HEADER BIOSYNTHETIC PROTEIN 06-APR-23 8IYU TITLE CFBA S11T VARIANT WITH NI(II) IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHYDROCHLORIN COBALTOCHELATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 GENE: CBIX, CFBA, MJ0970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CHELATASE, NICKEL, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.OGAWA,T.FUJISHIRO REVDAT 1 10-APR-24 8IYU 0 JRNL AUTH S.OGAWA,M.HIKITA,T.FUJISHIRO JRNL TITL SUBSTRATE SELECTIVITY OF CFBA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5000 - 4.2000 1.00 2628 138 0.1586 0.1653 REMARK 3 2 4.2000 - 3.3300 1.00 2620 138 0.1667 0.1712 REMARK 3 3 3.3300 - 2.9100 1.00 2582 136 0.2161 0.2535 REMARK 3 4 2.9100 - 2.6500 1.00 2596 136 0.2422 0.2750 REMARK 3 5 2.6500 - 2.4600 1.00 2587 137 0.2206 0.2511 REMARK 3 6 2.4600 - 2.3100 1.00 2576 135 0.2161 0.3041 REMARK 3 7 2.3100 - 2.2000 1.00 2580 136 0.2152 0.2756 REMARK 3 8 2.2000 - 2.1000 1.00 2578 136 0.2138 0.2326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1927 REMARK 3 ANGLE : 1.240 2605 REMARK 3 CHIRALITY : 0.073 311 REMARK 3 PLANARITY : 0.007 333 REMARK 3 DIHEDRAL : 38.911 259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5069 14.4384 11.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.5612 T22: 0.4346 REMARK 3 T33: 0.4525 T12: -0.0223 REMARK 3 T13: -0.0535 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.9385 L22: 4.7901 REMARK 3 L33: 5.9266 L12: -2.0453 REMARK 3 L13: -2.3723 L23: 3.2607 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: 0.1526 S13: -0.1782 REMARK 3 S21: -0.0589 S22: -0.3060 S23: 0.5330 REMARK 3 S31: -0.0455 S32: -0.2887 S33: 0.0634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0737 17.3334 13.7685 REMARK 3 T TENSOR REMARK 3 T11: 0.5256 T22: 0.4825 REMARK 3 T33: 0.4044 T12: -0.0275 REMARK 3 T13: -0.1294 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.9724 L22: 7.0766 REMARK 3 L33: 4.9413 L12: -0.1397 REMARK 3 L13: -3.0732 L23: 0.7629 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.2999 S13: -0.0637 REMARK 3 S21: 0.5515 S22: 0.0576 S23: -0.3442 REMARK 3 S31: 0.3296 S32: 0.4836 S33: -0.1075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5639 12.8076 17.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.8033 T22: 0.4722 REMARK 3 T33: 0.6044 T12: -0.0832 REMARK 3 T13: 0.0252 T23: 0.1205 REMARK 3 L TENSOR REMARK 3 L11: 6.7578 L22: 2.2715 REMARK 3 L33: 2.6858 L12: 0.6843 REMARK 3 L13: 0.4532 L23: 2.4555 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.4966 S13: -0.7363 REMARK 3 S21: 1.0179 S22: -0.1118 S23: 0.6864 REMARK 3 S31: 1.0161 S32: -0.9806 S33: 0.0875 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9302 20.4534 10.9423 REMARK 3 T TENSOR REMARK 3 T11: 0.5254 T22: 0.5760 REMARK 3 T33: 0.5141 T12: 0.0164 REMARK 3 T13: 0.0333 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.0983 L22: 3.3154 REMARK 3 L33: 9.0680 L12: 0.6756 REMARK 3 L13: 1.4970 L23: 1.8925 REMARK 3 S TENSOR REMARK 3 S11: 0.2052 S12: -0.1601 S13: 0.2706 REMARK 3 S21: 0.4118 S22: -0.2507 S23: 0.3996 REMARK 3 S31: -0.2180 S32: -1.3684 S33: 0.0649 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2660 21.2135 -1.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.3881 REMARK 3 T33: 0.5027 T12: -0.0999 REMARK 3 T13: -0.0146 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.3995 L22: 2.3908 REMARK 3 L33: 8.1312 L12: -1.2578 REMARK 3 L13: -2.6435 L23: 1.0668 REMARK 3 S TENSOR REMARK 3 S11: 0.2997 S12: 0.1626 S13: 0.6924 REMARK 3 S21: -0.1057 S22: 0.1921 S23: -0.4427 REMARK 3 S31: -0.8883 S32: 0.5725 S33: -0.4633 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3276 10.6866 -12.5803 REMARK 3 T TENSOR REMARK 3 T11: 0.4023 T22: 0.5033 REMARK 3 T33: 0.4575 T12: 0.0037 REMARK 3 T13: -0.0268 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.0521 L22: 3.8866 REMARK 3 L33: 6.2406 L12: -3.4614 REMARK 3 L13: -2.3355 L23: 2.9473 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: -1.1440 S13: -0.2598 REMARK 3 S21: 0.2261 S22: 0.1333 S23: 0.2773 REMARK 3 S31: 0.4257 S32: 0.5832 S33: 0.0541 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6200 18.4827 -14.