HEADER TRANSFERASE 04-APR-23 8IYE TITLE STRUCTURE OF VLDE-D158N IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: VALIDAMINE 7-PHOSPHATE VALIENYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PSEUDOGLYCOSYLTRANSFERASE,TREHALOSE 6-PHOSPHATE SYNTHASE- COMPND 5 LIKE ENZYME VLDE; COMPND 6 EC: 2.5.1.135; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HYGROSCOPICUS SUBSP. LIMONEUS; SOURCE 3 ORGANISM_TAXID: 264445; SOURCE 4 GENE: VLDE, SHL15_8006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PSEUDOGLYCOSYLTRANSFERASE, VALIDAMINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.WONG,T.MORI,T.MAHMUD,I.ABE REVDAT 1 10-APR-24 8IYE 0 JRNL AUTH C.P.WONG,T.MORI,T.MAHMUD,I.ABE JRNL TITL STRUCTURE OF VLDE-D158N IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 74599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0400 - 5.6300 0.99 2848 149 0.1734 0.2389 REMARK 3 2 5.6300 - 4.4700 0.99 2797 132 0.1788 0.2103 REMARK 3 3 4.4700 - 3.9000 0.99 2786 131 0.1832 0.1901 REMARK 3 4 3.9000 - 3.5500 0.99 2785 138 0.2030 0.2271 REMARK 3 5 3.5500 - 3.2900 0.98 2762 139 0.2214 0.2854 REMARK 3 6 3.2900 - 3.1000 0.98 2678 169 0.2521 0.2955 REMARK 3 7 3.1000 - 2.9400 0.97 2736 129 0.2736 0.2777 REMARK 3 8 2.9400 - 2.8100 0.97 2708 133 0.2776 0.3500 REMARK 3 9 2.8100 - 2.7100 0.97 2740 135 0.2779 0.3168 REMARK 3 10 2.7100 - 2.6100 0.97 2722 129 0.2777 0.3819 REMARK 3 11 2.6100 - 2.5300 0.98 2677 147 0.2776 0.3632 REMARK 3 12 2.5300 - 2.4600 0.96 2700 153 0.2747 0.3327 REMARK 3 13 2.4600 - 2.3900 0.97 2683 144 0.2790 0.3006 REMARK 3 14 2.3900 - 2.3400 0.97 2775 108 0.2742 0.3165 REMARK 3 15 2.3400 - 2.2800 0.98 2649 122 0.2842 0.3626 REMARK 3 16 2.2800 - 2.2300 0.97 2754 159 0.2821 0.3128 REMARK 3 17 2.2300 - 2.1900 0.99 2710 137 0.2732 0.3824 REMARK 3 18 2.1900 - 2.1500 0.96 2687 146 0.2745 0.3339 REMARK 3 19 2.1500 - 2.1100 0.99 2753 152 0.2754 0.3421 REMARK 3 20 2.1100 - 2.0700 0.98 2655 160 0.2759 0.3382 REMARK 3 21 2.0700 - 2.0400 0.97 2688 155 0.2652 0.3153 REMARK 3 22 2.0400 - 2.0100 0.99 2731 152 0.2766 0.3035 REMARK 3 23 2.0100 - 1.9800 0.96 2686 130 0.2747 0.3010 REMARK 3 24 1.9800 - 1.9500 0.98 2785 119 0.2766 0.3278 REMARK 3 25 1.9500 - 1.9300 1.00 2680 167 0.2808 0.3345 REMARK 3 26 1.9300 - 1.9000 0.96 2742 147 0.2940 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7584 REMARK 3 ANGLE : 0.685 10356 REMARK 3 CHIRALITY : 0.044 1136 REMARK 3 PLANARITY : 0.007 1370 REMARK 