HEADER IMMUNE SYSTEM 12-APR-23 8J18 TITLE CRYO-EM STRUCTURE OF THE 3-OH-C12-BOUND GPR84 RECEPTOR-GI COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 9 BETA-1; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 14 GAMMA-2; COMPND 15 CHAIN: G; COMPND 16 SYNONYM: G GAMMA-I; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: G-PROTEIN COUPLED RECEPTOR 84; COMPND 20 CHAIN: R; COMPND 21 SYNONYM: INFLAMMATION-RELATED G-PROTEIN COUPLED RECEPTOR EX33; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: ANTIBODY FRAGMENT SCFV16; COMPND 25 CHAIN: S; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNAI1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GNB1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: GNG2; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: GPR84; SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 29 MOL_ID: 5; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 32 ORGANISM_TAXID: 32630 KEYWDS GPCR, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR H.LIU,W.YIN,H.E.XU REVDAT 3 08-MAY-24 8J18 1 JRNL REVDAT 2 05-JUL-23 8J18 1 REMARK REVDAT 1 21-JUN-23 8J18 0 JRNL AUTH H.LIU,Q.ZHANG,X.HE,M.JIANG,S.WANG,X.YAN,X.CHENG,Y.LIU, JRNL AUTH 2 F.J.NAN,H.E.XU,X.XIE,W.YIN JRNL TITL STRUCTURAL INSIGHTS INTO LIGAND RECOGNITION AND ACTIVATION JRNL TITL 2 OF THE MEDIUM-CHAIN FATTY ACID-SENSING RECEPTOR GPR84. JRNL REF NAT COMMUN V. 14 3271 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37277332 JRNL DOI 10.1038/S41467-023-38985-6 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.890 REMARK 3 NUMBER OF PARTICLES : 213390 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8J18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037004. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 3-OH-C12-BOUND GPR84 RECEPTOR REMARK 245 -GI COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 ILE A 56 REMARK 465 HIS A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 TYR A 61 REMARK 465 SER A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 CYS A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 TYR A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 VAL A 72 REMARK 465 VAL A 73 REMARK 465 TYR A 74 REMARK 465 SER A 75 REMARK 465 ASN A 76 REMARK 465 THR A 77 REMARK 465 ILE A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 ILE A 81 REMARK 465 ILE A 82 REMARK 465 ALA A 83 REMARK 465 ILE A 84 REMARK 465 ILE A 85 REMARK 465 ARG A 86 REMARK 465 ALA A 87 REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 ASP A 103 REMARK 465 ALA A 104 REMARK 465 ARG A 105 REMARK 465 GLN A 106 REMARK 465 LEU A 107 REMARK 465 PHE A 108 REMARK 465 VAL A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 MET A 119 REMARK 465 THR A 120 REMARK 465 ALA A 121 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 GLY A 125 REMARK 465 VAL A 126 REMARK 465 ILE A 127 REMARK 465 LYS A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 TRP A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 VAL A 136 REMARK 465 GLN A 137 REMARK 465 ALA A 138 REMARK 465 CYS A 139 REMARK 465 PHE A 140 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 TYR A 146 REMARK 465 GLN A 147 REMARK 465 LEU A 148 REMARK 465 ASN A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 TYR A 154 REMARK 465 TYR A 155 REMARK 465 LEU A 156 REMARK 465 ASN A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ALA A 163 REMARK 465 GLN A 164 REMARK 465 PRO A 165 REMARK 465 ASN A 166 REMARK 465 TYR A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 THR A 170 REMARK 465 GLN A 171 REMARK 465 GLN A 172 REMARK 465 ASP A 173 REMARK 465 VAL A 174 REMARK 465 LEU A 175 REMARK 465 ARG