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.4501 T22: 0.4715 REMARK 3 T33: 0.3772 T12: -0.0184 REMARK 3 T13: -0.0232 T23: 0.1033 REMARK 3 L TENSOR REMARK 3 L11: 6.9825 L22: 3.3033 REMARK 3 L33: 5.1237 L12: 0.0437 REMARK 3 L13: -1.9504 L23: 2.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.1897 S12: 0.4564 S13: 0.3270 REMARK 3 S21: -0.3499 S22: -0.0138 S23: 0.2414 REMARK 3 S31: -0.6768 S32: -0.2953 S33: -0.2247 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7644 6.0135 -18.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.6205 REMARK 3 T33: 0.5551 T12: -0.0550 REMARK 3 T13: -0.1194 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 8.3854 L22: 5.9996 REMARK 3 L33: 5.7371 L12: -0.7628 REMARK 3 L13: -1.6656 L23: 1.1482 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 1.2506 S13: -0.4428 REMARK 3 S21: -0.2205 S22: 0.1247 S23: 0.6940 REMARK 3 S31: 0.5253 S32: -1.1466 S33: -0.0140 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1522 6.0678 -9.2021 REMARK 3 T TENSOR REMARK 3 T11: 0.4213 T22: 0.4897 REMARK 3 T33: 0.5254 T12: 0.0436 REMARK 3 T13: -0.0391 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.2248 L22: 1.9697 REMARK 3 L33: 7.1322 L12: 0.6296 REMARK 3 L13: 0.0537 L23: 0.7686 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.1990 S13: -0.2643 REMARK 3 S21: 0.2179 S22: 0.1211 S23: -0.1954 REMARK 3 S31: 0.5684 S32: 0.5094 S33: -0.1093 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4552 -3.3144 -13.3728 REMARK 3 T TENSOR REMARK 3 T11: 0.8888 T22: 0.5291 REMARK 3 T33: 0.5404 T12: -0.0290 REMARK 3 T13: -0.0742 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 7.1961 L22: 7.0501 REMARK 3 L33: 9.3442 L12: 1.5283 REMARK 3 L13: -2.0155 L23: 0.1130 REMARK 3 S TENSOR REMARK 3 S11: -0.3240 S12: 0.3151 S13: -0.6359 REMARK 3 S21: -0.3709 S22: 0.4352 S23: -0.2812 REMARK 3 S31: 2.1421 S32: -0.1216 S33: -0.3301 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3912 18.3274 0.2173 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.4854 REMARK 3 T33: 0.4894 T12: -0.0878 REMARK 3 T13: -0.0009 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.3840 L22: 3.8488 REMARK 3 L33: 6.6222 L12: -0.8884 REMARK 3 L13: -1.8961 L23: 2.7905 REMARK 3 S TENSOR REMARK 3 S11: 0.3370 S12: -0.1106 S13: 0.4931 REMARK 3 S21: -0.2385 S22: 0.1976 S23: -0.6613 REMARK 3 S31: -0.6887 S32: 0.7373 S33: -0.4777 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300035275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.49 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M NA-MALONATE, 0.1M TRIS-HCL, 8% REMARK 280 (W/V) GAMMA-PGA, PH 7.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.05500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.02750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.08250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 90 REMARK 465 HIS A 91 REMARK 465 GLU A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 SER A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 GLU A 108 REMARK 465 HIS A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 ASN B 90 REMARK 465 HIS B 91 REMARK 465 GLU B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 GLU B 96 REMARK 465 HIS B 97 REMARK 465 SER B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 GLU B 108 REMARK 465 HIS B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 LEU B 112 REMARK 465 GLU B 113 REMARK 465 ILE B 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 116 CB GLU A 116 CG 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -21.74 73.80 REMARK 500 ARG A 78 -62.31 -122.18 REMARK 500 PHE B 43 -22.46 73.61 REMARK 500 ARG B 78 -60.40 -122.45 REMARK 500 GLU B 116 -149.70 -103.89 REMARK 500 ASP B 117 5.96 -69.