HEADER HYDROLASE 20-MAR-23 8IS4 TITLE STRUCTURE OF AN ISOCYTOSINE SPECIFIC DEAMINASE VCZ IN COMPLEXED WITH TITLE 2 5-FU COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYDECHLOROATRAZINE ETHYLAMINOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OBESUMBACTERIUM PROTEUS; SOURCE 3 ORGANISM_TAXID: 82983; SOURCE 4 GENE: DSM2777_13610; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ISOCYTOSINE, DEAMINASE, VCZ, 5-FU, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.GUO,X.J.LI,B.X.WU REVDAT 2 20-SEP-23 8IS4 1 JRNL REVDAT 1 30-AUG-23 8IS4 0 JRNL AUTH W.GUO,X.LI,J.FAN,H.LI,Y.WEN,C.MENG,H.CHEN,Z.ZHAO,Y.ZHANG, JRNL AUTH 2 Y.DU,B.WU JRNL TITL STRUCTURAL CHARACTERIZATION OF AN ISOCYTOSINE-SPECIFIC JRNL TITL 2 DEAMINASE VCZ REVEALS ITS APPLICATION POTENTIAL IN THE JRNL TITL 3 ANTI-CANCER THERAPY. JRNL REF ISCIENCE V. 26 07672 2023 JRNL REFN ESSN 2589-0042 JRNL PMID 37680460 JRNL DOI 10.1016/J.ISCI.2023.107672 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6700 - 5.5500 1.00 2881 174 0.1483 0.1572 REMARK 3 2 5.5500 - 4.4100 1.00 2787 141 0.1305 0.1428 REMARK 3 3 4.4100 - 3.8500 1.00 2765 129 0.1227 0.1490 REMARK 3 4 3.8500 - 3.5000 1.00 2746 143 0.1395 0.1819 REMARK 3 5 3.5000 - 3.2500 1.00 2706 138 0.1495 0.1572 REMARK 3 6 3.2500 - 3.0600 1.00 2730 145 0.1615 0.2355 REMARK 3 7 3.0600 - 2.9000 1.00 2677 133 0.1670 0.2097 REMARK 3 8 2.9000 - 2.7800 1.00 2727 144 0.1623 0.1889 REMARK 3 9 2.7800 - 2.6700 1.00 2679 150 0.1673 0.2060 REMARK 3 10 2.6700 - 2.5800 1.00 2698 146 0.1617 0.2137 REMARK 3 11 2.5800 - 2.5000 1.00 2681 151 0.1641 0.2163 REMARK 3 12 2.5000 - 2.4300 1.00 2669 146 0.1703 0.2017 REMARK 3 13 2.4300 - 2.3600 1.00 2665 141 0.1611 0.2113 REMARK 3 14 2.3600 - 2.3100 1.00 2695 150 0.1594 0.2009 REMARK 3 15 2.3000 - 2.2500 1.00 2648 152 0.1617 0.1905 REMARK 3 16 2.2500 - 2.2000 1.00 2660 136 0.1617 0.1975 REMARK 3 17 2.2000 - 2.1600 1.00 2675 144 0.1611 0.2201 REMARK 3 18 2.1600 - 2.1200 1.00 2678 136 0.1622 0.2474 REMARK 3 19 2.1200 - 2.0800 1.00 2695 131 0.1670 0.1873 REMARK 3 20 2.0800 - 2.0500 1.00 2666 146 0.1699 0.2171 REMARK 3 21 2.0500 - 2.0100 1.00 2663 134 0.1772 0.2212 REMARK 3 22 2.0100 - 1.9800 1.00 2679 132 0.1869 0.1974 REMARK 3 23 1.9800 - 1.9500 1.00 2644 141 0.1925 0.2299 REMARK 3 24 1.9500 - 1.9300 1.00 2677 141 0.1928 0.2532 REMARK 3 25 1.9300 - 1.9000 1.00 2635 139 0.2037 0.2370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7030 REMARK 3 ANGLE : 1.007 9542 REMARK 3 CHIRALITY : 0.061 1080 REMARK 3 PLANARITY : 0.016 1266 REMARK 3 DIHEDRAL : 6.279 994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -1.8102 -15.6614 -28.3217 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.0987 REMARK 3 T33: 0.1313 