A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 LYS A 180 REMARK 465 THR A 181 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 MET A 240 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LEU B -1 REMARK 465 LEU B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 341 REMARK 465 SER B 342 REMARK 465 SER B 343 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASN G 4 REMARK 465 ASN G 5 REMARK 465 THR G 6 REMARK 465 LYS G 65 REMARK 465 PHE G 66 REMARK 465 PHE G 67 REMARK 465 CYS G 68 REMARK 465 ALA G 69 REMARK 465 ILE G 70 REMARK 465 LEU G 71 REMARK 465 HIS R -9 REMARK 465 HIS R -8 REMARK 465 HIS R -7 REMARK 465 HIS R -6 REMARK 465 HIS R -5 REMARK 465 HIS R -4 REMARK 465 HIS R -3 REMARK 465 HIS R -2 REMARK 465 HIS R -1 REMARK 465 HIS R 0 REMARK 465 MET R 1 REMARK 465 TRP R 2 REMARK 465 ASN R 3 REMARK 465 SER R 4 REMARK 465 SER R 5 REMARK 465 ASP R 6 REMARK 465 ALA R 7 REMARK 465 ARG R 218 REMARK 465 GLN R 219 REMARK 465 ALA R 220 REMARK 465 SER R 221 REMARK 465 ILE R 222 REMARK 465 HIS R 223 REMARK 465 SER R 224 REMARK 465 ASN R 225 REMARK 465 HIS R 226 REMARK 465 VAL R 227 REMARK 465 ALA R 228 REMARK 465 ARG R 229 REMARK 465 THR R 230 REMARK 465 ASP R 231 REMARK 465 GLU R 232 REMARK 465 ALA R 233 REMARK 465 MET R 234 REMARK 465 PRO R 235 REMARK 465 GLY R 236 REMARK 465 ARG R 237 REMARK 465 PHE R 238 REMARK 465 GLN R 239 REMARK 465 GLU R 240 REMARK 465 LEU R 241 REMARK 465 ASP R 242 REMARK 465 SER R 243 REMARK 465 ARG R 244 REMARK 465 LEU R 245 REMARK 465 ALA R 246 REMARK 465 SER R 247 REMARK 465 GLY R 248 REMARK 465 GLY R 249 REMARK 465 PRO R 250 REMARK 465 SER R 251 REMARK 465 GLU R 252 REMARK 465 GLY R 253 REMARK 465 ILE R 254 REMARK 465 SER R 255 REMARK 465 SER R 256 REMARK 465 GLU R 257 REMARK 465 PRO R 258 REMARK 465 VAL R 259 REMARK 465 SER R 260 REMARK 465 ALA R 261 REMARK 465 ALA R 262 REMARK 465 THR R 263 REMARK 465 THR R 264 REMARK 465 GLN R 265 REMARK 465 THR R 266 REMARK 465 LEU R 267 REMARK 465 GLU R 268 REMARK 465 GLY R 269 REMARK 465 ASP R 270 REMARK 465 SER R 271 REMARK 465 SER R 272 REMARK 465 GLU R 273 REMARK 465 VAL R 274 REMARK 465 GLY R 275 REMARK 465 ASP R 276 REMARK 465 GLN R 277 REMARK 465 ILE R 278 REMARK 465 ASN R 279 REMARK 465 SER R 280 REMARK 465 LYS R 281 REMARK 465 ARG R 282 REMARK 465 ALA R 283 REMARK 465 LYS R 284 REMARK 465 GLN R 285 REMARK 465 MET R 286 REMARK 465 ALA R 287 REMARK 465 GLU R 288 REMARK 465 LYS R 289 REMARK 465 SER R 290 REMARK 465 PRO R 291 REMARK 465 PRO R 292 REMARK 465 GLU R 293 REMARK 465 ALA R 294 REMARK 465 SER R 295 REMARK 465 ALA R 296 REMARK 465 LYS R 297 REMARK 465 ALA R 298 REMARK 465 GLN R 299 REMARK 465 PRO R 300 REMARK 465 ILE R 301 REMARK 465 LYS R 302 REMARK 465 GLY R 303 REMARK 465 ALA R 304 REMARK 465 ARG R 305 REMARK 465 ARG R 306 REMARK 465 ALA R 307 REMARK 465 PRO R 308 REMARK 465 ASP R 309 REMARK 465 SER R 310 REMARK 465 SER R 311 REMARK 465 SER R 312 REMARK 465 GLU R 313 REMARK 465 PHE R 314 REMARK 465 HIS R 396 REMARK 465 ASP S 1 REMARK 465 GLY S 122 REMARK 465 GLY S 123 REMARK 465 GLY S 124 REMARK 465 GLY S 125 REMARK 465 SER S 126 REMARK 465 GLY S 127 REMARK 465 GLY S 128 REMARK 465 GLY S 129 REMARK 465 GLY S 130 REMARK 465 SER S 131 REMARK 465 GLY S 132 REMARK 465 GLY S 133 REMARK 465 GLY S 134 REMARK 465 GLY S 135 REMARK 465 LYS S 248 REMARK 465 GLY S 249 REMARK 465 SER S 250 REMARK 465 LEU S 251 REMARK 465 GLU S 252 REMARK 465 VAL S 253 REMARK 465 LEU S 254 REMARK 465 PHE S 255 REMARK 465 GLN S 256 REMARK 465 GLY S 257 REMARK 465 PRO S 258 REMARK 465 ALA S 259 REMARK 465 ALA S 260 REMARK 465 ALA S 261 REMARK 465 HIS S 262 REMARK 465 HIS S 263 REMARK 465 HIS S 264 REMARK 465 HIS S 265 REMARK 