX 10 AB1 PRO A 162 ALA A 173 1 12 HELIX 11 AB2 ARG A 217 LEU A 224 1 8 HELIX 12 AB3 SER A 238 GLU A 244 1 7 HELIX 13 AB4 ASN A 249 GLY A 267 1 19 HELIX 14 AB5 GLY A 267 ALA A 287 1 21 HELIX 15 AB6 ASP A 314 GLY A 327 1 14 HELIX 16 AB7 GLU A 334 ALA A 338 5 5 HELIX 17 AB8 THR A 356 GLU A 369 1 14 HELIX 18 AB9 MET B 2 ALA B 10 1 9 HELIX 19 AC1 ASP B 20 SER B 25 1 6 HELIX 20 AC2 SER B 28 GLY B 46 1 19 HELIX 21 AC3 GLY B 46 ALA B 54 1 9 HELIX 22 AC4 ALA B 54 GLY B 70 1 17 HELIX 23 AC5 ALA B 72 SER B 74 5 3 HELIX 24 AC6 GLY B 81 SER B 91 1 11 HELIX 25 AC7 PHE B 106 ASN B 116 1 11 HELIX 26 AC8 LEU B 132 HIS B 143 1 12 HELIX 27 AC9 PRO B 162 ALA B 173 1 12 HELIX 28 AD1 ARG B 217 LEU B 224 1 8 HELIX 29 AD2 SER B 238 GLU B 244 1 7 HELIX 30 AD3 ASN B 249 GLY B 267 1 19 HELIX 31 AD4 GLY B 267 ALA B 287 1 21 HELIX 32 AD5 ASP B 314 GLY B 327 1 14 HELIX 33 AD6 GLU B 334 ALA B 338 5 5 HELIX 34 AD7 THR B 356 GLU B 369 1 14 SHEET 1 AA1 2 LEU A 17 HIS A 18 0 SHEET 2 AA1 2 ILE A 328 VAL A 329 1 O VAL A 329 N LEU A 17 SHEET 1 AA2 7 VAL A 76 THR A 79 0 SHEET 2 AA2 7 GLY A 212 VAL A 216 -1 O LEU A 214 N VAL A 77 SHEET 3 AA2 7 ALA A 196 SER A 200 -1 N VAL A 197 O ALA A 215 SHEET 4 AA2 7 VAL A 177 ASP A 180 1 N ILE A 179 O ALA A 196 SHEET 5 AA2 7 VAL A 148 THR A 151 1 N VAL A 148 O VAL A 178 SHEET 6 AA2 7 THR A 98 CYS A 101 1 N ALA A 100 O HIS A 149 SHEET 7 AA2 7 GLN A 119 ALA A 122 1 O ARG A 121 N LEU A 99 SHEET 1 AA3 2 LEU A 153 ALA A 154 0 SHEET 2 AA3 2 ARG A 157 ALA A 160 -1 O ARG A 157 N ALA A 154 SHEET 1 AA4 4 ARG A 293 VAL A 294 0 SHEET 2 AA4 4 THR A 305 GLU A 308 -1 O GLU A 308 N ARG A 293 SHEET 3 AA4 4 VAL A 346 ILE A 349 -1 O ILE A 349 N THR A 305 SHEET 4 AA4 4 THR A 331 CYS A 333 -1 N THR A 331 O ARG A 348 SHEET 1 AA5 2 LEU B 17 HIS B 18 0 SHEET 2 AA5 2 ILE B 328 VAL B 329 1 O VAL B 329 N LEU B 17 SHEET 1 AA6 7 VAL B 76 THR B 79 0 SHEET 2 AA6 7 GLY B 212 VAL B 216 -1 O GLY B 212 N THR B 79 SHEET 3 AA6 7 ALA B 196 SER B 200 -1 N VAL B 197 O ALA B 215 SHEET 4 AA6 7 VAL B 177 ASP B 180 1 N ILE B 179 O ALA B 196 SHEET 5 AA6 7 VAL B 148 THR B 151 1 N VAL B 148 O VAL B 178 SHEET 6 AA6 7 THR B 98 CYS B 101 1 N ALA B 100 O HIS B 149 SHEET 7 AA6 7 GLN B 119 ALA B 122 1 O ARG B 121 N LEU B 99 SHEET 1 AA7 4 ARG B 293 VAL B 294 0 SHEET 2 AA7 4 THR B 305 GLU B 308 -1 O GLU B 308 N ARG B 293 SHEET 3 AA7 4 VAL B 346 ILE B 349 -1 O ILE B 349 N THR B 305 SHEET 4 AA7 4 THR B 331 CYS B 333 -1 N THR B 331 O ARG B 348 LINK NZ LYS A 203 C4A PLP A 401 1555 1555 1.28 LINK C4A PLP A 401 N DHA A 402 1555 1555 1.30 LINK NZ LYS B 203 C4A PLP B 401 1555 1555 1.28 LINK C4A PLP B 401 N DHA B 402 1555 1555 1.31 CISPEP 1 ILE A 228 PRO A 229 0 -10.98 CISPEP 2 ILE B 228 PRO B 229 0 -11.29 CRYST1 107.518 173.275 82.858 90.00 125.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009301 0.000000 0.006637 0.00000 SCALE2 0.000000 0.005771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014826 0.00000