3 DIHEDRAL : 16.049 2722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6021 32.0915 -51.9132 REMARK 3 T TENSOR REMARK 3 T11: 0.5243 T22: 0.3517 REMARK 3 T33: 0.3291 T12: 0.0238 REMARK 3 T13: -0.0879 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.2798 L22: 3.3612 REMARK 3 L33: 0.4676 L12: -2.6124 REMARK 3 L13: 0.0196 L23: -0.3560 REMARK 3 S TENSOR REMARK 3 S11: -0.2230 S12: -0.0618 S13: 0.3214 REMARK 3 S21: -0.2990 S22: 0.0158 S23: 0.1020 REMARK 3 S31: -0.4436 S32: -0.1689 S33: 0.2013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4782 9.3014 -44.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.3313 REMARK 3 T33: 0.1794 T12: 0.0299 REMARK 3 T13: -0.0168 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 0.7209 L22: 2.6692 REMARK 3 L33: 1.9197 L12: 0.9032 REMARK 3 L13: -0.2071 L23: -0.4759 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0888 S13: 0.0380 REMARK 3 S21: -0.2423 S22: -0.0526 S23: 0.0575 REMARK 3 S31: -0.0496 S32: 0.0852 S33: 0.0709 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9789 21.7009 -22.6682 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.4854 REMARK 3 T33: 0.2450 T12: 0.0138 REMARK 3 T13: -0.0095 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 1.0653 L22: 1.0293 REMARK 3 L33: 1.5173 L12: 0.2023 REMARK 3 L13: -0.3190 L23: 0.2015 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.1408 S13: 0.0309 REMARK 3 S21: 0.0618 S22: -0.1443 S23: 0.1969 REMARK 3 S31: -0.2580 S32: -0.2538 S33: 0.0596 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5355 -35.3945 -10.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.4851 T22: 0.5410 REMARK 3 T33: 0.3728 T12: -0.0946 REMARK 3 T13: 0.1397 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 3.7211 L22: 6.0307 REMARK 3 L33: 0.1019 L12: 4.7581 REMARK 3 L13: -0.2801 L23: -0.3634 REMARK 3 S TENSOR REMARK 3 S11: -0.4724 S12: 0.3152 S13: -0.4009 REMARK 3 S21: -0.2241 S22: 0.1850 S23: 0.0232 REMARK 3 S31: 0.3072 S32: -0.3774 S33: 0.2712 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6547 -18.6668 -9.8061 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.4725 REMARK 3 T33: 0.2417 T12: -0.0291 REMARK 3 T13: 0.0579 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.6561 L22: 2.2616 REMARK 3 L33: 1.9373 L12: -0.5092 REMARK 3 L13: 0.3367 L23: -1.0820 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.0474 S13: -0.1495 REMARK 3 S21: 0.2443 S22: -0.0415 S23: 0.2775 