HEADER TRANSFERASE 05-APR-23 8IYM TITLE CRYSTAL STRUCTURE OF A PROTEIN ACETYLTRANSFERASE, HP0935 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLTRANSFERASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: GNAT-DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI 26695; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 GENE: HP_0935; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS GNAT DOMAIN, PROTEIN ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.DADIREDDY,P.MAHANTA,A.KUMAR,R.N.DESIRAZU,S.RAMAKUMAR REVDAT 2 08-MAY-24 8IYM 1 COMPND REMARK HELIX SHEET REVDAT 2 2 1 ATOM REVDAT 1 10-APR-24 8IYM 0 JRNL AUTH V.DADIREDDY,P.MAHANTA,A.KUMAR,R.N.DESIRAZU,S.RAMAKUMAR JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN ACETYLTRANSFERASE, HP0935 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3738 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3525 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5015 ; 1.898 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8146 ; 0.699 ; 1.565 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 6.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ;11.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;13.422 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4222 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 838 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 1.620 ; 1.252 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1851 ; 1.589 ; 1.249 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2296 ; 2.253 ; 2.221 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.900 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : 1/2H-3/2K, -1/2H-1/2K, -L REMARK 3 TWIN FRACTION : 0.100 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 161 REMARK 3 RESIDUE RANGE : A 201 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 20.716 -10.691 -87.170 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: 0.0615 REMARK 3 T33: 0.0080 T12: -0.0127 REMARK 3 T13: 0.0101 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.8638 L22: 1.8386 REMARK 3 L33: 2.4194 L12: -0.9487 REMARK 3 L13: 0.0496 L23: -0.1074 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.1662 S13: -0.0035 REMARK 3 S21: -0.1564 S22: 0.0074 S23: -0.0696 REMARK 3 S31: -0.1137 S32: -0.1808 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 161 REMARK 3 RESIDUE RANGE : B 201 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): -14.903 -8.448 -87.131 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0353 REMARK 3 T33: 0.0135 T12: 0.0201 REMARK 3 T13: 0.0074 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.0723 L22: 3.2514 REMARK 3 L33: 2.1084 L12: 0.4721 REMARK 3 L13: 0.3113 L23: 0.