T12: 0.0032 REMARK 3 T13: 0.0039 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.0427 L22: 0.4570 REMARK 3 L33: 0.5969 L12: -0.0009 REMARK 3 L13: 0.2682 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.0436 S13: 0.0475 REMARK 3 S21: -0.0448 S22: 0.0323 S23: 0.0033 REMARK 3 S31: -0.0671 S32: -0.0078 S33: 0.0257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 3 through 106 or REMARK 3 resid 108 through 110 or resid 112 REMARK 3 through 146 or resid 148 through 162 or REMARK 3 (resid 163 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 164 REMARK 3 through 177 or (resid 178 through 179 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 180 through 239 or REMARK 3 resid 241 through 280 or resid 282 REMARK 3 through 339 or resid 341 through 421 or REMARK 3 resid 423 through 443 or (resid 444 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 445 through 451)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 3 through 106 or REMARK 3 resid 108 through 110 or resid 112 REMARK 3 through 146 or resid 148 through 164 or REMARK 3 (resid 165 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 166 REMARK 3 through 239 or resid 241 through 245 or REMARK 3 (resid 246 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 247 REMARK 3 through 280 or resid 282 through 339 or REMARK 3 resid 341 through 421 or resid 423 REMARK 3 through 451)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 30-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300036406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M BIS-TRIS, PH 6.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.19400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.28550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.99300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.28550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.19400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.99300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 455 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ARG B 452 REMARK 465 HIS B 453 REMARK 465 ARG B 454 REMARK 465 LEU B 455 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 GLN A 246 CG CD OE1 NE2 REMARK 470 ARG B 163 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 ARG B 444 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 603 O HOH B 718 1.92 REMARK 500 NH1 ARG B 214 O HOH B 601 2.15 REMARK 500 OE1 GLU A 175 O HOH A 601 2.18 REMARK 500 OD1 ASN A 413 O HOH A 602 2.19 REMARK 500 OD1 ASP B 350 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 43.53 39.52 REMARK 500 ALA A 205 73.48 -152.67 REMARK 500 TRP A 262 51.34 -90.13 REMARK 500 HIS A 271 -80.85 80.41 REMARK 500 ASP A 322 176.71 69.01 