HEADER PHOTOSYNTHESIS 10-APR-23 8J0D TITLE FCP HETERODIMER, LHCA2, AND LHCF5 TOGETHER AS THE M1 SIDE BINDS TO THE TITLE 2 PSII CORE IN THE DIATOM THALASSIOSIRA PSEUDONANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOXANTHIN CHL A/C PROTEIN, LHCA CLADE; COMPND 3 CHAIN: 3; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FUCOXANTHIN-CHLOROPHYLL A-C BINDING PROTEIN, PLASTID; COMPND 6 CHAIN: 4; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: FUCOXANTHIN CHLOROPHYLL A/C PROTEIN 6; COMPND 9 CHAIN: 5; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: FUCOXANTHIN CHLOROPHYLL A/C PROTEIN 5; COMPND 12 CHAIN: 6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THALASSIOSIRA PSEUDONANA; SOURCE 3 ORGANISM_COMMON: MARINE DIATOM, CYCLOTELLA NANA; SOURCE 4 ORGANISM_TAXID: 35128; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THALASSIOSIRA PSEUDONANA; SOURCE 7 ORGANISM_COMMON: MARINE DIATOM, CYCLOTELLA NANA; SOURCE 8 ORGANISM_TAXID: 35128; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: THALASSIOSIRA PSEUDONANA; SOURCE 11 ORGANISM_COMMON: MARINE DIATOM, CYCLOTELLA NANA; SOURCE 12 ORGANISM_TAXID: 35128; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: THALASSIOSIRA PSEUDONANA; SOURCE 15 ORGANISM_COMMON: MARINE DIATOM, CYCLOTELLA NANA; SOURCE 16 ORGANISM_TAXID: 35128 KEYWDS FCP, HETERODIMER, PHOTOSYNTHESIS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.LI,Y.FENG,W.WANG,J.R.SHEN REVDAT 2 08-NOV-23 8J0D 1 JRNL REVDAT 1 25-OCT-23 8J0D 0 JRNL AUTH Y.FENG,Z.LI,X.LI,L.SHEN,X.LIU,C.ZHOU,J.ZHANG,M.SANG,G.HAN, JRNL AUTH 2 W.YANG,T.KUANG,W.WANG,J.R.SHEN JRNL TITL STRUCTURE OF A DIATOM PHOTOSYSTEM II SUPERCOMPLEX CONTAINING JRNL TITL 2 A MEMBER OF LHCX FAMILY AND DIMERIC FCPII. JRNL REF SCI ADV V. 9 I8446 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37878698 JRNL DOI 10.1126/SCIADV.ADI8446 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.190 REMARK 3 NUMBER OF PARTICLES : 97098 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8J0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036934. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : M1 LOCAL REFINEMENT IN THE PSII REMARK 245 -FCPII FROM THE THALASSIOSIRA REMARK 245 PSEUDONANA AT 3.19 ANGSTROM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 3, 4, 5, 6 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU 4 35 CG CD OE1 OE2 REMARK 470 PRO 5 41 CG CD REMARK 470 GLU 5 141 CG CD OE1 OE2 REMARK 470 ARG 5 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO 5 41 N - CA - CB ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA 3 37 130.17 68.72 REMARK 500 ASP 3 48 -142.13 41.89 REMARK 500 SER 3 50 -114.58 46.99 REMARK 500 LEU 3 51 130.24 -39.88 REMARK 500 ASP 3 58 76.38 -161.09 REMARK 500 PHE 3 62 -9.08 71.59 REMARK 500 ASN 3 79 12.68 -142.66 REMARK 500 PRO 3 115 4.76 -64.49 REMARK 500 ASN 3 117 -3.60 73.94 