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.1533 S13: 0.0157 REMARK 3 S21: -0.1310 S22: 0.0048 S23: 0.0720 REMARK 3 S31: 0.2585 S32: 0.0998 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 160 REMARK 3 RESIDUE RANGE : C 201 C 204 REMARK 3 ORIGIN FOR THE GROUP (A): 0.786 -40.153 -87.376 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0451 REMARK 3 T33: 0.0287 T12: 0.0076 REMARK 3 T13: 0.0098 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.8739 L22: 0.6460 REMARK 3 L33: 2.3870 L12: 0.7916 REMARK 3 L13: -0.1828 L23: 0.1081 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.1739 S13: -0.0104 REMARK 3 S21: -0.1547 S22: -0.0080 S23: -0.0612 REMARK 3 S31: -0.1760 S32: 0.2208 S33: -0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8IYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM THIOCYANATE, 0.1M BIS REMARK 280 -TRIS PROPANE PH 6.5, 20% (W/V) POLYETHYLENE GLYCOL 3500, 20% (W/ REMARK 280 V) ETHYLENE GLYCOL (CRYO, SOAKED), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.92800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.92800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K C 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 LEU A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 143 REMARK 465 LEU A 144 REMARK 465 GLY A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 SER B -1 REMARK 465 ASP B 34 REMARK 465 LEU B 35 REMARK 465 LEU B 36 REMARK 465 PRO B 37 REMARK 465 GLU B 143 REMARK 465 LEU B 144 REMARK 465 GLY B 145 REMARK 465 GLU B 146 REMARK 465 GLU B 147 REMARK 465 THR B 148 REMARK 465 LEU B 149 REMARK 465 ARG C 32 REMARK 465 LEU C 33 REMARK 465 ASP C 34 REMARK 465 LEU C 35 REMARK 465 LEU C 36 REMARK 465 GLU C 143 REMARK 465 LEU C 144 REMARK 465 GLY C 145 REMARK 465 GLU C 146 REMARK 465 GLU C 147 REMARK 465 SER C 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 LYS A 102 CD CE NZ REMARK 470 GLU A 137 OE1 OE2 REMARK 470 VAL A 141 CG1 CG2 REMARK 470 VAL A 142 CG1 CG2 REMARK 470 THR A 148 OG1 CG2 REMARK 470 LEU A 149 CG CD1 CD2 REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 MET B 0 CG SD CE REMARK 470 LEU B 27 CG CD1 CD2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 45 CD CE NZ REMARK 470 GLN B 73 CG CD OE1 NE2 REMARK 470 GLN B 88 CD OE1 NE2 REMARK 470 LYS B 102 CD CE NZ REMARK 470 LYS B 122 CD CE NZ REMARK 470 LYS B 129 CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 GLU B 138 CD OE1 OE2 REMARK 470 SER B 161 OG REMARK 470 ASN C 60 CG OD1 ND2 REMARK 470 GLN C 73 CG CD OE1 NE2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 LYS C 122 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 15 CD GLU A 15 OE1 0.155 REMARK 500 GLU A 52 CD GLU A 52 OE2 -0.070 REMARK 500 GLU B 16 CD GLU B 16 OE2 -0.070 REMARK 500 GLU B 52 CD GLU B 52 OE2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 38 170.32 -58.