REMARK 3 S31: 0.2574 S32: -0.0199 S33: 0.0199 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2085 -18.2599 -32.9537 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.4754 REMARK 3 T33: 0.2087 T12: 0.0027 REMARK 3 T13: 0.0230 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 0.5339 L22: 1.1265 REMARK 3 L33: 1.2332 L12: 0.0395 REMARK 3 L13: 0.2448 L23: 0.4559 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.0794 S13: -0.0265 REMARK 3 S21: -0.0244 S22: -0.1325 S23: 0.1223 REMARK 3 S31: 0.1725 S32: -0.1420 S33: 0.0625 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH8.5, 26% PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.28350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 265 REMARK 465 GLY A 266 REMARK 465 ARG A 267 REMARK 465 ASN A 268 REMARK 465 ALA A 482 REMARK 465 GLU A 483 REMARK 465 ARG A 484 REMARK 465 PHE A 485 REMARK 465 ASP A 486 REMARK 465 THR A 487 REMARK 465 ALA A 488 REMARK 465 PRO A 489 REMARK 465 ALA A 490 REMARK 465 VAL A 491 REMARK 465 SER A 492 REMARK 465 THR A 493 REMARK 465 ARG A 494 REMARK 465 ALA A 495 REMARK 465 ASP A 496 REMARK 465 LEU A 497 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 265 REMARK 465 GLY B 266 REMARK 465 ARG B 267 REMARK 465 ASN B 268 REMARK 465 ALA B 482 REMARK 465 GLU B 483 REMARK 465 ARG B 484 REMARK 465 PHE B 485 REMARK 465 ASP B 486 REMARK 465 THR B 487 REMARK 465 ALA B 488 REMARK 465 PRO B 489 REMARK 465 ALA B 490 REMARK 465 VAL B 491 REMARK 465 SER B 492 REMARK 465 THR B 493 REMARK 465 ARG B 494 REMARK 465 ALA B 495 REMARK 465 ASP B 496 REMARK 465 LEU B 497 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 THR A 263 OG1 CG2 REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 GLN B 148 CG CD OE1 NE2 REMARK 470 ASP B 233 CG OD1 OD2 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 262 CG CD1 CD2 REMARK 470 LEU B 264 CG CD1 CD2 REMARK 470 LEU B 327 CG CD1 CD2 REMARK 470 SER B 352 OG REMARK 470 ARG B 442 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 104.22 -59.67 REMARK 500 ASP A 18 -151.76 -166.12 REMARK 500 LEU A 103 -79.28 -155.05 REMARK 500 ARG A 114 -38.72 69.07 REMARK 500 ASN A 158 147.09 75.71 REMARK 500 ASN A 379 44.86 -106.32 REMARK 500 GLN A 385 -53.67 -146.08 REMARK 500 ASN A 386 94.66 73.94 REMARK 500 ALA B 14 104.46 -59.96 REMARK 500 ASP B 18 -150.95 -165.07 REMARK 500 SER B 76 19.71 57.72 REMARK 500 LEU B 103 -78.88 -154.73 REMARK 500 ARG B 114 -38.96 68.95 REMARK 500 ASN B 158 145.93 81.71 REMARK 500 ASN B 379 45.71 -106.14 REMARK 500 GLN B 385 -53.68 -145.83 REMARK 500 ASN B 386 94.84 74.