465 HIS S 266 REMARK 465 HIS S 267 REMARK 465 HIS S 268 REMARK 465 HIS S 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 290 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER S 17 OG REMARK 470 GLU S 42 CG CD OE1 OE2 REMARK 470 SER S 52 OG REMARK 470 ASP S 73 CG OD1 OD2 REMARK 470 GLU S 89 CG CD OE1 OE2 REMARK 470 SER S 121 OG REMARK 470 SER S 136 OG REMARK 470 GLU S 153 CG CD OE1 OE2 REMARK 470 MET S 192 CG SD CE REMARK 470 ASP S 201 CG OD1 OD2 REMARK 470 THR S 210 OG1 CG2 REMARK 470 GLU S 222 CG CD OE1 OE2 REMARK 470 GLU S 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 193 27.35 46.44 REMARK 500 PHE A 215 32.83 -99.74 REMARK 500 ALA A 291 -178.96 -69.31 REMARK 500 CYS A 325 52.89 -92.91 REMARK 500 THR B 143 32.23 -97.38 REMARK 500 ASP B 291 33.52 -94.63 REMARK 500 ARG B 314 119.74 -34.70 REMARK 500 SER B 334 30.16 74.93 REMARK 500 THR R 80 -6.95 74.46 REMARK 500 VAL R 350 -47.11 69.62 REMARK 500 MET S 192 -8.01 74.70 REMARK 500 GLU S 222 -5.59 76.67 REMARK 500 PRO S 236 76.73 -68.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35913 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE 3-OH-C12-BOUND GPR84 RECEPTOR-GI COMPLEX REMARK 900 RELATED ID: EMD-35915 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-35914 RELATED DB: EMDB REMARK 900 RELATED ID: 8J1A RELATED DB: PDB REMARK 900 RELATED ID: 8J19 RELATED DB: PDB DBREF 8J18 A 1 354 UNP P63096 GNAI1_HUMAN 1 354 DBREF 8J18 B 2 340 UNP P62873 GBB1_HUMAN 2 340 DBREF 8J18 G 1 71 UNP P59768 GBG2_HUMAN 1 71 DBREF 8J18 R 1 396 UNP Q9NQS5 GPR84_HUMAN 1 396 DBREF 8J18 S 1 269 PDB 8J18 8J18 1 269 SEQADV 8J18 ASN A 47 UNP P63096 SER 47 ENGINEERED MUTATION SEQADV 8J18 ALA A 203 UNP P63096 GLY 203 ENGINEERED MUTATION SEQADV 8J18 ALA A 245 UNP P63096 GLU 245 ENGINEERED MUTATION SEQADV 8J18 SER A 326 UNP P63096 ALA 326 ENGINEERED MUTATION SEQADV 8J18 MET B -4 UNP P62873 INITIATING METHIONINE SEQADV 8J18 GLY B -3 UNP P62873 EXPRESSION TAG SEQADV 8J18 SER B -2 UNP P62873 EXPRESSION TAG SEQADV 8J18 LEU B -1 UNP P62873 EXPRESSION TAG SEQADV 8J18 LEU B 0 UNP P62873 EXPRESSION TAG SEQADV 8J18 GLN B 1 UNP P62873 EXPRESSION TAG SEQADV 8J18 GLY B 341 UNP P62873 EXPRESSION TAG SEQADV 8J18 SER B 342 UNP P62873 EXPRESSION TAG SEQADV 8J18 SER B 343 UNP P62873 EXPRESSION TAG SEQADV 8J18 HIS R -9 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -8 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -7 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -6 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -5 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -4 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -3 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -2 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R -1 UNP Q9NQS5 EXPRESSION TAG SEQADV 8J18 HIS R 0 UNP Q9NQS5 EXPRESSION TAG SEQRES 1 A 354 MET GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL SEQRES 2 A 354 GLU ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP SEQRES 3 A 354 GLY GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU SEQRES 4 A 354 GLY ALA GLY GLU SER GLY LYS ASN THR ILE VAL LYS GLN SEQRES 5 A 354 MET LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU SEQRES 6 A 354 CYS LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE SEQRES 7 A 354 GLN SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU SEQRES 8 A 354 LYS ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA SEQRES 9 A 354 ARG GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY SEQRES 10 A 354 PHE MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU SEQRES 11 A 354 TRP LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER SEQRES 12 A 