HEADER ISOMERASE 22-MAR-23 8ITG TITLE CRYSTAL STRUCTURE OF LASSO PEPTIDE EPIMERASE MSLH IN COMPLEXED WITH TITLE 2 PRECURSOR PEPTIDE VARIANT MSLAW21G COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-GAMMA-GLUTAMATE SYNTHESIS PROTEIN (CAPSULE COMPND 3 BIOSYNTHESIS PROTEIN); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRICYCLIC PEPTIDE MS-271; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEORUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 67304; SOURCE 4 GENE: EV578_104528; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEORUBIGINOSUS; SOURCE 9 ORGANISM_TAXID: 67304; SOURCE 10 GENE: DWG14_02265; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EPIMERASE, MSLH, MSLA, LASSO PEPTIDE, RIPPS, MS-271, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,M.HIROYUKI REVDAT 3 23-AUG-23 8ITG 1 JRNL REVDAT 2 16-AUG-23 8ITG 1 JRNL REVDAT 1 21-JUN-23 8ITG 0 JRNL AUTH Y.NAKASHIMA,A.KAWAKAMI,Y.OGASAWARA,M.MAEKI,M.TOKESHI, JRNL AUTH 2 T.DAIRI,H.MORITA JRNL TITL STRUCTURE OF LASSO PEPTIDE EPIMERASE MSLH REVEALS JRNL TITL 2 METAL-DEPENDENT ACID/BASE CATALYTIC MECHANISM. JRNL REF NAT COMMUN V. 14 4752 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37550286 JRNL DOI 10.1038/S41467-023-40232-X REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9800 - 5.4200 0.99 2395 153 0.2058 0.2275 REMARK 3 2 5.4200 - 4.3000 1.00 2291 144 0.1593 0.1690 REMARK 3 3 4.3000 - 3.7600 1.00 2258 143 0.1528 0.1811 REMARK 3 4 3.7600 - 3.4200 1.00 2268 143 0.1575 0.1875 REMARK 3 5 3.4200 - 3.1700 1.00 2242 142 0.1682 0.1857 REMARK 3 6 3.1700 - 2.9800 1.00 2252 136 0.1827 0.2155 REMARK 3 7 2.9800 - 2.8300 1.00 2225 139 0.1823 0.2088 REMARK 3 8 2.8300 - 2.7100 1.00 2229 151 0.1926 0.2445 REMARK 3 9 2.7100 - 2.6100 1.00 2222 136 0.2055 0.2253 REMARK 3 10 2.6100 - 2.5200 1.00 2228 141 0.2164 0.2414 REMARK 3 11 2.5200 - 2.4400 1.00 2216 140 0.2259 0.2704 REMARK 3 12 2.4400 - 2.3700 1.00 2195 147 0.2369 0.2577 REMARK 3 13 2.3700 - 2.3100 1.00 2224 136 0.2372 0.2781 REMARK 3 14 2.3100 - 2.2500 1.00 2201 144 0.2424 0.2415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.717 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3486 REMARK 3 ANGLE : 0.542 4753 REMARK 3 CHIRALITY : 0.042 534 REMARK 3 PLANARITY : 0.004 642 REMARK 3 DIHEDRAL : 22.989 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1270 15.2197 63.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.3026 REMARK 3 T33: 0.2953 T12: -0.0003 REMARK 3 T13: 0.0003 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8944 L22: 0.4697 REMARK 3 L33: 0.8457 L12: -0.0807 REMARK 3 L13: -0.1358 L23: -0.2535 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0752 S13: -0.0483 REMARK 3 S21: -0.0404 S22: -0.0663 S23: 0.0559 REMARK 3 S31: 0.0078 S32: -0.0789 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2040 19.4903 77.5112 REMARK 3 T TENSOR REMARK 3 T11: 0.3143 T22: 0.4013 REMARK 3 T33: 0.3194 T12: -0.0142 REMARK 3 T13: -0.0126 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.2560 L22: 0.4686 REMARK 3 L33: 0.5455 L12: -0.3102 REMARK 3 L13: -0.3074 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.1208 S13: -0.0637 REMARK 3 S21: 0.1614 S22: -0.0243 S23: -0.1431 REMARK 3 S31: 0.1578 S32: 0.2377 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9288 30.8977 97.4593 REMARK 3 T TENSOR REMARK 3 T11: 0.8796 T22: 0.8067 REMARK 3 T33: 0.7991 T12: -0.0136 REMARK 3 T13: 0.1863 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 0.2515 L22: 1.5986 REMARK 3 L33: 1.7913 L12: 0.1775 REMARK 3 L13: 0.1507 L23: -1.