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 8IYE A 1 497 UNP Q15JG1 VLDE_STRHL 1 497 DBREF 8IYE B 1 497 UNP Q15JG1 VLDE_STRHL 1 497 SEQADV 8IYE ASN A 158 UNP Q15JG1 ASP 158 ENGINEERED MUTATION SEQADV 8IYE ASN B 158 UNP Q15JG1 ASP 158 ENGINEERED MUTATION SEQRES 1 A 497 MET THR GLY SER GLU ILE PHE LEU ALA SER LYS ARG ALA SEQRES 2 A 497 ALA ILE THR TYR ASP THR ASP PRO ALA THR GLY GLU PRO SEQRES 3 A 497 ARG ALA TRP LEU ALA PRO GLY GLY THR GLY ASN VAL VAL SEQRES 4 A 497 ALA GLU GLN ALA GLY VAL LEU ASN ILE SER TRP ILE ALA SEQRES 5 A 497 SER ALA ASP SER GLU ASP ASP ARG ARG ALA SER ALA LEU SEQRES 6 A 497 ASN PRO ASP GLY VAL THR MET GLU LEU HIS SER GLY ARG SEQRES 7 A 497 GLU ILE LEU VAL ARG LEU ILE ARG HIS ASP PRO ALA VAL SEQRES 8 A 497 PHE ARG ASN VAL GLN ASN PHE MET THR ALA ASN LEU MET SEQRES 9 A 497 TRP ALA ALA ASN ASN TYR GLY TRP ASP ARG TRP THR GLN SEQRES 10 A 497 PRO SER PHE GLY SER ASP ALA ARG GLU GLY TRP ALA ASP SEQRES 11 A 497 PHE GLY ARG PHE THR ARG ASP PHE ALA ASP ALA ILE LEU SEQRES 12 A 497 LYS SER SER ALA GLN SER ALA ASP PRO VAL TYR LEU VAL SEQRES 13 A 497 HIS ASN TYR GLN LEU VAL GLY VAL PRO ALA LEU LEU ARG SEQRES 14 A 497 GLU GLN ARG PRO ASP ALA PRO ILE LEU LEU PHE VAL HIS SEQRES 15 A 497 ILE PRO TRP PRO SER ALA ASP TYR TRP ARG ILE LEU PRO SEQRES 16 A 497 LYS GLU ILE ARG THR GLY ILE LEU HIS GLY MET LEU PRO SEQRES 17 A 497 ALA THR THR ILE GLY PHE PHE ALA ASP ARG TRP CYS ARG SEQRES 18 A 497 ASN PHE LEU GLU SER VAL ALA ASP LEU LEU PRO ASP ALA SEQRES 19 A 497 ARG ILE ASP ARG GLU ALA MET THR VAL GLU TRP ARG GLY SEQRES 20 A 497 HIS ARG THR ARG LEU ARG THR MET PRO LEU GLY TYR SER SEQRES 21 A 497 PRO LEU THR LEU ASP GLY ARG ASN PRO GLN LEU PRO GLU SEQRES 22 A 497 GLY ILE GLU GLU TRP ALA ASP GLY HIS ARG LEU VAL VAL SEQRES 23 A 497 HIS SER GLY ARG THR ASP PRO ILE LYS ASN ALA GLU ARG SEQRES 24 A 497 ALA VAL ARG ALA PHE VAL LEU ALA ALA ARG GLY GLY GLY SEQRES 25 A 497 LEU GLU LYS THR ARG MET LEU VAL ARG MET ASN PRO ASN SEQRES 26 A 497 ARG LEU TYR VAL PRO ALA ASN ALA ASP TYR VAL HIS ARG SEQRES 27 A 497 VAL GLU THR ALA VAL ALA GLU ALA ASN ALA GLU LEU GLY SEQRES 28 A 497 SER ASP THR VAL ARG ILE ASP ASN ASP ASN ASP VAL ASN SEQRES 29 A 497 HIS THR ILE ALA CYS PHE ARG ARG ALA ASP LEU LEU ILE SEQRES 30 A 497 PHE ASN SER THR VAL ASP GLY GLN ASN LEU SER THR PHE