HEADER ISOMERASE 22-MAR-23 8ITH TITLE CRYSTAL STRUCTURE OF LASSO PEPTIDE EPIMERASE MSLH H295N COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-GAMMA-GLUTAMATE SYNTHESIS PROTEIN (CAPSULE COMPND 3 BIOSYNTHESIS PROTEIN); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEORUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 67304; SOURCE 4 GENE: EV578_104528; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EPIMERASE, MSLH, MSLA, LASSO PEPTIDE, RIPPS, MS-271, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,M.HIROYUKI REVDAT 3 23-AUG-23 8ITH 1 JRNL REVDAT 2 16-AUG-23 8ITH 1 JRNL REVDAT 1 21-JUN-23 8ITH 0 JRNL AUTH Y.NAKASHIMA,A.KAWAKAMI,Y.OGASAWARA,M.MAEKI,M.TOKESHI, JRNL AUTH 2 T.DAIRI,H.MORITA JRNL TITL STRUCTURE OF LASSO PEPTIDE EPIMERASE MSLH REVEALS JRNL TITL 2 METAL-DEPENDENT ACID/BASE CATALYTIC MECHANISM. JRNL REF NAT COMMUN V. 14 4752 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37550286 JRNL DOI 10.1038/S41467-023-40232-X REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 43288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.670 REMARK 3 FREE R VALUE TEST SET COUNT : 3755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2200 - 7.6400 0.95 1434 150 0.1716 0.1956 REMARK 3 2 7.6300 - 6.0700 0.97 1469 116 0.1953 0.2149 REMARK 3 3 6.0700 - 5.3000 0.97 1459 142 0.1890 0.2245 REMARK 3 4 5.3000 - 4.8200 0.97 1454 140 0.1520 0.1868 REMARK 3 5 4.8200 - 4.4700 0.98 1460 135 0.1485 0.1822 REMARK 3 6 4.4700 - 4.2100 0.98 1490 129 0.1398 0.1609 REMARK 3 7 4.2100 - 4.0000 0.98 1464 141 0.1435 0.1594 REMARK 3 8 4.0000 - 3.8200 0.98 1468 160 0.1508 0.1913 REMARK 3 9 3.8200 - 3.6800 0.98 1451 139 0.1594 0.1667 REMARK 3 10 3.6800 - 3.5500 0.98 1462 141 0.1579 0.1967 REMARK 3 11 3.5500 - 3.4400 0.98 1467 155 0.1655 0.1995 REMARK 3 12 3.4400 - 3.3400 0.98 1482 134 0.1722 0.2217 REMARK 3 13 3.3400 - 3.2500 0.98 1490 136 0.1821 0.2168 REMARK 3 14 3.2500 - 3.1700 0.99 1435 146 0.1999 0.2482 REMARK 3 15 3.1700 - 3.1000 0.98 1489 127 0.2026 0.2445 REMARK 3 16 3.1000 - 3.0400 0.97 1447 139 0.2260 0.2310 REMARK 3 17 3.0400 - 2.9800 0.97 1434 139 0.2212 0.2344 REMARK 3 18 2.9800 - 2.9200 0.97 1460 144 0.2263 0.2734 REMARK 3 19 2.9200 - 2.8700 0.97 1444 137 0.2174 0.2850 REMARK 3 20 2.8700 - 2.8200 0.96 1446 137 0.2349 0.2747 REMARK 3 21 2.8200 - 2.7700 0.97 1438 136 0.2463 0.3158 REMARK 3 22 2.7700 - 2.7300 0.98 1482 147 0.2375 0.3252 REMARK 3 23 2.7300 - 2.6900 0.99 1479 132 0.2541 0.2984 REMARK 3 24 2.6900 - 2.6500 0.99 1454 142 0.2623 0.2958 REMARK 3 25 2.6500 - 2.6200 0.99 1499 134 0.2775 0.3331 REMARK 3 26 2.6200 - 2.5800 0.99 1505 132 0.2991 0.3465 REMARK 3 27 2.5800 - 2.5500 0.99 1471 145 0.3069 0.3613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.318 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3434 REMARK 3 ANGLE : 0.507 4679 REMARK 3 CHIRALITY : 0.042 529 REMARK 3 PLANARITY : 0.004 631 REMARK 3 DIHEDRAL : 23.313 1270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7425 17.3762 61.4288 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.3097 REMARK 3 T33: 0.2738 T12: -0.0023 REMARK 3 