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.6284 S12: 0.0570 S13: -0.1321 REMARK 3 S21: -0.1802 S22: -0.5557 S23: -1.3851 REMARK 3 S31: 0.2987 S32: 1.0826 S33: -0.5734 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7191 31.1343 80.2976 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.6568 REMARK 3 T33: 0.5239 T12: -0.1545 REMARK 3 T13: -0.0046 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0188 L22: 0.0611 REMARK 3 L33: 0.0221 L12: 0.0263 REMARK 3 L13: 0.0015 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.2660 S12: 0.1198 S13: -0.1070 REMARK 3 S21: 0.3873 S22: -0.0166 S23: -0.3706 REMARK 3 S31: 0.3083 S32: 0.6122 S33: 0.0022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4845 23.1005 63.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.3081 REMARK 3 T33: 0.3090 T12: -0.0260 REMARK 3 T13: 0.0120 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.9552 L22: 0.4288 REMARK 3 L33: 1.0677 L12: 0.6095 REMARK 3 L13: 0.2929 L23: -0.4485 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0926 S13: 0.2165 REMARK 3 S21: -0.0115 S22: -0.0814 S23: -0.0498 REMARK 3 S31: -0.1680 S32: 0.0551 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0684 28.2254 47.9209 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.4424 REMARK 3 T33: 0.3841 T12: -0.0113 REMARK 3 T13: 0.0353 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 0.4267 L22: 0.5031 REMARK 3 L33: 0.4517 L12: 0.4594 REMARK 3 L13: 0.0477 L23: -0.1662 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.0673 S13: 0.2533 REMARK 3 S21: -0.1053 S22: 0.0209 S23: 0.0573 REMARK 3 S31: -0.3477 S32: -0.1255 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9704 31.0159 73.5116 REMARK 3 T TENSOR REMARK 3 T11: 1.4599 T22: 1.3783 REMARK 3 T33: 1.3410 T12: -0.4086 REMARK 3 T13: 0.2791 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.0001 REMARK 3 L33: 0.0108 L12: 0.0126 REMARK 3 L13: -0.0069 L23: 0.0040 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0108 S13: -0.0018 REMARK 3 S21: -0.0081 S22: 0.0352 S23: -0.2974 REMARK 3 S31: -0.1439 S32: -0.0640 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ITG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 45.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM CHLORIDE, 100 MM TRIS REMARK 280 -HCL (PH 9.0), 34% (W/V) PEG400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.61600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.30550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.61600 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.30550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.61600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 85.30550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.61600 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 85.30550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.61600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 85.30550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.61600 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 85.30550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.61600 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 85.30550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.61600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.61600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.30550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 115820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 170.61100 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 170.61100 