SEQRES 31 A 497 GLU ALA PRO LEU VAL ASN GLU ARG ASP ALA ASP VAL ILE SEQRES 32 A 497 LEU SER GLU THR CYS GLY ALA ALA GLU VAL LEU GLY GLU SEQRES 33 A 497 TYR CYS ARG SER VAL ASN PRO PHE ASP LEU VAL GLU GLN SEQRES 34 A 497 ALA GLU ALA ILE SER ALA ALA LEU ALA ALA GLY PRO ARG SEQRES 35 A 497 GLN ARG ALA GLU ALA ALA ALA ARG ARG ARG ASP ALA ALA SEQRES 36 A 497 ARG PRO TRP THR LEU GLU ALA TRP VAL GLN ALA GLN LEU SEQRES 37 A 497 ASP GLY LEU ALA ALA ASP HIS ALA ALA ARG THR ALA THR SEQRES 38 A 497 ALA GLU ARG PHE ASP THR ALA PRO ALA VAL SER THR ARG SEQRES 39 A 497 ALA ASP LEU SEQRES 1 B 497 MET THR GLY SER GLU ILE PHE LEU ALA SER LYS ARG ALA SEQRES 2 B 497 ALA ILE THR TYR ASP THR ASP PRO ALA THR GLY GLU PRO SEQRES 3 B 497 ARG ALA TRP LEU ALA PRO GLY GLY THR GLY ASN VAL VAL SEQRES 4 B 497 ALA GLU GLN ALA GLY VAL LEU ASN ILE SER TRP ILE ALA SEQRES 5 B 497 SER ALA ASP SER GLU ASP ASP ARG ARG ALA SER ALA LEU SEQRES 6 B 497 ASN PRO ASP GLY VAL THR MET GLU LEU HIS SER GLY ARG SEQRES 7 B 497 GLU ILE LEU VAL ARG LEU ILE ARG HIS ASP PRO ALA VAL SEQRES 8 B 497 PHE ARG ASN VAL GLN ASN PHE MET THR ALA ASN LEU MET SEQRES 9 B 497 TRP ALA ALA ASN ASN TYR GLY TRP ASP ARG TRP THR GLN SEQRES 10 B 497 PRO SER PHE GLY SER ASP ALA ARG GLU GLY TRP ALA ASP SEQRES 11 B 497 PHE GLY ARG PHE THR ARG ASP PHE ALA ASP ALA ILE LEU SEQRES 12 B 497 LYS SER SER ALA GLN SER ALA ASP PRO VAL TYR LEU VAL SEQRES 13 B 497 HIS ASN TYR GLN LEU VAL GLY VAL PRO ALA LEU LEU ARG SEQRES 14 B 497 GLU GLN ARG PRO ASP ALA PRO ILE LEU LEU PHE VAL HIS SEQRES 15 B 497 ILE PRO TRP PRO SER ALA ASP TYR TRP ARG ILE LEU PRO SEQRES 16 B 497 LYS GLU ILE ARG THR GLY ILE LEU HIS GLY MET LEU PRO SEQRES 17 B 497 ALA THR THR ILE GLY PHE PHE ALA ASP ARG TRP CYS ARG SEQRES 18 B 497 ASN PHE LEU GLU SER VAL ALA ASP LEU LEU PRO ASP ALA SEQRES 19 B 497 ARG ILE ASP ARG GLU ALA MET THR VAL GLU TRP ARG GLY SEQRES 20 B 497 HIS ARG THR ARG LEU ARG THR MET PRO LEU GLY TYR SER SEQRES 21 B 497 PRO LEU THR LEU ASP GLY ARG ASN PRO GLN LEU PRO GLU SEQRES 22 B 497 GLY ILE GLU GLU TRP ALA ASP GLY HIS ARG LEU VAL VAL SEQRES 23 B 497 HIS SER GLY ARG THR ASP PRO ILE LYS ASN ALA GLU ARG SEQRES 24 B 497 ALA VAL ARG ALA PHE VAL LEU ALA ALA ARG GLY GLY GLY SEQRES 25 B 497 LEU GLU LYS THR ARG MET LEU VAL ARG MET ASN PRO ASN SEQRES 26 B 497 ARG LEU TYR VAL PRO ALA ASN ALA ASP TYR VAL HIS ARG SEQRES 27 B 497 VAL GLU THR ALA VAL ALA GLU ALA ASN ALA GLU LEU GLY SEQRES 28 B 497 SER ASP THR