HEADER DNA BINDING PROTEIN/DNA 11-APR-23 8J0R TITLE STRUCTURE OF HUMAN TFAP2A IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR AP-2-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AP2-ALPHA,AP-2 TRANSCRIPTION FACTOR,ACTIVATING ENHANCER- COMPND 5 BINDING PROTEIN 2-ALPHA,ACTIVATOR PROTEIN 2,AP-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*TP*GP*CP*CP*TP*CP*AP*GP*GP*CP*AP*C)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*TP*GP*CP*CP*TP*GP*AP*GP*GP*CP*AP*G)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TFAP2A, AP2TF, TFAP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS TFAP2 FAMILY, DNA BINDING PROTEIN/DNA, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.LIU,Y.Q.XIAO,W.F.LI,J.R.MIN REVDAT 3 06-SEP-23 8J0R 1 JRNL REVDAT 2 30-AUG-23 8J0R 1 JRNL REVDAT 1 05-JUL-23 8J0R 0 JRNL AUTH K.LIU,Y.XIAO,L.GAN,W.LI,J.ZHANG,J.MIN JRNL TITL STRUCTURAL BASIS FOR SPECIFIC DNA SEQUENCE MOTIF RECOGNITION JRNL TITL 2 BY THE TFAP2 TRANSCRIPTION FACTORS. JRNL REF NUCLEIC ACIDS RES. V. 51 8270 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37409559 JRNL DOI 10.1093/NAR/GKAD583 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3243 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.972 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3959 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3557 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5432 ; 1.789 ; 1.564 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8277 ; 1.494 ; 1.691 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;31.979 ;21.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 588 ;13.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4002 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 799 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1694 ; 3.168 ; 3.212 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1693 ; 3.165 ; 3.209 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2114 ; 3.994 ; 4.791 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2115 ; 3.994 ; 4.795 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2265 ; 4.861 ; 3.835 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2264 ; 4.861 ; 3.835 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3319 ; 6.910 ; 5.522 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4674 ; 8.398 ;39.329 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4596 ; 8.344 ;38.901 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8J0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 108.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID (PH3.5), 34% PEG 200 REMARK 280 (W/V)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.61133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.30567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.30567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.61133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 202 REMARK 465 PRO A 418 REMARK 465 ASN A 419 REMARK 465 SER A 420 REMARK 465 GLY B 202 REMARK 465 GLY B 203 REMARK 465 VAL B 204 REMARK 465 LEU B 414 REMARK 465 SER B 415 REMARK 465 ASN B 416 REMARK 465 ASN B 417 REMARK 465 PRO B 418 REMARK 465 ASN B 419 REMARK 465 SER B 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 347 CD GLU B 347 OE1 0.158 REMARK 500 DA C 8 O3' DG C 9 P -0.105 REMARK 500 DT D 2 O3' DG D 3 P -0.113 REMARK 500 DA D 8 O3' DG D 9 P -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 11 O5' - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC C 4 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 750 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 751 DISTANCE = 7.29 ANGSTROMS DBREF 8J0R A 202 420 UNP P05549 AP2A_HUMAN 196 414 DBREF 8J0R B 202 420 UNP P05549 AP2A_HUMAN 196 414 DBREF 8J0R C 1 13 PDB 8J0R 8J0R 1 13 DBREF 8J0R D 1 13 PDB 8J0R 8J0R 1 13 SEQRES 1 A 219 GLY GLY VAL VAL ASN PRO ASN GLU VAL PHE CYS SER VAL SEQRES 2 A 219 PRO GLY ARG LEU SER LEU LEU SER SER THR SER LYS TYR SEQRES 3 A 219 