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 170.61100 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 170.61100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 828 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 440 REMARK 465 MET B -20 REMARK 465 SER B -19 REMARK 465 ALA B -18 REMARK 465 VAL B -17 REMARK 465 TYR B -16 REMARK 465 GLU B -15 REMARK 465 PRO B -14 REMARK 465 PRO B -13 REMARK 465 MET B -12 REMARK 465 LEU B -11 REMARK 465 GLN B -10 REMARK 465 GLU B -9 REMARK 465 VAL B -8 REMARK 465 GLY B -7 REMARK 465 ASP B -6 REMARK 465 PHE B -5 REMARK 465 ASP B -4 REMARK 465 GLU B -3 REMARK 465 LEU B -2 REMARK 465 THR B -1 REMARK 465 LYS B 0 REMARK 465 CYS B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 CYS B 7 REMARK 465 ASN B 8 REMARK 465 ASP B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 VAL B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 235 CD NE CZ NH1 NH2 REMARK 470 GLU A 272 CD OE1 OE2 REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 439 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 835 O HOH B 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 55.27 -96.06 REMARK 500 VAL A 45 146.96 -170.19 REMARK 500 LEU A 355 -149.78 64.65 REMARK 500 CYS B 13 -5.34 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE2 REMARK 620 2 ASN A 87 OD1 86.3 REMARK 620 3 HOH A 720 O 91.9 171.2 REMARK 620 4 GLY B 21 O 87.7 95.7 92.9 REMARK 620 N 1 2 3 DBREF1 8ITG A 1 440 UNP A0A4V2TW40_9ACTN DBREF2 8ITG A A0A4V2TW40 1 440 DBREF1 8ITG B -20 20 UNP A0A385ZG42_9ACTN DBREF2 8ITG B A0A385ZG42 1 41 SEQADV 8ITG ARG A 34 UNP A0A4V2TW4 HIS 34 CONFLICT SEQADV 8ITG VAL A 59 UNP A0A4V2TW4 ALA 59 CONFLICT SEQADV 8ITG MET A 101 UNP A0A4V2TW4 LEU 101 CONFLICT SEQADV 8ITG HIS A 287 UNP A0A4V2TW4 ASP 287 CONFLICT SEQADV 8ITG ALA A 380 UNP A0A4V2TW4 VAL 380 CONFLICT SEQADV 8ITG ILE A 425 UNP A0A4V2TW4 VAL 425 CONFLICT SEQADV 8ITG GLY B 21 UNP A0A385ZG4 EXPRESSION TAG SEQRES 1 A 440 MET THR ARG LEU THR VAL ALA LEU SER GLY ASP CYS MET SEQRES 2 A 440 VAL THR ARG GLY GLY LEU ILE THR SER ASP PRO ALA ALA SEQRES 3 A 440 GLU ARG LEU ARG ASP LEU LEU ARG GLY THR ASP PHE ALA SEQRES 4 A 440 VAL THR ASN LEU GLU VAL VAL PRO SER ASP GLY ARG GLY SEQRES 5 A 440 HIS PRO VAL HIS ASN ALA VAL GLY GLY GLY CYS LEU ILE SEQRES 6 A 440 ALA ASP SER ALA VAL LEU ASP GLU VAL THR ALA ALA GLY SEQRES 7 A 440 PHE SER VAL LEU GLY CYS ALA ASN ASN HIS ALA MET ASP SEQRES 8 A 440 LEU GLY THR GLU GLY VAL LEU GLY THR MET ASP LEU LEU SEQRES 9 A 440 ARG ALA ARG GLY ILE PRO TYR ALA GLY ILE GLY ALA ASP SEQRES 10 A 440 LEU THR GLY ALA ARG ARG PRO VAL TYR ALA ASP ARG PRO SEQRES 11 A 440 GLY GLY SER LEU ALA LEU LEU SER CYS THR ALA THR PHE SEQRES 12 A 440 LEU PRO GLY GLN GLU ALA ALA ASP PRO SER PRO GLU LEU SEQRES 13 A 440 PRO GLY ARG PRO GLY LEU ASN PRO LEU ARG HIS THR ALA SEQRES 14 A 440 THR MET GLN VAL THR ALA ASP GLN MET ASP VAL LEU ARG SEQRES 15 A 440 THR ILE ASP ALA GLU THR GLY LEU ARG ALA ARG ARG ALA SEQRES 16 A 440 GLU ALA ARG ALA LEU LEU GLY VAL ASP PRO ALA LEU LEU SEQRES 17 A 440 GLY PRO ASP ARG LEU ALA LEU PHE GLY THR ARG PHE ARG SEQRES 18 A 440 THR ALA ASP ALA PRO GLY PHE THR THR GLU CYS ASP PRO SEQRES 19 A 440 ARG ASP LEU ASP GLU ILE ALA ARG TRP VAL GLY GLU ALA SEQRES 20 A 440 ARG LEU ARG ALA ASP LEU VAL VAL VAL SER VAL HIS SER SEQRES 21 A 440 HIS GLU PRO GLY PRO THR PRO GLU THR PRO GLY GLU PHE SEQRES 22 A 440 LEU ARG VAL PHE ALA HIS ARG MET ILE ASP GLU GLY ALA SEQRES 23 A 440 HIS ALA VAL VAL GLY HIS GLY PRO HIS PHE LEU ARG GLY SEQRES 24 A 440 VAL GLU LEU TYR ARG ASN LYS PRO ILE PHE TYR SER LEU SEQRES 