VAL ARG ILE ASP ASN ASP ASN ASP VAL ASN SEQRES 29 B 497 HIS THR ILE ALA CYS PHE ARG ARG ALA ASP LEU LEU ILE SEQRES 30 B 497 PHE ASN SER THR VAL ASP GLY GLN ASN LEU SER THR PHE SEQRES 31 B 497 GLU ALA PRO LEU VAL ASN GLU ARG ASP ALA ASP VAL ILE SEQRES 32 B 497 LEU SER GLU THR CYS GLY ALA ALA GLU VAL LEU GLY GLU SEQRES 33 B 497 TYR CYS ARG SER VAL ASN PRO PHE ASP LEU VAL GLU GLN SEQRES 34 B 497 ALA GLU ALA ILE SER ALA ALA LEU ALA ALA GLY PRO ARG SEQRES 35 B 497 GLN ARG ALA GLU ALA ALA ALA ARG ARG ARG ASP ALA ALA SEQRES 36 B 497 ARG PRO TRP THR LEU GLU ALA TRP VAL GLN ALA GLN LEU SEQRES 37 B 497 ASP GLY LEU ALA ALA ASP HIS ALA ALA ARG THR ALA THR SEQRES 38 B 497 ALA GLU ARG PHE ASP THR ALA PRO ALA VAL SER THR ARG SEQRES 39 B 497 ALA ASP LEU HET GDP A 501 28 HET GDP B 501 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *497(H2 O) HELIX 1 AA1 GLY A 34 ALA A 40 1 7 HELIX 2 AA2 SER A 56 ASN A 66 1 11 HELIX 3 AA3 HIS A 75 GLY A 77 5 3 HELIX 4 AA4 ASP A 88 THR A 100 1 13 HELIX 5 AA5 LEU A 103 ASN A 109 1 7 HELIX 6 AA6 GLY A 121 SER A 146 1 26 HELIX 7 AA7 TYR A 159 VAL A 162 5 4 HELIX 8 AA8 GLY A 163 ARG A 172 1 10 HELIX 9 AA9 SER A 187 ARG A 192 1 6 HELIX 10 AB1 PRO A 195 LEU A 207 1 13 HELIX 11 AB2 ALA A 216 LEU A 231 1 16 HELIX 12 AB3 SER A 260 LEU A 264 5 5 HELIX 13 AB4 GLY A 274 ASP A 280 1 7 HELIX 14 AB5 ASP A 292 LYS A 295 5 4 HELIX 15 AB6 ASN A 296 GLY A 310 1 15 HELIX 16 AB7 VAL A 329 GLY A 351 1 23 HELIX 17 AB8 ASP A 362 ALA A 373 1 12 HELIX 18 AB9 LEU A 387 ASN A 396 1 10 HELIX 19 AC1 ALA A 410 GLY A 415 1 6 HELIX 20 AC2 GLU A 416 CYS A 418 5 3 HELIX 21 AC3 ASP A 425 ALA A 439 1 15 HELIX 22 AC4 GLY A 440 ARG A 456 1 17 HELIX 23 AC5 THR A 459 THR A 481 1 23 HELIX 24 AC6 GLY B 34 ALA B 40 1 7 HELIX 25 AC7 SER B 56 ASN B 66 1 11 HELIX 26 AC8 HIS B 75 GLY B 77 5 3 HELIX 27 AC9 ASP B 88 THR B 100 1 13 HELIX 28 AD1 LEU B 103 ASN B 109 1 7 HELIX 29 AD2 GLY B 121 SER B 146 1 26 HELIX 30 AD3 TYR B 159 VAL B 162 5 4 HELIX 31 AD4 GLY B 163 ARG B 172 1 10 HELIX 32 AD5 SER B 187 ARG B 192 1 6 HELIX 33 AD6 PRO B 195 LEU B 207 1 13 HELIX 34 AD7 ALA B 216 LEU B 231 1 16 HELIX 35 AD8 SER B 260 LEU B 264 5 5 HELIX 36 AD9 GLY B 274 ASP B 280 1 7 HELIX 37 AE1 ASP B 292 LYS B 295 5 4 HELIX 38 AE2 ASN B 296 GLY B 310 1 15 HELIX 39 AE3 VAL B 329 GLY B 351 1 23 HELIX 40 AE4 ASP B 362 ALA B 373 1 12 HELIX 41 AE5 LEU B 387 ASN B 396 1 10 HELIX 42 AE6 ALA B 410 GLY B 415 1 6 HELIX 43 AE7 GLU B 416 CYS