HEADER HYDROLASE 24-MAR-23 8IUA TITLE CRYSTAL STRUCTURE OF GH66 ENDODEXTRANASE FROM FLAVOBACTERIUM TITLE 2 JOHNSONIAE IN COMPLEX WITH ISOMALTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CANDIDATE DEXTRANASE GLYCOSIDE HYDROLASE FAMILY 66; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM JOHNSONIAE UW101; SOURCE 3 ORGANISM_TAXID: 376686; SOURCE 4 ATCC: 17061; SOURCE 5 GENE: FJOH_4431; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSIDE HYDROLASE, GH66, DEXTRAN, TIM-BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,T.MIYAZAKI REVDAT 2 12-JUL-23 8IUA 1 JRNL REVDAT 1 14-JUN-23 8IUA 0 JRNL AUTH S.NAKAMURA,R.KURATA,T.TONOZUKA,K.FUNANE,E.Y.PARK,T.MIYAZAKI JRNL TITL BACTEROIDOTA POLYSACCHARIDE UTILIZATION SYSTEM FOR BRANCHED JRNL TITL 2 DEXTRAN EXOPOLYSACCHARIDES FROM LACTIC ACID BACTERIA. JRNL REF J.BIOL.CHEM. V. 299 04885 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37269952 JRNL DOI 10.1016/J.JBC.2023.104885 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.047 REMARK 3 FREE R VALUE TEST SET COUNT : 2536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33700 REMARK 3 B22 (A**2) : 0.75200 REMARK 3 B33 (A**2) : 0.19500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.69600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4545 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4120 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6180 ; 1.501 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9485 ; 0.510 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 7.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ; 4.314 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;14.477 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5322 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1086 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 892 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 69 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2257 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 305 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 0.707 ; 0.404 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2219 ; 0.707 ; 0.404 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ; 0.975 ; 0.720 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2773 ; 0.975 ; 0.720 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2326 ; 0.915 ; 0.518 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2327 ; 0.917 ; 0.520 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3408 ; 1.369 ; 0.908 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3409 ; 1.369 ; 0.910 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2100 -32.0220 -19.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.7169 T22: 0.0122 REMARK 3 T33: 0.0104 T12: 0.0251 REMARK 3 T13: 0.0097 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.5313 L22: 1.0818 REMARK 3 L33: 0.7393 L12: 0.5340 REMARK 3 L13: 0.6545 L23: 0.1446 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0529 S13: -0.0638 REMARK 3 S21: 0.0951 S22: -0.0263 S23: -0.0697 REMARK 3 S31: 0.0594 S32: 0.0022 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 586 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8760 -18.1750 -17.