REMARK 500 ASN 3 119 21.81 49.78 REMARK 500 LYS 3 166 47.34 -85.61 REMARK 500 SER 3 170 136.89 71.74 REMARK 500 ASP 3 172 -143.41 51.66 REMARK 500 ILE 3 173 -8.53 71.51 REMARK 500 ALA 3 176 87.48 -68.28 REMARK 500 ASN 3 182 74.35 -159.46 REMARK 500 ALA 3 232 51.71 -91.70 REMARK 500 THR 4 42 -167.96 -124.97 REMARK 500 PHE 4 44 -36.59 -135.42 REMARK 500 ASP 4 52 -106.12 50.21 REMARK 500 ILE 4 54 -144.23 33.42 REMARK 500 ARG 4 87 103.96 -170.52 REMARK 500 LEU 4 140 171.17 63.23 REMARK 500 ASN 4 186 149.50 67.74 REMARK 500 ILE 4 188 81.12 62.07 REMARK 500 GLN 5 39 -177.32 -177.31 REMARK 500 ALA 5 40 77.82 64.47 REMARK 500 PRO 5 41 -63.43 73.55 REMARK 500 LEU 5 51 52.43 -92.41 REMARK 500 ALA 5 54 155.64 67.53 REMARK 500 VAL 5 134 -55.02 -122.12 REMARK 500 MET 5 135 40.72 -101.17 REMARK 500 SER 5 142 -114.00 59.92 REMARK 500 GLN 5 143 -102.20 55.86 REMARK 500 ASP 5 157 -65.78 -177.32 REMARK 500 SER 5 160 -46.87 -148.39 REMARK 500 ASP 6 52 -105.53 41.30 REMARK 500 PHE 6 111 46.86 -94.08 REMARK 500 VAL 6 132 -57.34 91.66 REMARK 500 ARG 6 147 -7.51 64.39 REMARK 500 ASN 6 148 13.76 52.84 REMARK 500 ILE 6 196 -92.71 51.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CLA 3 604 REMARK 610 CLA 3 608 REMARK 610 CLA 3 610 REMARK 610 CLA 3 611 REMARK 610 CLA 3 612 REMARK 610 LMG 3 615 REMARK 610 LMG 3 616 REMARK 610 LHG 3 617 REMARK 610 CLA 3 619 REMARK 610 DGD 3 620 REMARK 610 CLA 4 305 REMARK 610 CLA 4 310 REMARK 610 CLA 4 311 REMARK 610 CLA 4 312 REMARK 610 CLA 4 313 REMARK 610 CLA 4 314 REMARK 610 CLA 4 315 REMARK 610 CLA 4 316 REMARK 610 A86 5 305 REMARK 610 CLA 5 308 REMARK 610 CLA 5 309 REMARK 610 CLA 5 311 REMARK 610 CLA 5 312 REMARK 610 CLA 5 314 REMARK 610 CLA 5 316 REMARK 610 CLA 5 317 REMARK 610 LHG 5 318 REMARK 610 LMG 5 319 REMARK 610 LMT 5 320 REMARK 610 CLA 6 306 REMARK 610 CLA 6 307 REMARK 610 CLA 6 309 REMARK 610 CLA 6 310 REMARK 610 CLA 6 312 REMARK 610 CLA 6 314 REMARK 610 CLA 6 315 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 3 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 3 154 OE1 REMARK 620 2 CLA 3 606 NA 118.0 REMARK 620 3 CLA 3 606 NB 72.2 92.0 REMARK 620 4 CLA 3 606 NC 63.7 176.7 91.2 REMARK 620 5 CLA 3 606 ND 106.2 90.8 177.2 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 3 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 3 200 OE2 REMARK 620 2 CLA 3 607 NA 82.8 REMARK 620 3 CLA 3 607 NB 66.3 92.0 REMARK 620 4 CLA 3 607 NC 99.2 176.6 91.2 REMARK 620 5 CLA 3 607 ND 114.9 90.7 177.2 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 3 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN 3 217 OE1 REMARK 620 2 CLA 3 610 NA 95.4 REMARK 620 3 CLA 3 610 NB 99.8 91.9 REMARK 620 4 CLA 3 610 NC 84.6 176.5 91.6 REMARK 620 5 CLA 3 610 ND 80.6 90.7 177.4 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 3 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG 3 617 O4 REMARK 620 2 CLA 3 608 NA 93.0 REMARK 620 3 CLA 3 608 NB 80.7 92.1 REMARK 620 4 CLA 3 608 NC 87.8 176.6 91.2 REMARK 620 5 CLA 3 608 ND 99.2 90.7 177.2 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 4 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 4 66 OE1 REMARK 620 2 CLA 4 306 NA 86.6 REMARK 620 3 CLA 4 306 NB 87.9 92.0 REMARK 620 4 CLA 4 306 NC 94.7 176.4 91.4 REMARK 620 5 CLA 4 306 ND 93.0 90.8 177.1 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 4 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN 4 119 OE1 REMARK 620 2 CLA 4 309 NA 106.5 REMARK 620 3 CLA 4 309 NB 115.5 92.1 REMARK 620 4 CLA 4 309 NC 72.3 176.7 91.2 REMARK 620 5 CLA 4 309 ND 64.1 90.6 177.3 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 4 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE 4 133 O REMARK 620 2 CLA 4 314 NA 93.0 REMARK 620 3 CLA 4 314 NB 101.9 91.7 REMARK 620 4 CLA 4 314 NC 88.1 176.5 91.3 REMARK 620 5 CLA 4 314 ND 79.0 90.8 177.3 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 4 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 4 154 OE2 REMARK 620 2 CLA 4 311 NA 86.1 REMARK 620 3 CLA 4 311 NB 70.3 91.6 REMARK 620 4 CLA 4 311 NC 96.7 176.4 91.5 REMARK 620 5 CLA 4 311 ND 111.0 90.8 177.3 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 4 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 4 167 OE2 REMARK 620 2 CLA 4 313 NA 96.0 REMARK 620 3 CLA 4 313 NB 89.4 91.7 REMARK 620 4 CLA 4 313 NC 84.4 176.7 91.6 REMARK 620 5 CLA 4 313 ND 90.7 90.9 177.4 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 5 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 5 66 OE2 REMARK 620 2 CLA 5 309 NA 96.2 REMARK 620 3 CLA 5 309 NB 76.3 92.0 REMARK 620 4 CLA 5 309 NC 85.2 176.6 91.3 REMARK 620 5 CLA 5 309 ND 104.0 90.7 177.3 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 5 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN 5 122 OE1 REMARK 620 2 CLA 5 312 NA 73.4 REMARK 620 3 CLA 5 312 NB 110.2 92.1 REMARK 620 4 CLA 5 312 NC 105.1 176.5 91.4 REMARK 620 5 CLA 5 312 ND 70.2 90.6 177.3 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 5 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 5 171 OE1 REMARK 620 2 CLA 5 314 NA 75.5 REMARK 620 3 CLA 5 314 NB 89.9 92.5 REMARK 620 4 CLA 5 314 NC 106.6 176.0 90.9 REMARK 620 5 CLA 5 314 ND 92.6 90.3 176.6 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 6 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 6 66 OE2 REMARK 620 2 CLA 6 307 NA 93.6 REMARK 620 3 CLA 6 307 NB 77.6 92.1 REMARK 620 4 CLA 6 307 NC 87.3 176.7 91.2 REMARK 620 5 CLA 6 307 ND 102.6 90.6 177.3 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA 6 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 6 129 OE2 REMARK 620 2 CLA 6 311 NA 100.1 REMARK 620 3 CLA 6 311 NB 84.8 92.1 REMARK 620 4 CLA 6 311 NC 80.1 176.6 91.3 REMARK 620 5 CLA 6 311 ND 94.6 90.6 177.3 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KC1 6 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN 6 173 OD1 REMARK 620 2 KC1 6 313 NB 98.1 REMARK 620 3 KC1 6 313 ND 99.4 161.8 REMARK 620 4 KC1 6 313 NA 110.6 90.0 88.7 REMARK 620 5 KC1 6 313 NC 87.8 88.0 87.5 161.