25 A 440 GLY ASN ILE VAL SER GLN ILE GLU LEU THR ASP ARG VAL SEQRES 26 A 440 SER ALA GLU ASP TYR ALA LYS VAL THR ALA GLU ARG PRO SEQRES 27 A 440 LEU THR PRO GLY ARG TYR TYR ASP ARG LEU SER GLY HIS SEQRES 28 A 440 GLY THR ARG LEU PHE ALA PRO HIS ARG ARG TYR TRP GLN SEQRES 29 A 440 SER LEU VAL PRO VAL LEU THR PHE GLU ASP GLY THR LEU SEQRES 30 A 440 THR ALA ALA ARG LEU HIS PRO VAL ASP LEU GLY PHE GLY SEQRES 31 A 440 ARG PRO VAL HIS ARG ARG GLY ARG PRO ARG LEU ALA ASP SEQRES 32 A 440 ARG ALA GLU ALA GLU LYS THR LEU THR ASP VAL ALA GLN SEQRES 33 A 440 LEU SER GLN PRO TYR GLY THR ALA ILE GLU VAL MET ASP SEQRES 34 A 440 ASP GLY THR GLY GLU LEU ALA LEU ASP VAL ALA SEQRES 1 B 42 MET SER ALA VAL TYR GLU PRO PRO MET LEU GLN GLU VAL SEQRES 2 B 42 GLY ASP PHE ASP GLU LEU THR LYS CYS LEU GLY VAL GLY SEQRES 3 B 42 SER CYS ASN ASP PHE ALA GLY CYS GLY TYR ALA ILE VAL SEQRES 4 B 42 CYS PHE GLY HET TRS A 601 8 HET CA A 602 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM CA CALCIUM ION HETSYN TRS TRIS BUFFER FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 CA CA 2+ FORMUL 5 HOH *214(H2 O) HELIX 1 AA1 ASP A 23 GLY A 35 1 13 HELIX 2 AA2 ALA A 69 GLY A 78 1 10 HELIX 3 AA3 LEU A 92 ARG A 107 1 16 HELIX 4 AA4 ASP A 117 ARG A 123 1 7 HELIX 5 AA5 THR A 174 THR A 188 1 15 HELIX 6 AA6 ARG A 191 ARG A 193 5 3 HELIX 7 AA7 ARG A 194 GLY A 202 1 9 HELIX 8 AA8 ASP A 233 ALA A 251 1 19 HELIX 9 AA9 GLY A 271 GLU A 284 1 14 HELIX 10 AB1 ILE A 319 THR A 322 5 4 HELIX 11 AB2 SER A 326 ALA A 331 1 6 HELIX 12 AB3 THR A 340 SER A 349 1 10 HELIX 13 AB4 HIS A 359 TYR A 362 5 4 HELIX 14 AB5 ASP A 403 GLN A 419 1 17 HELIX 15 AB6 PRO A 420 GLY A 422 5 3 SHEET 1 AA1 7 TYR A 111 ALA A 112 0 SHEET 2 AA1 7 VAL A 81 GLY A 83 1 N LEU A 82 O ALA A 112 SHEET 3 AA1 7 PHE A 38 LEU A 43 1 N THR A 41 O GLY A 83 SHEET 4 AA1 7 ARG A 3 ALA A 7 1 N ALA A 7 O PHE A 38 SHEET 5 AA1 7 GLN A 364 GLU A 373 -1 O LEU A 370 N VAL A 6 SHEET 6 AA1 7 THR A 376 ASP A 386 -1 O VAL A 385 N SER A 365 SHEET 7 AA1 7 ARG A 400 LEU A 401 -1 O ARG A 400 N ASP A 386 SHEET 1 AA2 8 ASN A 314 SER A 317 0 SHEET 2 AA2 8 ASP A 11 MET A 13 1 N ASP A 11 O ILE A 315 SHEET 3 AA2 8 PHE A 38 LEU A 43 1 O ASN A 42 N CYS A 12 SHEET 4 AA2 8 ARG A 3 ALA A 7 1 N ALA A 7 O PHE A 38 SHEET 5 AA2 8 GLN A 364 GLU A 373 -1 O LEU A 370 N VAL A 6 SHEET 6 AA2 8 THR A 376 ASP A 386 -1 O VAL A 385 N SER A 365 SHEET 7 AA2 8 GLY A 433 LEU A 435 -1 O GLY A 433 N LEU A 382 SHEET 8 AA2 8 ILE A 425 VAL A 427 -1 N GLU A 426 O GLU A 434 SHEET 1 AA3 2 VAL A 46 SER A 48 0 SHEET 2 AA3 2 ILE A 65 ASP A 67 1 O ALA A 66 N VAL A 46 SHEET 1 AA4 2 ILE A 114 GLY A 115 0 SHEET 2 AA4 2 GLY A 161 LEU A 162 -1 O GLY A 161 N GLY A 115 SHEET 1 AA5 6 VAL A 125 ARG A 129 0 SHEET 2 AA5 6 GLY A 132 THR A 140 -1 O LEU A 134 N ALA A 127 SHEET 3 AA5 6 LEU A 253 HIS A 259 1 O LEU A 253 N ALA A 135 SHEET 4 AA5 6 ALA A 288 HIS A 292 1 O VAL A 290 N VAL A 256 SHEET 5 AA5 6 LYS A 306 PHE A 309 1 O PHE A 309 N GLY A 291 SHEET 6 AA5 6 VAL A 300 TYR A 303 -1 N GLU A 301 O ILE A 308 SHEET 1 AA6 4 ARG A 212 LEU A 215 0 SHEET 2 AA6 4 THR A 218 THR A 222 -1 O PHE A 220 N LEU A 213 SHEET 3 AA6 4 HIS A 167 VAL A 173 1 N MET A 171 O ARG A 219 SHEET 4 AA6 4 GLY A 227 CYS A 232 -1 O THR A 229 N THR A 170 SSBOND 1 CYS B 13 CYS B 19 1555 1555 2.04 LINK OE2 GLU A 44 CA CA A 602 1555 1555 2.22 LINK OD1 ASN A 87 CA CA A 602 1555 1555 2.28 LINK CA CA A 602 O HOH A 720 1555 1555 2.29 LINK CA CA A 602 O GLY B 21 1555 1555 2.55 CRYST1 127.232 127.232 170.611 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005861 0.00000