LYS VAL THR VAL ALA GLU VAL GLN ARG ARG LEU SER PRO SEQRES 4 A 219 PRO GLU CYS LEU ASN ALA SER LEU LEU GLY GLY VAL LEU SEQRES 5 A 219 ARG ARG ALA LYS SER LYS ASN GLY GLY ARG SER LEU ARG SEQRES 6 A 219 GLU LYS LEU ASP LYS ILE GLY LEU ASN LEU PRO ALA GLY SEQRES 7 A 219 ARG ARG LYS ALA ALA ASN VAL THR LEU LEU THR SER LEU SEQRES 8 A 219 VAL GLU GLY GLU ALA VAL HIS LEU ALA ARG ASP PHE GLY SEQRES 9 A 219 TYR VAL CYS GLU THR GLU PHE PRO ALA LYS ALA VAL ALA SEQRES 10 A 219 GLU PHE LEU ASN ARG GLN HIS SER ASP PRO ASN GLU GLN SEQRES 11 A 219 VAL THR ARG LYS ASN MET LEU LEU ALA THR LYS GLN ILE SEQRES 12 A 219 CYS LYS GLU PHE THR ASP LEU LEU ALA GLN ASP ARG SER SEQRES 13 A 219 PRO LEU GLY ASN SER ARG PRO ASN PRO ILE LEU GLU PRO SEQRES 14 A 219 GLY ILE GLN SER CYS LEU THR HIS PHE ASN LEU ILE SER SEQRES 15 A 219 HIS GLY PHE GLY SER PRO ALA VAL CYS ALA ALA VAL THR SEQRES 16 A 219 ALA LEU GLN ASN TYR LEU THR GLU ALA LEU LYS ALA MET SEQRES 17 A 219 ASP LYS MET TYR LEU SER ASN ASN PRO ASN SER SEQRES 1 B 219 GLY GLY VAL VAL ASN PRO ASN GLU VAL PHE CYS SER VAL SEQRES 2 B 219 PRO GLY ARG LEU SER LEU LEU SER SER THR SER LYS TYR SEQRES 3 B 219 LYS VAL THR VAL ALA GLU VAL GLN ARG ARG LEU SER PRO SEQRES 4 B 219 PRO GLU CYS LEU ASN ALA SER LEU LEU GLY GLY VAL LEU SEQRES 5 B 219 ARG ARG ALA LYS SER LYS ASN GLY GLY ARG SER LEU ARG SEQRES 6 B 219 GLU LYS LEU ASP LYS ILE GLY LEU ASN LEU PRO ALA GLY SEQRES 7 B 219 ARG ARG LYS ALA ALA ASN VAL THR LEU LEU THR SER LEU SEQRES 8 B 219 VAL GLU GLY GLU ALA VAL HIS LEU ALA ARG ASP PHE GLY SEQRES 9 B 219 TYR VAL CYS GLU THR GLU PHE PRO ALA LYS ALA VAL ALA SEQRES 10 B 219 GLU PHE LEU ASN ARG GLN HIS SER ASP PRO ASN GLU GLN SEQRES 11 B 219 VAL THR ARG LYS ASN MET LEU LEU ALA THR LYS GLN ILE SEQRES 12 B 219 CYS LYS GLU PHE THR ASP LEU LEU ALA GLN ASP ARG SER SEQRES 13 B 219 PRO LEU GLY ASN SER ARG PRO ASN PRO ILE LEU GLU PRO SEQRES 14 B 219 GLY ILE GLN SER CYS LEU THR HIS PHE ASN LEU ILE SER SEQRES 15 B 219 HIS GLY PHE GLY SER PRO ALA VAL CYS ALA ALA VAL THR SEQRES 16 B 219 ALA LEU GLN ASN TYR LEU THR GLU ALA LEU LYS ALA MET SEQRES 17 B 219 ASP LYS MET TYR LEU SER ASN ASN PRO ASN SER SEQRES 1 C 13 DC DT DG DC DC DT DC DA DG DG DC DA DC SEQRES 1 D 13 DG DT DG DC DC DT DG DA DG DG DC DA DG HET PG3 A 501 8 HET GOL A 502 6 HET PG4 A 503 13 HET PG4 A 504 13 HET GOL A 505 6 HET PEG B 501 7 HET GOL B 502 6 HET GOL B 503 6 HET PEG B 504 7 HET PEG B 505 7 HET GOL C 101 6 HETNAM PG3 GUANIDINE-3-PROPANOL HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PG3 C4 H12 N3 O 1+ FORMUL 6 GOL 5(C3 H8 O3) FORMUL 7 PG4 2(C8 H18 O5) FORMUL 10 PEG 3(C4 H10 O3) FORMUL 16 HOH *357(H2 O) HELIX 1 AA1 ASN A 206 ASN A 208 5 3 HELIX 2 AA2 VAL A 231 SER A 239 1 9 HELIX 3 AA3 ASN A 245 LEU A 253 1 9 HELIX 4 AA4 ASN A 260 ILE A 272 1 13 HELIX 5 AA5 THR A 287 LEU A 292 5 6 HELIX 6 AA6 VAL A 293 GLU A 311 1 19 HELIX 7 AA7 PRO A 313 HIS A 325 1 13 HELIX 8 AA8 SER A 326 ASN A 329 5 4 HELIX 9 AA9 GLU A 330 GLN A 354 1 25 HELIX 10 AB1 GLU A 369 HIS A 384 1 16 HELIX 11 AB2 PHE A 386 LYS A 411 1 26 HELIX 12 AB3 LYS A 411 ASN A 417 1 7 HELIX 13 AB4 ASN B 206 ASN B 208 5 3 HELIX 14 AB5 VAL B 231 SER B 239 1 9 HELIX 15 AB6 ASN B 245 LEU B 253 1 9 HELIX 16 AB7 ASN B 260 ILE B 272 1 13 HELIX 17 AB8 THR B 287 LEU B 292 5 6 HELIX 18 AB9 VAL B 293 PHE B 312 1 20 HELIX 19 AC1 PRO B 313 GLN B 324 1 12 HELIX 20 AC2 ASP B 327 ASN B 329 5 3 HELIX 21 AC3 GLU B 330 GLN B 354 1 25 HELIX 22 AC4 GLU B 369 HIS B 384 1 16 HELIX 23 AC5 PHE B 386 MET B 412 1 27 SHEET 1 AA1 2 VAL A 210 VAL A 214 0 SHEET 2 AA1 2 TYR A 227 THR A 230 -1 O VAL A 229 N CYS A 212 SHEET 1 AA2 2 VAL B 210 VAL B 214 0 SHEET 2 AA2 2 TYR B 227 THR B 230 -1 O TYR B 227 N VAL B 214 CISPEP 1 PRO A 240 PRO A 241 0 6.55 CISPEP 2 PRO B 240 PRO B 241 0 8.24 CRYST1 124.790 124.790 96.917 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008013 0.004627 0.000000 0.00000 SCALE2 0.000000 0.009253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010318 0.00000