T13: -0.0057 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.4259 L22: 0.1510 REMARK 3 L33: 0.1092 L12: -0.0393 REMARK 3 L13: -0.0675 L23: -0.0832 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.0023 S13: -0.0835 REMARK 3 S21: -0.0481 S22: -0.0507 S23: 0.0606 REMARK 3 S31: -0.1939 S32: -0.1384 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3751 18.5828 79.7048 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2889 REMARK 3 T33: 0.2586 T12: -0.0223 REMARK 3 T13: 0.0057 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.2138 L22: 0.3004 REMARK 3 L33: 0.3901 L12: -0.2614 REMARK 3 L13: -0.1300 L23: 0.0707 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.0836 S13: -0.0197 REMARK 3 S21: 0.0291 S22: 0.0018 S23: -0.0283 REMARK 3 S31: 0.0817 S32: 0.1282 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6508 24.4034 66.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.3110 REMARK 3 T33: 0.3110 T12: -0.0169 REMARK 3 T13: 0.0133 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.5267 L22: 0.2985 REMARK 3 L33: 0.4143 L12: 0.2055 REMARK 3 L13: -0.0018 L23: 0.0383 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.0553 S13: 0.1022 REMARK 3 S21: -0.0463 S22: -0.0732 S23: -0.0509 REMARK 3 S31: -0.0350 S32: 0.0781 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2548 28.3711 48.1444 REMARK 3 T TENSOR REMARK 3 T11: 0.3169 T22: 0.3079 REMARK 3 T33: 0.3156 T12: 0.0000 REMARK 3 T13: 0.0365 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.0493 L22: 0.2175 REMARK 3 L33: 0.1642 L12: 0.1054 REMARK 3 L13: -0.0398 L23: -0.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.0517 S13: -0.0565 REMARK 3 S21: -0.0548 S22: -0.0032 S23: 0.0126 REMARK 3 S31: -0.2519 S32: -0.0692 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ITH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.93400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM CHLORIDE, 100 MM TRIS REMARK 280 -HCL, 28% (W/V) PEG400, PH 9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.94400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.64600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.94400 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.64600 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.94400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 85.64600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.94400 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 85.64600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.94400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 85.64600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.94400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 85.64600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.94400 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 85.64600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.94400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.94400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.64600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 119000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -228.