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.7165 T22: 0.0063 REMARK 3 T33: 0.0157 T12: 0.0082 REMARK 3 T13: -0.0075 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.0132 L22: 0.7236 REMARK 3 L33: 0.8165 L12: 0.0742 REMARK 3 L13: -0.3933 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0344 S13: 0.0613 REMARK 3 S21: 0.0978 S22: -0.0243 S23: 0.0666 REMARK 3 S31: -0.0228 S32: -0.0654 S33: 0.0431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8IUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, PH 8.5-9.0, 200MM REMARK 280 LITHIUM SULFATE, 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.85600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.99800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.85600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.99800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 963 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 221 H LEU A 295 1.33 REMARK 500 HD1 HIS A 505 HE1 TRP A 580 1.35 REMARK 500 OD1 ASP A 305 HG1 THR A 307 1.51 REMARK 500 HH TYR A 431 O HOH A 703 1.58 REMARK 500 HH TYR A 101 O HOH A 710 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 134 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASN A 480 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 -6.33 -145.14 REMARK 500 GLN A 174 73.14 -157.62 REMARK 500 TYR A 221 36.93 -156.52 REMARK 500 ASP A 310 76.28 30.12 REMARK 500 ASN A 326 79.88 -158.48 REMARK 500 GLU A 421 -14.26 -147.56 REMARK 500 ARG A 462 46.35 -149.55 REMARK 500 GLN A 578 -75.48 -118.59 REMARK 500 TRP A 580 116.14 -160.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 123 OD2 REMARK 620 2 HOH A 835 O 102.5 REMARK 620 3 HOH A 846 O 122.8 122.9 REMARK 620 N 1 2 DBREF 8IUA A 34 586 UNP A5FBI2 A5FBI2_FLAJ1 34 586 SEQADV 8IUA MET A 11 UNP A5FBI2 INITIATING METHIONINE SEQADV 8IUA GLY A 12 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 13 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 14 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 15 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 16 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 17 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 18 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 19 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 20 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 21 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 22 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA GLY A 23 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA LEU A 24 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA VAL A 25 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA PRO A 26 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA ARG A 27 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA GLY A 28 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 29 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA HIS A 30 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA MET A 31 