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 57 0.11 SIDE CHAIN REMARK 500 ARG B 57 0.07 SIDE CHAIN REMARK 500 ARG C 57 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8IYM A 1 161 UNP O25589 O25589_HELPY 1 161 DBREF 8IYM B 1 161 UNP O25589 O25589_HELPY 1 161 DBREF 8IYM C 1 161 UNP O25589 O25589_HELPY 1 161 SEQADV 8IYM SER A -1 UNP O25589 EXPRESSION TAG SEQADV 8IYM MET A 0 UNP O25589 EXPRESSION TAG SEQADV 8IYM VAL A 1 UNP O25589 MET 1 ENGINEERED MUTATION SEQADV 8IYM SER B -1 UNP O25589 EXPRESSION TAG SEQADV 8IYM MET B 0 UNP O25589 EXPRESSION TAG SEQADV 8IYM VAL B 1 UNP O25589 MET 1 ENGINEERED MUTATION SEQADV 8IYM SER C -1 UNP O25589 EXPRESSION TAG SEQADV 8IYM MET C 0 UNP O25589 EXPRESSION TAG SEQADV 8IYM VAL C 1 UNP O25589 MET 1 ENGINEERED MUTATION SEQRES 1 A 163 SER MET VAL THR ILE LYS VAL PHE SER PRO LYS TYR PRO SEQRES 2 A 163 THR GLU LEU GLU GLU PHE TYR ALA GLU ARG ILE ALA ASP SEQRES 3 A 163 ASN PRO LEU GLY PHE ILE GLN ARG LEU ASP LEU LEU PRO SEQRES 4 A 163 SER ILE SER GLY PHE VAL GLN LYS LEU ARG GLU HIS GLY SEQRES 5 A 163 GLY GLU PHE PHE GLU MET ARG GLU GLY ASN LYS LEU ILE SEQRES 6 A 163 GLY ILE CYS GLY LEU ASN PRO ILE ASN GLN THR GLU ALA SEQRES 7 A 163 GLU LEU CYS LYS PHE HIS ILE ASN SER ALA TYR GLN SER SEQRES 8 A 163 GLN GLY LEU GLY GLN LYS LEU TYR GLU SER VAL GLU LYS SEQRES 9 A 163 TYR ALA PHE ILE LYS GLY TYR THR LYS ILE SER LEU HIS SEQRES 10 A 163 VAL SER LYS SER GLN ILE LYS ALA CYS ASN LEU TYR GLN SEQRES 11 A 163 LYS LEU GLY PHE VAL HIS ILE LYS GLU GLU ASP CYS VAL SEQRES 12 A 163 VAL GLU LEU GLY GLU GLU THR LEU ILE PHE PRO THR LEU SEQRES 13 A 163 PHE MET GLU LYS ILE LEU SER SEQRES 1 B 163 SER MET VAL THR ILE LYS VAL PHE SER PRO LYS TYR PRO SEQRES 2 B 163 THR GLU LEU GLU GLU PHE TYR ALA GLU ARG ILE ALA ASP SEQRES 3 B 163 ASN PRO LEU GLY PHE ILE GLN ARG LEU ASP LEU LEU PRO SEQRES 4 B 163 SER ILE SER GLY PHE VAL GLN LYS LEU ARG GLU HIS GLY SEQRES 5 B 163 GLY GLU PHE PHE GLU MET ARG GLU GLY ASN LYS LEU ILE SEQRES 6 B 163 GLY ILE CYS GLY LEU ASN PRO ILE ASN GLN THR GLU ALA SEQRES 7 B 163 GLU LEU CYS LYS PHE HIS ILE ASN SER ALA TYR GLN SER SEQRES 8 B 163 GLN GLY LEU GLY GLN LYS LEU TYR GLU SER VAL GLU LYS SEQRES 9 B 163 TYR ALA PHE ILE LYS GLY TYR THR LYS ILE SER LEU HIS SEQRES 10 B 163 VAL SER LYS SER GLN ILE LYS ALA CYS ASN LEU TYR GLN SEQRES 11 B 163 LYS LEU GLY PHE VAL HIS ILE LYS GLU GLU ASP CYS VAL SEQRES 12 B 163 VAL GLU LEU GLY GLU GLU THR LEU ILE PHE PRO THR LEU SEQRES 13 B 163 PHE MET GLU LYS ILE LEU SER SEQRES 1 C 163 SER MET VAL THR ILE LYS VAL PHE SER PRO LYS TYR PRO SEQRES 2 C 163 THR GLU LEU GLU GLU PHE TYR ALA GLU ARG ILE ALA ASP SEQRES 3 C 163 ASN PRO LEU GLY PHE ILE GLN ARG LEU ASP LEU LEU PRO SEQRES 4 C 163 SER ILE SER GLY PHE VAL GLN LYS LEU ARG GLU HIS GLY SEQRES 5 C 163 GLY GLU PHE PHE GLU MET ARG GLU GLY ASN LYS LEU ILE SEQRES 6 C 163 GLY ILE CYS GLY LEU ASN PRO ILE ASN GLN THR GLU ALA SEQRES 