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35899 RELATED DB: EMDB REMARK 900 FCP HETERODIMER, LHCA2, AND LHCF5 TOGETHER AS THE M1 SIDE BINDS TO REMARK 900 THE PSII CORE IN THE DIATOM THALASSIOSIRA PSEUDONANA DBREF 8J0D 3 31 250 UNP B8BUU4 B8BUU4_THAPS 31 250 DBREF 8J0D 4 33 195 UNP B8BVI1 B8BVI1_THAPS 33 195 DBREF 8J0D 5 33 192 UNP B8BX92 B8BX92_THAPS 33 192 DBREF 8J0D 6 32 199 UNP B8CEV5 B8CEV5_THAPS 32 199 SEQRES 1 3 220 TRP ASN GLU ALA PRO ARG ALA LEU PRO PHE GLY SER ALA SEQRES 2 3 220 PRO PRO THR LEU ASP GLY SER LEU VAL GLY ASP VAL GLY SEQRES 3 3 220 PHE ASP PRO ILE GLY PHE SER THR ALA PRO PHE ALA SER SEQRES 4 3 220 PHE ASN ASN PRO ILE TYR GLN GLU GLY ASN PHE MET THR SEQRES 5 3 220 ASP VAL GLN TRP LEU ARG GLU ALA GLU LEU THR HIS GLY SEQRES 6 3 220 ARG ILE ALA GLN LEU ALA VAL VAL GLY PHE ILE TRP PRO SEQRES 7 3 220 ALA LEU PHE GLY THR PHE PRO GLY ASN GLU ASN PHE GLY SEQRES 8 3 220 GLY ALA ASP ALA TYR SER TYR VAL ASN PRO LEU GLU ALA SEQRES 9 3 220 ILE ASN HIS ILE PRO SER LEU ALA ILE TYR GLN ILE VAL SEQRES 10 3 220 GLY GLY MET ALA TRP VAL GLU TYR GLN ARG VAL GLN ARG SEQRES 11 3 220 ILE LYS GLU GLN GLY LYS ASP ARG ILE SER GLY ASP ILE SEQRES 12 3 220 GLY LEU ALA TYR PRO GLY GLY TRP ASN PRO PHE ASN ILE SEQRES 13 3 220 ASN TYR SER PRO GLU GLU TYR ALA GLU LYS GLN LEU GLN SEQRES 14 3 220 GLU ILE LYS HIS CYS ARG LEU ALA MET LEU GLY ALA PHE SEQRES 15 3 220 GLY LEU PHE PHE GLN ALA LEU ASN SER GLY GLU ASP ILE SEQRES 16 3 220 VAL SER GLN LEU SER PRO ALA PHE ALA ALA PRO GLU TYR SEQRES 17 3 220 ALA ALA LYS ALA GLY TYR PHE LEU PRO GLN GLY ILE SEQRES 1 4 163 GLU ASN GLU ILE GLY VAL LEU PRO PRO THR GLY PHE PHE SEQRES 2 4 163 ASP PRO ALA GLY LEU SER ASP GLY ILE SER GLN GLU LYS SEQRES 3 4 163 PHE ASP SER TYR ARG LEU ALA GLU LEU LYS HIS GLY ARG SEQRES 4 4 163 ALA ALA MET LEU ALA VAL LEU GLY TYR VAL ALA PRO GLU SEQRES 5 4 163 THR TYR ARG PHE GLY TYR ASP LEU ILE PRO GLY GLU LEU SEQRES 6 4 163 SER THR ASN ASP ILE PRO ASN GLY VAL ALA ALA ILE LYS SEQRES 7 4 163 ALA ILE PRO PHE GLY GLY TRP ALA GLN MET ILE ALA PHE SEQRES 8 4 163 VAL GLY CYS VAL GLU THR TYR GLY TRP PHE THR SER PRO SEQRES 9 4 163 THR GLY VAL LEU ASP LEU PRO ASP ASP ILE LEU ALA LYS SEQRES 10 4 163 ARG GLN THR ALA GLU LEU GLN HIS GLY ARG LEU ALA MET SEQRES 11 4 163 LEU ALA PHE LEU GLU LEU ILE ARG HIS ASP SER GLN ASN SEQRES 12 4 163 LEU ALA GLN PRO GLY PHE ASP GLY LEU ASP ASN LEU ILE SEQRES 13 4 163 THR GLY LEU PRO PHE LEU TYR SEQRES 1 5 160 GLU SER GLU ILE GLY ALA GLN ALA PRO LEU GLY PHE TRP SEQRES 2 5 160 ASP PRO LEU GLY PHE LEU ASP ARG ALA ASP