REMARK 500 SER A 326 58.20 -140.26 REMARK 500 ASN A 327 -59.91 -147.59 REMARK 500 MET A 352 119.76 -170.86 REMARK 500 THR A 362 -84.01 -120.63 REMARK 500 ASP B 42 -132.80 52.24 REMARK 500 VAL B 78 42.56 38.40 REMARK 500 ALA B 205 75.04 -152.21 REMARK 500 HIS B 271 -81.58 80.46 REMARK 500 ASP B 322 175.82 67.79 REMARK 500 ASN B 327 -59.73 -147.86 REMARK 500 MET B 352 123.04 -170.49 REMARK 500 THR B 362 -83.39 -121.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 214 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 68 NE2 REMARK 620 2 HIS A 70 NE2 107.4 REMARK 620 3 HIS A 234 NE2 89.4 96.3 REMARK 620 4 ASP A 322 OD1 88.5 92.4 171.3 REMARK 620 5 HOH A 688 O 125.7 126.5 90.7 83.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 68 NE2 REMARK 620 2 HIS B 70 NE2 104.8 REMARK 620 3 HIS B 234 NE2 91.1 97.2 REMARK 620 4 ASP B 322 OD1 85.2 95.2 167.6 REMARK 620 5 HOH B 619 O 122.0 132.0 92.2 79.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7WW2 RELATED DB: PDB DBREF1 8IS4 A 1 455 UNP A0A4Q9D6T1_9GAMM DBREF2 8IS4 A A0A4Q9D6T1 1 455 DBREF1 8IS4 B 1 455 UNP A0A4Q9D6T1_9GAMM DBREF2 8IS4 B A0A4Q9D6T1 1 455 SEQRES 1 A 455 MET HIS LYS ARG THR LEU LEU PHE LYS ASN ALA GLU LEU SEQRES 2 A 455 LEU VAL THR MET ASP ASP GLU ARG ARG GLU ILE ARG GLY SEQRES 3 A 455 GLY CYS LEU LEU VAL GLU GLY ASN ARG ILE VAL ALA VAL SEQRES 4 A 455 GLY GLY ASP GLU LEU CYS ALA ALA PRO ALA ASP GLU GLU SEQRES 5 A 455 ILE ASP LEU ARG GLY HIS ILE VAL ILE PRO GLY LEU ILE SEQRES 6 A 455 ASN THR HIS HIS HIS MET PHE GLN SER LEU THR ARG VAL SEQRES 7 A 455 ILE PRO ASP ALA GLN ASP GLY GLU LEU PHE ASP TRP LEU SEQRES 8 A 455 ASN ASN LEU TYR PRO ILE TRP ALA GLY LEU THR PRO GLU SEQRES 9 A 455 MET ILE ARG ILE SER THR GLN THR ALA MET ALA GLU LEU SEQRES 10 A 455 MET LEU SER GLY CYS THR THR SER SER ASP HIS LEU TYR SEQRES 11 A 455 VAL TYR PRO ASN GLY CYS ARG LEU ASP ASP SER ILE ASP SEQRES 12 A 455 GLY ALA ARG GLU ILE GLY MET ARG PHE HIS ALA CYS ARG SEQRES 13 A 455 GLY SER MET SER VAL GLY ARG SER LYS GLY GLY LEU PRO SEQRES 14 A 455 PRO ASP GLU LEU VAL GLU ASN GLU GLN ALA ILE LEU GLU SEQRES 15 A 455 ASP SER LEU ARG LEU ILE HIS SER TYR HIS ASP ALA GLN SEQRES 16 A 455 ARG TYR SER MET LEU ARG ILE ALA LEU ALA PRO CYS SER SEQRES 17 A 455 PRO PHE SER VAL SER ARG GLU LEU MET VAL LYS THR ALA SEQRES 18 A 455 GLN MET ALA ARG GLU GLN GLY VAL SER LEU HIS THR HIS SEQRES 19 A 455 LEU ALA GLU ASN ASP SER ASP VAL SER TYR SER GLN THR SEQRES 20 A 455 HIS PHE GLY MET THR PRO ALA GLN TYR ALA GLU ASP LEU SEQRES 21 A 455 GLY TRP VAL GLY SER ASP VAL TRP HIS ALA HIS CYS VAL SEQRES 22 A 455 LYS LEU ASP ARG ALA GLY ILE SER LEU PHE ALA ARG THR SEQRES 23 A 455 GLY THR GLY VAL ALA HIS CYS PRO CYS SER ASN MET ARG SEQRES 24 A 455 