B 418 5 3 HELIX 44 AE8 ASP B 425 ALA B 439 1 15 HELIX 45 AE9 GLY B 440 ARG B 456 1 17 HELIX 46 AF1 THR B 459 THR B 481 1 23 SHEET 1 AA110 VAL A 70 GLU A 73 0 SHEET 2 AA110 GLU A 79 ILE A 85 -1 O VAL A 82 N VAL A 70 SHEET 3 AA110 VAL A 45 SER A 53 1 N ALA A 52 O ILE A 85 SHEET 4 AA110 SER A 4 ALA A 9 1 N LEU A 8 O ILE A 51 SHEET 5 AA110 PRO A 152 HIS A 157 1 O LEU A 155 N ALA A 9 SHEET 6 AA110 ILE A 177 PHE A 180 1 O LEU A 178 N VAL A 156 SHEET 7 AA110 THR A 211 PHE A 214 1 O GLY A 213 N LEU A 179 SHEET 8 AA110 HIS A 248 THR A 254 1 O ARG A 251 N ILE A 212 SHEET 9 AA110 THR A 242 TRP A 245 -1 N TRP A 245 O HIS A 248 SHEET 10 AA110 ARG A 235 ASP A 237 -1 N ARG A 235 O GLU A 244 SHEET 1 AA2 2 ILE A 15 THR A 19 0 SHEET 2 AA2 2 PRO A 26 LEU A 30 -1 O ARG A 27 N ASP A 18 SHEET 1 AA3 6 VAL A 355 ASN A 359 0 SHEET 2 AA3 6 THR A 316 ASN A 323 1 N MET A 322 O ASP A 358 SHEET 3 AA3 6 ARG A 283 ARG A 290 1 N VAL A 285 O LEU A 319 SHEET 4 AA3 6 LEU A 375 PHE A 378 1 O LEU A 375 N VAL A 286 SHEET 5 AA3 6 ASP A 401 SER A 405 1 O ILE A 403 N LEU A 376 SHEET 6 AA3 6 ARG A 419 VAL A 421 1 O ARG A 419 N VAL A 402 SHEET 1 AA410 VAL B 70 GLU B 73 0 SHEET 2 AA410 GLU B 79 ILE B 85 -1 O VAL B 82 N VAL B 70 SHEET 3 AA410 VAL B 45 SER B 53 1 N TRP B 50 O LEU B 81 SHEET 4 AA410 SER B 4 ALA B 9 1 N LEU B 8 O ILE B 51 SHEET 5 AA410 PRO B 152 HIS B 157 1 O LEU B 155 N ALA B 9 SHEET 6 AA410 ILE B 177 PHE B 180 1 O LEU B 178 N VAL B 156 SHEET 7 AA410 THR B 211 PHE B 214 1 O GLY B 213 N LEU B 179 SHEET 8 AA410 HIS B 248 THR B 254 1 O ARG B 251 N ILE B 212 SHEET 9 AA410 THR B 242 TRP B 245 -1 N TRP B 245 O HIS B 248 SHEET 10 AA410 ARG B 235 ASP B 237 -1 N ARG B 235 O GLU B 244 SHEET 1 AA5 2 ILE B 15 THR B 19 0 SHEET 2 AA5 2 PRO B 26 LEU B 30 -1 O ARG B 27 N ASP B 18 SHEET 1 AA6 6 VAL B 355 ASN B 359 0 SHEET 2 AA6 6 THR B 316 ASN B 323 1 N VAL B 320 O ARG B 356 SHEET 3 AA6 6 ARG B 283 ARG B 290 1 N VAL B 285 O LEU B 319 SHEET 4 AA6 6 LEU B 375 PHE B 378 1 O LEU B 375 N VAL B 286 SHEET 5 AA6 6 ASP B 401 SER B 405 1 O ILE B 403 N LEU B 376 SHEET 6 AA6 6 ARG B 419 VAL B 421 1 O ARG B 419 N VAL B 402 CISPEP 1 GLN A 117 PRO A 118 0 -1.17 CISPEP 2 GLN B 117 PRO B 118 0 -1.78 CRYST1 48.044 84.567 120.928 90.00 90.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008269 0.00000 MTRIX1 1 1.000000 0.000339 -0.000296 -0.01205 1 MTRIX2 1 0.000339 -1.000000 0.000537 -0.65523 1 MTRIX3 1 -0.000295 -0.000537 -1.000000 -60.45974 1