GLN GLU THR SEQRES 3 5 160 PHE ASP ARG LEU ARG TYR VAL GLU LEU LYS HIS GLY ARG SEQRES 4 5 160 ILE ALA GLN LEU ALA PHE VAL GLY ASN LEU ILE THR ARG SEQRES 5 5 160 ALA GLY TYR HIS LEU PRO GLY ASP ILE SER LEU GLY ARG SEQRES 6 5 160 ALA PHE ALA ASP VAL PRO ASN GLY ILE ALA ALA ILE ASN SEQRES 7 5 160 GLY PRO ASP ALA ILE SER THR ALA ALA LEU LEU GLN THR SEQRES 8 5 160 LEU ALA PHE ILE GLY PHE LEU GLU THR ARG VAL MET ILE SEQRES 9 5 160 ASP ALA THR GLY GLU SER GLN PHE ARG GLY ASP PHE ARG SEQRES 10 5 160 ASN GLY PHE ASP PHE GLY TRP ASP LYS GLN SER PRO GLU SEQRES 11 5 160 TRP GLN THR ASN LYS ARG ALA ILE GLU LEU ASN GLN GLY SEQRES 12 5 160 ARG ALA ALA MET MET GLY ILE LEU GLY LEU MET MET HIS SEQRES 13 5 160 GLU GLN VAL GLY SEQRES 1 6 168 PHE GLU ASN GLU LEU GLY ALA GLN PRO PRO LEU GLY PHE SEQRES 2 6 168 PHE ASP PRO LEU GLY MET LEU ASP GLU ALA GLY GLN ALA SEQRES 3 6 168 ARG PHE ASP ARG LEU ARG TYR VAL GLU LEU LYS HIS GLY SEQRES 4 6 168 ARG ILE CYS GLN LEU ALA PHE LEU GLY ASN ILE ILE THR SEQRES 5 6 168 ARG ALA GLY ILE HIS LEU PRO GLY ALA ILE SER LEU ASP SEQRES 6 6 168 GLY THR LYS PHE SER ASP ILE GLY ASN GLY TRP ALA GLY SEQRES 7 6 168 SER PHE GLU VAL PRO LYS ASP GLY ALA LEU GLN ILE LEU SEQRES 8 6 168 PHE PHE VAL GLY PHE LEU GLU LEU PHE VAL MET LYS ASP SEQRES 9 6 168 VAL THR GLY GLU GLY GLU PHE VAL GLY ASP PHE ARG ASN SEQRES 10 6 168 GLY ALA LEU ASP PHE GLY TRP ASP SER PHE SER GLU GLU SEQRES 11 6 168 THR LYS LEU GLN LYS ARG ALA ILE GLU LEU ASN ASN GLY SEQRES 12 6 168 ARG ALA ALA MET MET GLY ILE LEU GLY LEU MET VAL HIS SEQRES 13 6 168 GLU GLN LEU GLY GLY GLU LEU PRO ILE VAL GLY GLN HET CLA 3 601 65 HET CLA 3 602 65 HET CLA 3 603 65 HET CLA 3 604 48 HET CLA 3 605 65 HET CLA 3 606 65 HET CLA 3 607 65 HET CLA 3 608 51 HET KC1 3 609 45 HET CLA 3 610 41 HET CLA 3 611 56 HET CLA 3 612 61 HET A86 3 613 48 HET DD6 3 614 43 HET LMG 3 615 31 HET LMG 3 616 23 HET LHG 3 617 27 HET LHG 3 618 49 HET CLA 3 619 55 HET DGD 3 620 39 HET A86 4 301 48 HET A86 4 302 48 HET DD6 4 303 43 HET A86 4 304 48 HET CLA 4 305 55 HET CLA 4 306 65 HET KC2 4 307 45 HET CLA 4 308 65 HET CLA 4 309 65 HET CLA 4 310 46 HET CLA 4 311 60 HET CLA 4 312 51 HET CLA 4 313 41 HET CLA 4 314 56 HET CLA 4 315 47 HET CLA 4 316 52 HET LMT 4 317 35 HET LHG 4 318 49 HET A86 5 301 48 HET A86 5 302 48 HET A86 5 303 48 HET A86 5 304 48 HET A86 5 305 47 HET A86 5 306 48 HET A86 5 307 48 HET CLA 5 308 46 HET CLA 5 309 55 HET KC2 5 310 45 HET CLA 5 311 55 HET CLA 5 312 46 HET CLA 5 313 65 HET CLA 5 314 55 HET KC1 5 315 45 HET CLA 5 316 41 HET CLA 5 317 38 HET LHG 5 318 33 HET LMG 5 319 31 HET LMT 5 320 31 HET A86 5 321 48 HET A86 6 301 48 HET A86 6 302 48 HET A86 6 303 48 HET A86 6 304 48 HET A86 6 305 48 HET CLA 6 306 53 HET CLA 6 307 54 HET KC2 6 308 45 HET CLA 6 309 52 HET CLA 6 310 46 HET CLA 6 311 65 HET CLA 6 312 46 HET KC1 6 313 45 HET CLA 6 314 41 HET CLA 6 315 39 