LEU ALA SER GLY ILE ALA PRO ILE ARG ALA MET LEU ASP SEQRES 25 A 455 GLU GLY VAL SER VAL GLY LEU GLY VAL ASP GLY SER ALA SEQRES 26 A 455 SER ASN ASP ALA GLY ASN MET ILE ALA GLU THR ARG GLN SEQRES 27 A 455 ALA MET LEU LEU GLN ARG VAL GLY PHE GLY PRO ASP ALA SEQRES 28 A 455 MET ASN ALA ARG GLN ALA LEU GLU ILE ALA THR ARG GLY SEQRES 29 A 455 GLY ALA LYS VAL LEU ASN ARG ASP ASP ILE GLY TYR LEU SEQRES 30 A 455 ALA THR GLY MET ALA ALA ASP PHE VAL ALA PHE ASP LEU SEQRES 31 A 455 ASN THR LEU ASN LEU ALA GLY ALA LYS HIS ASP PRO LEU SEQRES 32 A 455 ALA ALA LEU VAL PHE CYS THR PRO GLY ASN VAL ALA PHE SEQRES 33 A 455 SER VAL ILE ASN GLY GLN VAL VAL ILE ARG GLU GLY VAL SEQRES 34 A 455 LEU GLN THR ILE ASP LEU PRO SER VAL VAL GLN GLN HIS SEQRES 35 A 455 ASN ARG LEU ALA CYS LEU LEU VAL ASN ARG HIS ARG LEU SEQRES 1 B 455 MET HIS LYS ARG THR LEU LEU PHE LYS ASN ALA GLU LEU SEQRES 2 B 455 LEU VAL THR MET ASP ASP GLU ARG ARG GLU ILE ARG GLY SEQRES 3 B 455 GLY CYS LEU LEU VAL GLU GLY ASN ARG ILE VAL ALA VAL SEQRES 4 B 455 GLY GLY ASP GLU LEU CYS ALA ALA PRO ALA ASP GLU GLU SEQRES 5 B 455 ILE ASP LEU ARG GLY HIS ILE VAL ILE PRO GLY LEU ILE SEQRES 6 B 455 ASN THR HIS HIS HIS MET PHE GLN SER LEU THR ARG VAL SEQRES 7 B 455 ILE PRO ASP ALA GLN ASP GLY GLU LEU PHE ASP TRP LEU SEQRES 8 B 455 ASN ASN LEU TYR PRO ILE TRP ALA GLY LEU THR PRO GLU SEQRES 9 B 455 MET ILE ARG ILE SER THR GLN THR ALA MET ALA GLU LEU SEQRES 10 B 455 MET LEU SER GLY CYS THR THR SER SER ASP HIS LEU TYR SEQRES 11 B 455 VAL TYR PRO ASN GLY CYS ARG LEU ASP ASP SER ILE ASP SEQRES 12 B 455 GLY ALA ARG GLU ILE GLY MET ARG PHE HIS ALA CYS ARG SEQRES 13 B 455 GLY SER MET SER VAL GLY ARG SER LYS GLY GLY LEU PRO SEQRES 14 B 455 PRO ASP GLU LEU VAL GLU ASN GLU GLN ALA ILE LEU GLU SEQRES 15 B 455 ASP SER LEU ARG LEU ILE HIS SER TYR HIS ASP ALA GLN SEQRES 16 B 455 ARG TYR SER MET LEU ARG ILE ALA LEU ALA PRO CYS SER SEQRES 17 B 455 PRO PHE SER VAL SER ARG GLU LEU MET VAL LYS THR ALA SEQRES 18 B 455 GLN MET ALA ARG GLU GLN GLY VAL SER LEU HIS THR HIS SEQRES 19 B 455 LEU ALA GLU ASN ASP SER ASP VAL SER TYR SER GLN THR SEQRES 20 B 455 HIS PHE GLY MET THR PRO ALA GLN TYR ALA GLU ASP LEU SEQRES 21 B 455 GLY TRP VAL GLY SER ASP VAL TRP HIS ALA HIS CYS VAL SEQRES 22 B 455 LYS LEU ASP ARG ALA GLY ILE SER LEU PHE ALA ARG THR SEQRES 23 B 455 GLY THR GLY VAL ALA HIS CYS PRO CYS SER ASN MET ARG SEQRES 24 B 455 LEU ALA SER GLY ILE ALA PRO ILE ARG ALA MET LEU ASP SEQRES 25 B 455 GLU GLY VAL SER VAL GLY LEU GLY VAL ASP GLY SER ALA SEQRES 26 B 455 SER ASN ASP ALA GLY ASN MET ILE ALA GLU THR ARG GLN SEQRES 27 B 455 ALA MET LEU LEU GLN ARG VAL GLY PHE GLY PRO ASP ALA SEQRES 28 B 455 MET ASN ALA ARG GLN ALA LEU GLU ILE ALA THR ARG GLY