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HIS A 75 NE2 87.2 REMARK 620 3 HOH A 323 O 87.4 86.5 REMARK 620 4 HOH A 324 O 157.2 98.7 114.8 REMARK 620 5 HOH A 325 O 93.3 176.5 97.0 79.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 HIS B 75 NE2 93.6 REMARK 620 3 HOH B 321 O 150.3 89.6 REMARK 620 4 HOH B 322 O 100.9 96.4 108.1 REMARK 620 N 1 2 3 DBREF 8IYU A 1 143 UNP Q58380 CFBA_METJA 1 143 DBREF 8IYU B 1 143 UNP Q58380 CFBA_METJA 1 143 SEQADV 8IYU THR A 11 UNP Q58380 SER 11 ENGINEERED MUTATION SEQADV 8IYU THR B 11 UNP Q58380 SER 11 ENGINEERED MUTATION SEQRES 1 A 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY THR ARG LEU SEQRES 2 A 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 A 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 A 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 A 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 A 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 A 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 A 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 A 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 A 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 A 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG SEQRES 1 B 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY THR ARG LEU SEQRES 2 B 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 B 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 B 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 B 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 B 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 B 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 B 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 B 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 B 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 B 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG HET NI A 201 1 HET NI B 201 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *53(H2 O) HELIX 1 AA1 PRO A 14 ARG A 30 1 17 HELIX 2 AA2 THR A 47 GLN A 58 1 12 HELIX 3 AA3 GLY A 73 ARG A 78 1 6 HELIX 4 AA4 ARG A 78 LEU A 84 1 7 HELIX 5 AA5 ASP A 129 PHE A 141 1 13 HELIX 6 AA6 PRO B 14 ARG B 30 1 17 HELIX 7 AA7 THR B 47 GLN B 58 1 12 HELIX 8 AA8 GLY B 73 ARG B 78 1 6 HELIX 9 AA9 ARG B 78 LEU B 84 1 7 HELIX 10 AB1 ASP B 129 PHE B 141 1 13 SHEET 1 AA1 4 ILE A 35 LEU A 40 0 SHEET 2 AA1 4 GLU A 2 GLY A 8 1 N LEU A 6 O GLU A 37 SHEET 3 AA1 4 ARG A 62 PRO A 67 1 O ILE A 64 N VAL A 5 SHEET 4 AA1 4 GLU A 119 TYR A 122 1 O ILE A 121 N ILE A 63 SHEET 1 AA2 4 ILE B 35 LEU B 40 0 SHEET 2 AA2 4 GLU B 2 GLY B 8 1 N LEU B 6 O GLU B 37 SHEET 3 AA2 4 ARG B 62 PRO B 67 1 O ILE B 64 N VAL B 5 SHEET 4 AA2 4 GLU B 119 TYR B 122 1 O GLU B 119 N ILE B 63 LINK NE2 HIS A 9 NI NI A 201 1555 1555 2.35 LINK NE2 HIS A 75 NI NI A 201 1555 1555 2.34 LINK NI NI A 201 O HOH A 323 1555 1555 2.67 LINK NI NI A 201 O HOH A 324 1555 1555 2.47 LINK NI NI A 201 O HOH A 325 1555 1555 2.68 LINK NE2 HIS B 9 NI NI B 201 1555 1555 2.22 LINK NE2 HIS B 75 NI NI B 201 1555 1555 2.23 LINK NI NI B 201 O HOH B 321 1555 1555 2.61 LINK NI NI B 201 O HOH B 322 1555 1555 2.48 CISPEP 1 GLU A 45 PRO A 46 0 1.64 CISPEP 2 GLU B 45 PRO B 46 0 0.74 CRYST1 67.180 67.180 84.110 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011889 0.00000