HEADER OXIDOREDUCTASE 31-MAR-23 8IX6 TITLE CRYSTAL STRUCTURE OF PYRUVIC OXIME DIOXYGENASE (POD) FROM TITLE 2 BRADYRHIZOBIUM SP. WSM3983 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP. WSM3983; SOURCE 3 ORGANISM_TAXID: 1038867; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CLASS II ALDOLASE-LIKE, DIOXYGENASE, NON-HEME IRON, HIS-TRIAD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TSUJINO,Y.YAMADA,T.FUJIWARA REVDAT 1 03-APR-24 8IX6 0 JRNL AUTH S.TSUJINO,Y.YAMADA,M.SENDA,T.SENDA,T.FUJIWARA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF PYRUVIC OXIME JRNL TITL 2 DIOXYGENASE, A KEY ENZYME OF HETEROTROPHIC NITRIFICATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.9500 - 3.9200 0.99 2836 169 0.1993 0.2262 REMARK 3 2 3.9200 - 3.1100 0.99 2710 147 0.2469 0.2931 REMARK 3 3 3.1100 - 2.7200 1.00 2687 133 0.3025 0.2974 REMARK 3 4 2.7200 - 2.4700 1.00 2694 126 0.2865 0.3623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1740 REMARK 3 ANGLE : 0.514 2380 REMARK 3 CHIRALITY : 0.039 265 REMARK 3 PLANARITY : 0.004 306 REMARK 3 DIHEDRAL : 3.566 240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 76.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.10 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.56M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 76.94800 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 76.94800 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 76.94800 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 76.94800 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 76.94800 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 76.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -267.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 TYR A 10 REMARK 465 PHE A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 HIS A 22 REMARK 465 LEU A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 465 ALA A 26 REMARK 465 LYS A 27 REMARK 465 GLU A 94 REMARK 465 GLY A 95 REMARK 465 HIS A 251 REMARK 465 SER A 252 REMARK 465 ALA A 253 REMARK 465 GLY A 254 REMARK 465 PRO A 255 REMARK 465 ALA A 256 REMARK 465 ALA A 257 REMARK 465 LYS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 MET A 96 CG SD CE REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 ILE A 160 CG1 CG2 CD1 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 185 OG SER A 199 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 -161.76 -104.74 REMARK 500 THR A 90 98.49 -62.31 REMARK 500 HIS A 121 56.78 -106.24 REMARK 500 ASP A 148 15.50 -141.55 REMARK 500 VAL A 158 76.63 -117.25 REMARK 500 HIS A 183 -80.63 -143.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 NE2 97.9 REMARK 620 3 HIS A 183 NE2 110.9 93.1 REMARK 620 4 HOH A 405 O 78.6 169.1 97.8 REMARK 620 5 HOH A 408 O 84.0 97.5 160.3 71.9 REMARK 620 N 1 2 3 4 DBREF 8IX6 A 1 264 PDB 8IX6 8IX6 1 264 SEQRES 1 A 264 MET LYS ALA GLU LEU ARG ALA LYS GLU TYR PHE ASP ASP SEQRES 2 A 264 ARG ALA THR ARG GLU MET ALA GLU HIS LEU LYS GLY ALA SEQRES 3 A 264 LYS ARG SER TYR LYS GLU THR LEU ALA TYR ALA CYS ARG SEQRES 4 A 264 ILE LEU ALA MET THR GLY GLN GLU ALA GLY LEU ALA GLY SEQRES 5 A 264 GLN ILE SER PHE ARG SER GLU ARG PRO ASN ALA TYR TRP SEQRES 6 A 264 THR LEU ARG PHE GLY LEU GLY PHE ASP GLU ALA THR PRO SEQRES 7 A 264 ASP ASP PHE ILE GLU VAL ASP ARG ASP LEU ASN THR LEU SEQRES 8 A 264 THR GLY GLU GLY MET ALA ASN PRO ALA THR ARG PHE HIS SEQRES 9 A 264 LEU TRP VAL TYR ASP ALA ARG PRO ASP VAL LYS SER LEU SEQRES 10 A 264 ILE HIS THR HIS SER PRO TRP ALA SER ALA LEU ALA ALA SEQRES 11 A 264 ALA ARG GLN PRO LEU VAL ILE ALA GLN MET ASP MET THR SEQRES 12 A 264 PRO LEU HIS ASP ASP CYS ALA PHE LEU GLY GLU TRP PRO SEQRES 13 A 264 GLY VAL PRO ILE ALA ASP GLN GLU GLY VAL LEU ILE SER SEQRES 14 A 264 GLU ALA LEU GLY ARG LYS ARG ALA ILE ILE LEU ALA HIS SEQRES 15 A 264 HIS GLY TYR LEU THR ALA GLY VAL SER ILE GLU GLU ALA SEQRES 16 A 264 THR TYR LEU SER VAL TYR LEU GLU ARG ALA ALA ARG MET SEQRES 17 A 264 GLN ILE ARG ALA GLN ALA PHE GLY PRO LEU THR PRO VAL SEQRES 18 A 264 ASP ASP ALA LEU ALA LYS GLU ALA HIS ASP TYR LEU LEU SEQRES 19 A 264 LYS PRO SER ILE VAL GLY ALA THR PHE ASP TYR TRP CYS SEQRES 20 A 264 ARG GLN THR HIS SER ALA GLY PRO ALA ALA LYS HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS HET NI A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 2 NI NI 2+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *21(H2 O) HELIX 1 AA1 SER A 29 THR A 44 1 16 HELIX 2 AA2 GLY A 72 ALA A 76 5 5 HELIX 3 AA3 THR A 77 ASP A 79 5 3 HELIX 4 AA4 ASN A 98 ARG A 102 5 5 HELIX 5 AA5 PHE A 103 ARG A 111 1 9 HELIX 6 AA6 SER A 122 ALA A 131 1 10 HELIX 7 AA7 GLN A 139 HIS A 146 5 8 HELIX 8 AA8 ILE A 160 GLY A 173 1 14 HELIX 9 AA9 SER A 191 GLN A 213 1 23 HELIX 10 AB1 ALA A 214 GLY A 216 5 3 HELIX 11 AB2 ASP A 222 LEU A 234 1 13 HELIX 12 AB3 LYS A 235 ARG A 248 1 14 SHEET 1 AA1 8 THR A 90 THR A 92 0 SHEET 2 AA1 8 PHE A 81 ASP A 85 -1 N GLU A 83 O LEU A 91 SHEET 3 AA1 8 ALA A 63 LEU A 67 -1 N THR A 66 O ILE A 82 SHEET 4 AA1 8 GLN A 53 ARG A 57 -1 N PHE A 56 O TRP A 65 SHEET 5 AA1 8 SER A 116 THR A 120 -1 O HIS A 119 N GLN A 53 SHEET 6 AA1 8 GLY A 184 GLY A 189 -1 O THR A 187 N ILE A 118 SHEET 7 AA1 8 ALA A 177 LEU A 180 -1 N LEU A 180 O GLY A 184 SHEET 8 AA1 8 CYS A 149 LEU A 152 1 N ALA A 150 O ALA A 177 LINK NE2 HIS A 119 NI NI A 301 1555 1555 2.09 LINK NE2 HIS A 121 NI NI A 301 1555 1555 2.09 LINK NE2 HIS A 183 NI NI A 301 1555 1555 2.10 LINK NI NI A 301 O HOH A 405 1555 1555 2.32 LINK NI NI A 301 O HOH A 408 1555 1555 2.57 CRYST1 153.896 153.896 153.896 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006498 0.00000