HETNAM CLA CHLOROPHYLL A HETNAM KC1 CHLOROPHYLL C1 HETNAM A86 (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-DIHYDROXY-8-OXO-6',7'- HETNAM 2 A86 DIDEHYDRO-5,5',6,6',7,8-HEXAHYDRO-5,6-EPOXY-BETA,BETA- HETNAM 3 A86 CAROTEN-3'- YL ACETATE HETNAM DD6 (3S,3'R,5R,6S,7CIS)-7',8'-DIDEHYDRO-5,6-DIHYDRO-5,6- HETNAM 2 DD6 EPOXY-BETA,BETA-CAROTENE-3,3'-DIOL HETNAM LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE HETNAM LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE HETNAM DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) HETNAM KC2 CHLOROPHYLL C2 HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETSYN A86 FUCOXANTHIN HETSYN DD6 DIADINOXANTHIN FORMUL 5 CLA 39(C55 H72 MG N4 O5) FORMUL 13 KC1 3(C35 H30 MG N4 O5) FORMUL 17 A86 17(C42 H58 O6) FORMUL 18 DD6 2(C40 H54 O3) FORMUL 19 LMG 3(C45 H86 O10) FORMUL 21 LHG 4(C38 H75 O10 P) FORMUL 24 DGD C51 H96 O15 FORMUL 31 KC2 3(C35 H28 MG N4 O5) FORMUL 41 LMT 2(C24 H46 O11) HELIX 1 AA1 THR 3 82 PHE 3 111 1 30 HELIX 2 AA2 ASN 3 130 ILE 3 135 1 6 HELIX 3 AA3 PRO 3 139 GLN 3 164 1 26 HELIX 4 AA4 SER 3 189 GLY 3 222 1 34 HELIX 5 AA5 ASP 3 224 SER 3 230 1 7 HELIX 6 AA6 PRO 3 231 PHE 3 233 5 3 HELIX 7 AA7 SER 4 55 TYR 4 80 1 26 HELIX 8 AA8 VAL 4 81 THR 4 85 5 5 HELIX 9 AA9 ALA 4 107 ILE 4 112 1 6 HELIX 10 AB1 PRO 4 113 TYR 4 130 1 18 HELIX 11 AB2 PRO 4 143 GLN 4 178 1 36 HELIX 12 AB3 LEU 4 191 TYR 4 195 5 5 HELIX 13 AB4 GLY 5 49 ARG 5 53 5 5 HELIX 14 AB5 ASP 5 55 GLY 5 86 1 32 HELIX 15 AB6 GLY 5 105 ILE 5 109 5 5 HELIX 16 AB7 SER 5 116 VAL 5 134 1 19 HELIX 17 AB8 GLU 5 162 GLY 5 192 1 31 HELIX 18 AB9 GLN 6 56 GLY 6 86 1 31 HELIX 19 AC1 LEU 6 89 ILE 6 93 5 5 HELIX 20 AC2 LYS 6 99 ILE 6 103 5 5 HELIX 21 AC3 TRP 6 107 PHE 6 111 5 5 HELIX 22 AC4 PRO 6 114 PHE 6 131 1 18 HELIX 23 AC5 PHE 6 146 ALA 6 150 5 5 HELIX 24 AC6 SER 6 159 GLY 6 191 1 33 SHEET 1 AA1 2 ASN 3 32 GLU 3 33 0 SHEET 2 AA1 2 SER 3 42 ALA 3 43 -1 O ALA 3 43 N ASN 3 32 SHEET 1 AA2 2 ASP 4 91 ILE 4 93 0 SHEET 2 AA2 2 GLU 4 96 SER 4 98 -1 O LEU 4 97 N LEU 4 92 SHEET 1 AA3 2 ASP 5 92 SER 5 94 0 SHEET 2 AA3 2 ARG 5 97 ALA 5 98 -1 O ARG 5 97 N ILE 5 93 LINK OE1 GLU 3 154 MG CLA 3 606 1555 1555 2.78 LINK OE2 GLU 3 200 MG CLA 3 607 1555 1555 2.11 LINK OE1 GLN 3 217 MG CLA 3 610 1555 1555 2.31 LINK MG CLA 3 608 O4 LHG 3 617 1555 1555 2.09 LINK OE1 GLU 4 66 MG CLA 4 306 1555 1555 2.21 LINK OE1 GLN 4 119 MG CLA 4 309 1555 1555 2.23 LINK O PHE 4 133 MG CLA 4 314 1555 1555 2.68 LINK OE2 GLU 4 154 MG CLA 4 311 1555 1555 2.06 LINK OE2 GLU 4 167 MG CLA 4 313 1555 1555 2.05 LINK OE2 GLU 5 66 MG CLA 5 309 1555 1555 2.51 LINK OE1 GLN 5 122 MG CLA 5 312 1555 1555 2.86 LINK OE1 GLU 5 171 MG CLA 5 314 1555 1555 2.17 LINK OE2 GLU 6 66 MG CLA 6 307 1555 1555 2.61 LINK OE2 GLU 6 129 MG CLA 6 311 1555 1555 2.01 LINK OD1 ASN 6 173 MG KC1 6 313 1555 1555 2.24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000