7 C 163 GLU LEU CYS LYS PHE HIS ILE ASN SER ALA TYR GLN SER SEQRES 8 C 163 GLN GLY LEU GLY GLN LYS LEU TYR GLU SER VAL GLU LYS SEQRES 9 C 163 TYR ALA PHE ILE LYS GLY TYR THR LYS ILE SER LEU HIS SEQRES 10 C 163 VAL SER LYS SER GLN ILE LYS ALA CYS ASN LEU TYR GLN SEQRES 11 C 163 LYS LEU GLY PHE VAL HIS ILE LYS GLU GLU ASP CYS VAL SEQRES 12 C 163 VAL GLU LEU GLY GLU GLU THR LEU ILE PHE PRO THR LEU SEQRES 13 C 163 PHE MET GLU LYS ILE LEU SER HET K A 201 1 HET K A 202 1 HET EDO A 203 4 HET SCN A 204 3 HET SCN A 205 3 HET EDO B 201 4 HET SCN B 202 3 HET SCN B 203 3 HET SCN B 204 3 HET SCN B 205 3 HET SCN B 206 3 HET K C 201 1 HET EDO C 202 4 HET SCN C 203 3 HET SCN C 204 3 HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SCN THIOCYANATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 K 3(K 1+) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 7 SCN 9(C N S 1-) FORMUL 19 HOH *282(H2 O) HELIX 1 AA1 THR A 12 ASP A 24 1 13 HELIX 2 AA2 SER A 38 HIS A 49 1 12 HELIX 3 AA3 SER A 85 GLN A 90 5 6 HELIX 4 AA4 GLY A 91 LYS A 107 1 17 HELIX 5 AA5 GLN A 120 LEU A 130 1 11 HELIX 6 AA6 THR B 12 ASP B 24 1 13 HELIX 7 AA7 ILE B 39 HIS B 49 1 11 HELIX 8 AA8 SER B 85 GLN B 88 5 4 HELIX 9 AA9 GLY B 91 LYS B 107 1 17 HELIX 10 AB1 GLN B 120 GLY B 131 1 12 HELIX 11 AB2 THR C 12 ALA C 23 1 12 HELIX 12 AB3 SER C 38 HIS C 49 1 12 HELIX 13 AB4 SER C 85 GLN C 88 5 4 HELIX 14 AB5 GLY C 91 LYS C 107 1 17 HELIX 15 AB6 GLN C 120 GLY C 131 1 12 SHEET 1 AA1 7 VAL A 1 VAL A 5 0 SHEET 2 AA1 7 GLU A 52 GLU A 58 -1 O ARG A 57 N THR A 2 SHEET 3 AA1 7 LYS A 61 PRO A 70 -1 O CYS A 66 N PHE A 54 SHEET 4 AA1 7 GLU A 75 ILE A 83 -1 O CYS A 79 N GLY A 67 SHEET 5 AA1 7 LYS A 111 SER A 117 1 O LYS A 111 N ALA A 76 SHEET 6 AA1 7 ILE A 150 ILE A 159 -1 O LEU A 154 N VAL A 116 SHEET 7 AA1 7 VAL A 133 VAL A 141 -1 N VAL A 133 O GLU A 157 SHEET 1 AA2 7 VAL B 1 VAL B 5 0 SHEET 2 AA2 7 GLU B 52 GLU B 58 -1 O GLU B 55 N LYS B 4 SHEET 3 AA2 7 LYS B 61 PRO B 70 -1 O CYS B 66 N PHE B 54 SHEET 4 AA2 7 GLU B 75 ILE B 83 -1 O CYS B 79 N GLY B 67 SHEET 5 AA2 7 LYS B 111 SER B 117 1 O SER B 113 N LEU B 78 SHEET 6 AA2 7 PHE B 151 ILE B 159 -1 O LEU B 154 N VAL B 116 SHEET 7 AA2 7 VAL B 133 CYS B 140 -1 N VAL B 133 O GLU B 157 SHEET 1 AA3 7 VAL C 1 VAL C 5 0 SHEET 2 AA3 7 GLU C 52 GLU C 58 -1 O ARG C 57 N THR C 2 SHEET 3 AA3 7 LYS C 61 PRO C 70 -1 O CYS C 66 N PHE C 54 SHEET 4 AA3 7 GLU C 75 ILE C 83 -1 O CYS C 79 N GLY C 67 SHEET 5 AA3 7 LYS C 111 SER C 117 1 O SER C 113 N LEU C 78 SHEET 6 AA3 7 ILE C 150 ILE C 159 -1 O LEU C 154 N VAL C 116 SHEET 7 AA3 7 VAL C 133 VAL C 141 -1 N VAL C 133 O GLU C 157 CRYST1 117.856 66.170 70.904 90.00 91.42 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008485 0.000000 0.000211 0.00000 SCALE2 0.000000 0.015113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014108 0.00000