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA ALA A 32 UNP A5FBI2 EXPRESSION TAG SEQADV 8IUA SER A 33 UNP A5FBI2 EXPRESSION TAG SEQRES 1 A 576 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 576 LEU VAL PRO ARG GLY SER HIS MET ALA SER ALA GLU ASP SEQRES 3 A 576 ALA VAL THR ALA LYS ILE THR LEU LYS THR ASP LYS ALA SEQRES 4 A 576 SER TYR LYS PRO GLY GLU THR VAL ASN PHE THR ALA ASP SEQRES 5 A 576 LYS VAL PHE ASN SER SER LEU ILE ARG TYR THR HIS LEU SEQRES 6 A 576 GLY LYS VAL ILE LYS GLU GLU THR PHE SER GLY THR SER SEQRES 7 A 576 TRP SER TRP LEU PRO PRO SER ASP ASP PHE GLN GLY TYR SEQRES 8 A 576 MET VAL ALA ILE TYR GLN THR ASN THR ASP GLY THR GLN SEQRES 9 A 576 THR ILE LEU GLY THR VAL GLY ILE ASP VAL SER SER ASP SEQRES 10 A 576 TRP ALA LYS PHE PRO ARG TYR GLY PHE LEU SER GLU PHE SEQRES 11 A 576 GLY ASN ILE SER GLU SER ASP ARG ALA ALA VAL ILE ASP SEQRES 12 A 576 ASN LEU LYS ASP TYR HIS ILE ASN GLY ILE GLN PHE TYR SEQRES 13 A 576 ASP TRP GLN TYR ARG GLN HIS GLN PRO LEU ALA GLY THR SEQRES 14 A 576 VAL SER ASN PRO MET PRO VAL TRP ASN ASP ILE ILE ASN SEQRES 15 A 576 ARG GLU VAL TYR GLY SER THR VAL SER GLY TYR ILE ALA SEQRES 16 A 576 GLN ALA HIS SER LYS ASN MET LYS ALA MET PHE TYR ASN SEQRES 17 A 576 LEU ALA TYR GLY VAL LEU ASN ASP TYR ASP PRO ASN LEU SEQRES 18 A 576 ILE LYS GLN GLN GLN PHE VAL TYR LYS ASP ALA ASN HIS SEQRES 19 A 576 ASN ASP LYS ASP LYS HIS GLU LEU GLY TRP PRO PHE ILE SEQRES 20 A 576 SER ASN ILE TYR ILE THR ASP PRO ALA ASN THR ALA TRP SEQRES 21 A 576 GLN ASN TYR LEU ALA GLN LYS ASN ASP ASP VAL TYR LYS SEQRES 22 A 576 VAL TYR ASP PHE ASP GLY PHE HIS ILE ASP GLN LEU GLY SEQRES 23 A 576 ASP ARG GLY ASN VAL PHE ARG TYR ASP GLY THR ASN ALA SEQRES 24 A 576 ASP LEU LYS ASN ALA PHE PRO SER PHE ILE SER ALA MET SEQRES 25 A 576 LYS SER ALA ASN THR ASN LYS LYS LEU VAL MET ASN ALA SEQRES 26 A 576 VAL ASN GLN TYR GLY GLN LYS GLU ILE ALA GLY LYS GLU SEQRES 27 A 576 LEU ASP PHE LEU TYR THR GLU VAL TRP SER PRO ASN GLU SEQRES 28 A 576 GLY PHE LYS ASP LEU THR GLN VAL LEU THR ASP ASN ALA SEQRES 29 A 576 ALA TYR SER ASN ASN SER LYS ASN THR VAL LEU ALA ALA SEQRES 30 A 576 TYR MET ASN TYR ASN LYS ALA ASN ASN GLN GLY MET PHE SEQRES 31 A 576 ASN THR PRO GLY VAL LEU LEU THR ASP ALA VAL ILE PHE SEQRES 32 A 576 ALA PHE GLY GLY SER HIS LEU GLU LEU GLY GLU HIS MET SEQRES 33 A 576 LEU GLY LYS GLU TYR PHE PRO ASN LYS ASN LEU SER MET SEQRES 34 A 576 SER ALA GLU LEU LYS SER SER LEU LEU GLU TYR TYR ASP SEQRES 35 A 576 PHE MET THR ALA TYR GLN ASN LEU LEU ARG ASP GLY GLY SEQRES 36 A 576 THR TYR THR ASN PRO THR ILE ALA THR GLY ASP GLY LYS SEQRES 37 A 576 LEU ASN LEU GLY SER TRP PRO PRO THR MET GLY LYS VAL SEQRES 38 A 576 ALA ALA VAL GLY LYS GLN VAL GLY SER ARG GLU ILE ILE SEQRES 39 A 576 HIS LEU LEU ASN PHE THR ASN ALA ASN SER LEU ASN TRP SEQRES 40 A 576 ARG ASP THR ASP GLY THR GLN ASN VAL PRO ASP LEU ILE SEQRES 41 A 576 LYS GLN ALA MET LEU ASN LEU ASN HIS SER GLY LYS VAL SEQRES 42 A 576 THR LYS ILE TRP TYR ALA SER PRO ASP TYR ASN GLY GLY SEQRES 43 A 576 ALA ALA VAL GLU LEU SER PHE SER GLN ASN GLY GLU LYS SEQRES 44 A 576 VAL ASN PHE LYS VAL PRO VAL LEU GLN TYR TRP ALA MET SEQRES 