SEQRES 29 B 455 GLY ALA LYS VAL LEU ASN ARG ASP ASP ILE GLY TYR LEU SEQRES 30 B 455 ALA THR GLY MET ALA ALA ASP PHE VAL ALA PHE ASP LEU SEQRES 31 B 455 ASN THR LEU ASN LEU ALA GLY ALA LYS HIS ASP PRO LEU SEQRES 32 B 455 ALA ALA LEU VAL PHE CYS THR PRO GLY ASN VAL ALA PHE SEQRES 33 B 455 SER VAL ILE ASN GLY GLN VAL VAL ILE ARG GLU GLY VAL SEQRES 34 B 455 LEU GLN THR ILE ASP LEU PRO SER VAL VAL GLN GLN HIS SEQRES 35 B 455 ASN ARG LEU ALA CYS LEU LEU VAL ASN ARG HIS ARG LEU HET URF A 501 9 HET ZN A 502 1 HET GOL B 501 6 HET URF B 502 9 HET TRS B 503 8 HET ZN B 504 1 HETNAM URF 5-FLUOROURACIL HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 URF 2(C4 H3 F N2 O2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 9 HOH *570(H2 O) HELIX 1 AA1 GLY A 41 ALA A 47 5 7 HELIX 2 AA2 HIS A 70 THR A 76 5 7 HELIX 3 AA3 ILE A 79 GLN A 83 5 5 HELIX 4 AA4 GLU A 86 ALA A 99 1 14 HELIX 5 AA5 THR A 102 SER A 120 1 19 HELIX 6 AA6 TYR A 132 CYS A 136 5 5 HELIX 7 AA7 ARG A 137 GLY A 149 1 13 HELIX 8 AA8 GLY A 162 GLY A 166 5 5 HELIX 9 AA9 PRO A 170 VAL A 174 5 5 HELIX 10 AB1 ASN A 176 HIS A 192 1 17 HELIX 11 AB2 SER A 213 GLY A 228 1 16 HELIX 12 AB3 ASN A 238 GLY A 250 1 13 HELIX 13 AB4 THR A 252 LEU A 260 1 9 HELIX 14 AB5 ASP A 276 GLY A 287 1 12 HELIX 15 AB6 CYS A 293 LEU A 300 1 8 HELIX 16 AB7 PRO A 306 GLY A 314 1 9 HELIX 17 AB8 ASN A 331 GLY A 348 1 18 HELIX 18 AB9 ASN A 353 THR A 362 1 10 HELIX 19 AC1 THR A 362 LEU A 369 1 8 HELIX 20 AC2 THR A 392 ALA A 396 5 5 HELIX 21 AC3 ASP A 401 CYS A 409 1 9 HELIX 22 AC4 ASP A 434 ASN A 451 1 18 HELIX 23 AC5 GLY B 41 ALA B 47 5 7 HELIX 24 AC6 HIS B 70 THR B 76 5 7 HELIX 25 AC7 ILE B 79 GLN B 83 5 5 HELIX 26 AC8 GLU B 86 ALA B 99 1 14 HELIX 27 AC9 THR B 102 SER B 120 1 19 HELIX 28 AD1 ARG B 137 GLY B 149 1 13 HELIX 29 AD2 GLY B 162 GLY B 166 5 5 HELIX 30 AD3 PRO B 170 VAL B 174 5 5 HELIX 31 AD4 ASN B 176 HIS B 192 1 17 HELIX 32 AD5 SER B 213 GLY B 228 1 16 HELIX 33 AD6 ASN B 238 GLY B 250 1 13 HELIX 34 AD7 THR B 252 LEU B 260 1 9 HELIX 35 AD8 ASP B 276 GLY B 287 1 12 HELIX 36 AD9 CYS B 293 LEU B 300 1 8 HELIX 37 AE1 PRO B 306 GLU B 313 1 8 HELIX 38 AE2 ASN B 331 GLY B 348 1 18 HELIX 39 AE3 ASN B 353 THR B 362 1 10 HELIX 40 AE4 THR B 362 LEU B 369 1 8 HELIX 41 AE5 THR B 392 ALA B 396 5 5 HELIX 42 AE6 ASP B 401 CYS B 409 1 9 HELIX 43 AE7 ASP B 434 ASN B 451 1 18 SHEET 1 AA1 4 ARG A 35 GLY A 40 0 SHEET 2 AA1 4 CYS A 28 GLU A 32 -1 N CYS A 28 O GLY A 40 SHEET 3 AA1 4 THR A 5 LYS A 9 -1 N LEU A 6 O VAL A 31 SHEET 4 AA1 4 GLU A 51 ASP A 54 1 O ILE A 53 N LEU A 7 SHEET 1 AA2 7 GLU A 23 ILE A 24 0 SHEET 2 AA2 7 LEU A 13 VAL A 15 -1 N LEU A 14 O ILE A 24 SHEET 3 AA2 7 HIS A 58 PRO A 62 1 O VAL A 60 N VAL A 15 SHEET 4 AA2 7 PHE A 385 