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 171.29200 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 171.29200 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 171.29200 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 171.29200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 209 REMARK 465 PRO A 210 REMARK 465 ALA A 440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 439 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 11 O HOH A 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 196 OH TYR A 362 7556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 13 71.58 -100.22 REMARK 500 GLU A 44 53.00 -93.59 REMARK 500 ASN A 57 65.79 -119.83 REMARK 500 LEU A 213 137.03 -171.76 REMARK 500 SER A 260 112.82 -160.68 REMARK 500 LEU A 355 -148.76 63.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE2 REMARK 620 2 ASN A 87 OD1 85.7 REMARK 620 3 HOH A 701 O 77.9 163.6 REMARK 620 4 HOH A 775 O 83.0 87.5 89.6 REMARK 620 N 1 2 3 DBREF1 8ITH A 1 440 UNP A0A4V2TW40_9ACTN DBREF2 8ITH A A0A4V2TW40 1 440 SEQADV 8ITH ARG A 34 UNP A0A4V2TW4 HIS 34 CONFLICT SEQADV 8ITH VAL A 59 UNP A0A4V2TW4 ALA 59 CONFLICT SEQADV 8ITH MET A 101 UNP A0A4V2TW4 LEU 101 CONFLICT SEQADV 8ITH HIS A 287 UNP A0A4V2TW4 ASP 287 CONFLICT SEQADV 8ITH ASN A 295 UNP A0A4V2TW4 HIS 295 ENGINEERED MUTATION SEQADV 8ITH ALA A 380 UNP A0A4V2TW4 VAL 380 CONFLICT SEQADV 8ITH ILE A 425 UNP A0A4V2TW4 VAL 425 CONFLICT SEQRES 1 A 440 MET THR ARG LEU THR VAL ALA LEU SER GLY ASP CYS MET SEQRES 2 A 440 VAL THR ARG GLY GLY LEU ILE THR SER ASP PRO ALA ALA SEQRES 3 A 440 GLU ARG LEU ARG ASP LEU LEU ARG GLY THR ASP PHE ALA SEQRES 4 A 440 VAL THR ASN LEU GLU VAL VAL PRO SER ASP GLY ARG GLY SEQRES 5 A 440 HIS PRO VAL HIS ASN ALA VAL GLY GLY GLY CYS LEU ILE SEQRES 6 A 440 ALA ASP SER ALA VAL LEU ASP GLU VAL THR ALA ALA GLY SEQRES 7 A 440 PHE SER VAL LEU GLY CYS ALA ASN ASN HIS ALA MET ASP SEQRES 8 A 440 LEU GLY THR GLU GLY VAL LEU GLY THR MET ASP LEU LEU SEQRES 9 A 440 ARG ALA ARG GLY ILE PRO TYR ALA GLY ILE GLY ALA ASP SEQRES 10 A 440 LEU THR GLY ALA ARG ARG PRO VAL TYR ALA ASP ARG PRO SEQRES 11 A 440 GLY GLY SER LEU ALA LEU LEU SER CYS THR ALA THR PHE SEQRES 12 A 440 LEU PRO GLY GLN GLU ALA ALA ASP PRO SER PRO GLU LEU SEQRES 13 A 440 PRO GLY ARG PRO GLY LEU ASN PRO LEU ARG HIS THR ALA SEQRES 14 A 440 THR MET GLN VAL THR ALA ASP GLN MET ASP VAL LEU ARG SEQRES 15 A 440 THR ILE ASP ALA GLU THR GLY LEU ARG ALA ARG ARG ALA SEQRES 16 A 440 GLU ALA ARG ALA LEU LEU GLY VAL ASP PRO ALA LEU LEU SEQRES 17 A 440 GLY PRO ASP ARG LEU ALA LEU PHE GLY THR ARG PHE ARG SEQRES 18 A 440 THR ALA ASP ALA PRO GLY PHE THR THR GLU CYS ASP PRO SEQRES 19 A 440 ARG ASP LEU ASP GLU ILE ALA ARG TRP VAL GLY GLU ALA SEQRES 20 A 440 ARG LEU ARG ALA ASP LEU VAL VAL VAL SER VAL HIS SER SEQRES 21 A 440 HIS GLU PRO GLY PRO THR PRO GLU THR PRO GLY GLU PHE SEQRES 22 A 440 LEU ARG VAL PHE ALA HIS ARG MET ILE ASP GLU GLY ALA SEQRES 23 A 440 HIS ALA VAL VAL GLY HIS GLY PRO ASN PHE LEU ARG GLY SEQRES 24 A 440 VAL GLU LEU TYR ARG ASN LYS PRO ILE PHE TYR SER LEU SEQRES 25 A 440 GLY ASN ILE