45 A 576 ILE VAL VAL GLU HET GLC B 1 24 HET GLC B 2 22 HET BGC A 601 24 HET NA A 602 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 BGC C6 H12 O6 FORMUL 4 NA NA 1+ FORMUL 5 HOH *268(H2 O) HELIX 1 AA1 GLU A 35 ALA A 40 1 6 HELIX 2 AA2 SER A 144 TYR A 158 1 15 HELIX 3 AA3 GLY A 197 LYS A 210 1 14 HELIX 4 AA4 LYS A 233 PHE A 237 5 5 HELIX 5 AA5 ASN A 267 TYR A 285 1 19 HELIX 6 AA6 ASP A 310 ASN A 313 5 4 HELIX 7 AA7 ALA A 314 ASN A 326 1 13 HELIX 8 AA8 GLY A 340 ALA A 345 1 6 HELIX 9 AA9 GLY A 362 ASN A 378 1 17 HELIX 10 AB1 ASN A 392 ASN A 396 5 5 HELIX 11 AB2 ASN A 401 PHE A 415 1 15 HELIX 12 AB3 SER A 440 TYR A 457 1 18 HELIX 13 AB4 TYR A 457 ARG A 462 1 6 HELIX 14 AB5 TYR A 553 ALA A 557 5 5 SHEET 1 AA1 3 LEU A 44 THR A 46 0 SHEET 2 AA1 3 VAL A 57 ALA A 61 -1 O THR A 60 N LYS A 45 SHEET 3 AA1 3 SER A 88 TRP A 91 -1 O TRP A 91 N VAL A 57 SHEET 1 AA2 4 LYS A 77 THR A 83 0 SHEET 2 AA2 4 SER A 68 HIS A 74 -1 N ILE A 70 O GLU A 82 SHEET 3 AA2 4 GLN A 99 THR A 108 -1 O ALA A 104 N ARG A 71 SHEET 4 AA2 4 GLN A 114 VAL A 124 -1 O LEU A 117 N ILE A 105 SHEET 1 AA3 8 TYR A 134 LEU A 137 0 SHEET 2 AA3 8 GLY A 162 PHE A 165 1 O GLN A 164 N GLY A 135 SHEET 3 AA3 8 LYS A 213 LEU A 219 1 O MET A 215 N PHE A 165 SHEET 4 AA3 8 GLY A 289 ASP A 293 1 O HIS A 291 N PHE A 216 SHEET 5 AA3 8 LYS A 330 VAL A 336 1 O VAL A 332 N ILE A 292 SHEET 6 AA3 8 LEU A 352 GLU A 355 1 O TYR A 353 N ALA A 335 SHEET 7 AA3 8 THR A 383 ALA A 386 1 O VAL A 384 N LEU A 352 SHEET 8 AA3 8 SER A 418 HIS A 419 1 O SER A 418 N LEU A 385 SHEET 1 AA4 2 VAL A 186 ASN A 188 0 SHEET 2 AA4 2 GLU A 194 TYR A 196 -1 O VAL A 195 N TRP A 187 SHEET 1 AA5 3 GLY A 222 VAL A 223 0 SHEET 2 AA5 3 ILE A 260 ILE A 262 -1 O TYR A 261 N VAL A 223 SHEET 3 AA5 3 LYS A 249 HIS A 250 -1 N HIS A 250 O ILE A 260 SHEET 1 AA6 2 GLY A 398 MET A 399 0 SHEET 2 AA6 2 LEU A 437 SER A 438 1 O SER A 438 N GLY A 398 SHEET 1 AA7 3 THR A 466 THR A 468 0 SHEET 2 AA7 3 VAL A 491 VAL A 498 -1 O GLY A 495 N THR A 468 SHEET 3 AA7 3 LEU A 481 SER A 483 1 N GLY A 482 O VAL A 491 SHEET 1 AA8 6 THR A 466 THR A 468 0 SHEET 2 AA8 6 VAL A 491 VAL A 498 -1 O GLY A 495 N THR A 468 SHEET 3 AA8 6 ARG A 501 ASN A 508 -1 O ILE A 503 N LYS A 496 SHEET 4 AA8 6 TRP A 580 GLU A 586 -1 O ILE A 583 N ILE A 504 SHEET 5 AA8 6 LYS A 545 ALA A 549 -1 N LYS A 545 O GLU A 586 SHEET 6 AA8 6 VAL A 559 LEU A 561 -1 O VAL A 559 N TYR A 548 SHEET 1 AA9 4 ILE A 472 THR A 474 0 SHEET 2 AA9 4 ILE A 530 ASN A 538 -1 O ASN A 536 N ALA A 473 SHEET 3 AA9 4 LYS A 569 LEU A 577 -1 O PHE A 572 N LEU A 535 SHEET 4 AA9 4 SER A 564 ASN A 566 -1 N ASN A 566 O LYS A 569 LINK O6 GLC B 1 C1 GLC B 2 1555 1555 1.49 LINK OD2 ASP A 123 NA NA A 602 1555 1555 2.33 LINK NA NA A 602 O HOH A 835 1555 1555 3.08 LINK NA NA A 602 O HOH A 846 1555 1555 2.47 CISPEP 1 TRP A 254 PRO A 255 0 6.30 CISPEP 2 SER A 358 PRO A 359 0 10.88 CISPEP 3 TRP A 484 PRO A 485 0 8.52 CRYST1 153.712 47.996 76.477 90.00 104.64 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006506 0.000000 0.001699 0.00000 SCALE2 0.000000 0.020835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013515 0.00000