ASP A 389 -1 O PHE A 388 N ILE A 59 SHEET 5 AA2 7 PHE A 416 ILE A 419 -1 O VAL A 418 N PHE A 385 SHEET 6 AA2 7 GLN A 422 ARG A 426 -1 O GLN A 422 N ILE A 419 SHEET 7 AA2 7 VAL A 429 LEU A 430 -1 O VAL A 429 N ARG A 426 SHEET 1 AA3 9 LEU A 64 ASN A 66 0 SHEET 2 AA3 9 CYS A 122 LEU A 129 1 O THR A 123 N LEU A 64 SHEET 3 AA3 9 ARG A 151 SER A 158 1 O ARG A 151 N SER A 125 SHEET 4 AA3 9 LEU A 200 PRO A 206 1 O ALA A 203 N ARG A 156 SHEET 5 AA3 9 SER A 230 LEU A 235 1 O HIS A 232 N LEU A 204 SHEET 6 AA3 9 VAL A 267 HIS A 271 1 O ALA A 270 N THR A 233 SHEET 7 AA3 9 GLY A 289 HIS A 292 1 O ALA A 291 N HIS A 271 SHEET 8 AA3 9 SER A 316 LEU A 319 1 O GLY A 318 N VAL A 290 SHEET 9 AA3 9 LEU A 64 ASN A 66 1 N ILE A 65 O LEU A 319 SHEET 1 AA4 4 ARG B 35 GLY B 40 0 SHEET 2 AA4 4 GLU B 23 GLU B 32 -1 N CYS B 28 O GLY B 40 SHEET 3 AA4 4 THR B 5 VAL B 15 -1 N LEU B 6 O VAL B 31 SHEET 4 AA4 4 GLU B 51 ASP B 54 1 O ILE B 53 N LEU B 7 SHEET 1 AA5 8 ARG B 35 GLY B 40 0 SHEET 2 AA5 8 GLU B 23 GLU B 32 -1 N CYS B 28 O GLY B 40 SHEET 3 AA5 8 THR B 5 VAL B 15 -1 N LEU B 6 O VAL B 31 SHEET 4 AA5 8 HIS B 58 PRO B 62 1 O VAL B 60 N VAL B 15 SHEET 5 AA5 8 PHE B 385 ASP B 389 -1 O PHE B 388 N ILE B 59 SHEET 6 AA5 8 PHE B 416 ILE B 419 -1 O VAL B 418 N PHE B 385 SHEET 7 AA5 8 GLN B 422 ARG B 426 -1 O GLN B 422 N ILE B 419 SHEET 8 AA5 8 VAL B 429 LEU B 430 -1 O VAL B 429 N ARG B 426 SHEET 1 AA6 9 LEU B 64 ASN B 66 0 SHEET 2 AA6 9 CYS B 122 LEU B 129 1 O THR B 124 N ASN B 66 SHEET 3 AA6 9 ARG B 151 SER B 158 1 O ARG B 151 N SER B 125 SHEET 4 AA6 9 LEU B 200 PRO B 206 1 O ALA B 203 N ARG B 156 SHEET 5 AA6 9 SER B 230 LEU B 235 1 O SER B 230 N LEU B 204 SHEET 6 AA6 9 VAL B 267 HIS B 271 1 O ALA B 270 N THR B 233 SHEET 7 AA6 9 GLY B 289 HIS B 292 1 O ALA B 291 N HIS B 271 SHEET 8 AA6 9 SER B 316 LEU B 319 1 O GLY B 318 N VAL B 290 SHEET 9 AA6 9 LEU B 64 ASN B 66 1 N ILE B 65 O LEU B 319 SSBOND 1 CYS B 28 CYS B 45 1555 1555 2.04 LINK NE2 HIS A 68 ZN ZN A 502 1555 1555 2.19 LINK NE2 HIS A 70 ZN ZN A 502 1555 1555 2.20 LINK NE2 HIS A 234 ZN ZN A 502 1555 1555 2.23 LINK OD1 ASP A 322 ZN ZN A 502 1555 1555 2.47 LINK ZN ZN A 502 O HOH A 688 1555 1555 2.02 LINK NE2 HIS B 68 ZN ZN B 504 1555 1555 2.20 LINK NE2 HIS B 70 ZN ZN B 504 1555 1555 2.18 LINK NE2 HIS B 234 ZN ZN B 504 1555 1555 2.22 LINK OD1 ASP B 322 ZN ZN B 504 1555 1555 2.39 LINK ZN ZN B 504 O HOH B 619 1555 1555 2.10 CISPEP 1 ASN A 327 ASP A 328 0 1.48 CISPEP 2 ASN B 327 ASP B 328 0 0.86 CRYST1 68.388 107.986 120.571 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008294 0.00000 MTRIX1 1 -0.993624 -0.112149 -0.011552 -5.29904 1 MTRIX2 1 -0.112719 0.986072 0.122293 3.06791 1 MTRIX3 1 -0.002324 0.122816 -0.992427 -54.87244 1