VAL SER GLN ILE GLU LEU THR ASP ARG VAL SEQRES 26 A 440 SER ALA GLU ASP TYR ALA LYS VAL THR ALA GLU ARG PRO SEQRES 27 A 440 LEU THR PRO GLY ARG TYR TYR ASP ARG LEU SER GLY HIS SEQRES 28 A 440 GLY THR ARG LEU PHE ALA PRO HIS ARG ARG TYR TRP GLN SEQRES 29 A 440 SER LEU VAL PRO VAL LEU THR PHE GLU ASP GLY THR LEU SEQRES 30 A 440 THR ALA ALA ARG LEU HIS PRO VAL ASP LEU GLY PHE GLY SEQRES 31 A 440 ARG PRO VAL HIS ARG ARG GLY ARG PRO ARG LEU ALA ASP SEQRES 32 A 440 ARG ALA GLU ALA GLU LYS THR LEU THR ASP VAL ALA GLN SEQRES 33 A 440 LEU SER GLN PRO TYR GLY THR ALA ILE GLU VAL MET ASP SEQRES 34 A 440 ASP GLY THR GLY GLU LEU ALA LEU ASP VAL ALA HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET CA A 604 1 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 CA CA 2+ FORMUL 6 HOH *114(H2 O) HELIX 1 AA1 ASP A 23 GLY A 35 1 13 HELIX 2 AA2 ALA A 69 GLY A 78 1 10 HELIX 3 AA3 LEU A 92 ARG A 107 1 16 HELIX 4 AA4 ASP A 117 ARG A 123 1 7 HELIX 5 AA5 THR A 174 THR A 188 1 15 HELIX 6 AA6 LEU A 190 ARG A 193 5 4 HELIX 7 AA7 ARG A 194 GLY A 202 1 9 HELIX 8 AA8 ASP A 233 ALA A 251 1 19 HELIX 9 AA9 GLY A 271 GLY A 285 1 15 HELIX 10 AB1 ILE A 319 THR A 322 5 4 HELIX 11 AB2 SER A 326 ALA A 331 1 6 HELIX 12 AB3 THR A 340 SER A 349 1 10 HELIX 13 AB4 HIS A 359 TYR A 362 5 4 HELIX 14 AB5 ASP A 403 GLN A 419 1 17 HELIX 15 AB6 PRO A 420 GLY A 422 5 3 SHEET 1 AA1 7 TYR A 111 ALA A 112 0 SHEET 2 AA1 7 VAL A 81 GLY A 83 1 N LEU A 82 O ALA A 112 SHEET 3 AA1 7 PHE A 38 LEU A 43 1 N THR A 41 O GLY A 83 SHEET 4 AA1 7 ARG A 3 MET A 13 1 N CYS A 12 O ASN A 42 SHEET 5 AA1 7 GLN A 364 GLU A 373 -1 O LEU A 370 N VAL A 6 SHEET 6 AA1 7 THR A 376 ASP A 386 -1 O VAL A 385 N SER A 365 SHEET 7 AA1 7 ARG A 400 LEU A 401 -1 O ARG A 400 N ASP A 386 SHEET 1 AA2 6 ASN A 314 SER A 317 0 SHEET 2 AA2 6 ARG A 3 MET A 13 1 N MET A 13 O VAL A 316 SHEET 3 AA2 6 GLN A 364 GLU A 373 -1 O LEU A 370 N VAL A 6 SHEET 4 AA2 6 THR A 376 ASP A 386 -1 O VAL A 385 N SER A 365 SHEET 5 AA2 6 GLY A 433 LEU A 435 -1 O GLY A 433 N LEU A 382 SHEET 6 AA2 6 ILE A 425 VAL A 427 -1 N GLU A 426 O GLU A 434 SHEET 1 AA3 2 VAL A 46 SER A 48 0 SHEET 2 AA3 2 ILE A 65 ASP A 67 1 O ALA A 66 N VAL A 46 SHEET 1 AA4 2 ILE A 114 GLY A 115 0 SHEET 2 AA4 2 GLY A 161 LEU A 162 -1 O GLY A 161 N GLY A 115 SHEET 1 AA5 6 VAL A 125 ARG A 129 0 SHEET 2 AA5 6 GLY A 132 THR A 140 -1 O LEU A 134 N ALA A 127 SHEET 3 AA5 6 LEU A 253 HIS A 259 1 O LEU A 253 N ALA A 135 SHEET 4 AA5 6 ALA A 288 HIS A 292 1 O VAL A 290 N VAL A 256 SHEET 5 AA5 6 LYS A 306 PHE A 309 1 O PHE A 309 N VAL A 289 SHEET 6 AA5 6 VAL A 300 TYR A 303 -1 N GLU A 301 O ILE A 308 SHEET 1 AA6 4 ARG A 212 LEU A 215 0 SHEET 2 AA6 4 THR A 218 THR A 222 -1 O PHE A 220 N LEU A 213 SHEET 3 AA6 4 HIS A 167 VAL A 173 1 N MET A 171 O ARG A 219 SHEET 4 AA6 4 GLY A 227 CYS A 232 -1 O THR A 229 N THR A 170 LINK OE2 GLU A 44 CA CA A 604 1555 1555 2.24 LINK OD1 ASN A 87 CA CA A 604 1555 1555 2.32 LINK CA CA A 604 O HOH A 701 1555 1555 2.48 LINK CA CA A 604 O HOH A 775 1555 1555 2.45 CRYST1 127.888 127.888 171.292 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005838 0.00000