354 ARG GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU SEQRES 13 A 354 ASN ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO SEQRES 14 A 354 THR GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR SEQRES 15 A 354 GLY ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS SEQRES 16 A 354 PHE LYS MET PHE ASP VAL GLY ALA GLN ARG SER GLU ARG SEQRES 17 A 354 LYS LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE SEQRES 18 A 354 ILE PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU SEQRES 19 A 354 ALA GLU ASP GLU GLU MET ASN ARG MET HIS ALA SER MET SEQRES 20 A 354 LYS LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR SEQRES 21 A 354 ASP THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU SEQRES 22 A 354 PHE GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS SEQRES 23 A 354 TYR PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA SEQRES 24 A 354 ALA ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS SEQRES 25 A 354 ARG LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS SEQRES 26 A 354 SER THR ASP THR LYS ASN VAL GLN PHE VAL PHE ASP ALA SEQRES 27 A 354 VAL THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS SEQRES 28 A 354 GLY LEU PHE SEQRES 1 B 348 MET GLY SER LEU LEU GLN SER GLU LEU ASP GLN LEU ARG SEQRES 2 B 348 GLN GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA SEQRES 3 B 348 ARG LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR SEQRES 4 B 348 ASN ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR SEQRES 5 B 348 ARG ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA SEQRES 6 B 348 MET HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SEQRES 7 B 348 SER GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR SEQRES 8 B 348 THR ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP SEQRES 9 B 348 VAL MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL SEQRES 10 B 348 ALA CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN SEQRES 11 B 348 LEU LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU SEQRES 12 B 348 LEU ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE SEQRES 13 B 348 LEU ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR SEQRES 14 B 348 THR CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR SEQRES 15 B 348 THR THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SEQRES 16 B 348 SER LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA SEQRES 17 B 348 CYS ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY SEQRES 18 B 348 MET CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE SEQRES 19 B 348 ASN ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA SEQRES 20 B 348 THR GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU SEQRES 21 B 348 ARG ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN SEQRES 22 B 348 ILE ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER SEQRES 23 B 348 GLY ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS SEQRES 24 B 348 ASN VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL SEQRES 25 B 348 LEU ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL SEQRES 26 B 348 THR ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SEQRES 27 B 348 SER PHE LEU LYS ILE TRP ASN GLY SER SER SEQRES 1 G 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG SEQRES 2 G 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP SEQRES 3 G 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA SEQRES 4 G 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR SEQRES 5 G 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS SEQRES 6 G 71 PHE PHE CYS ALA ILE LEU SEQRES 1 R 406 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS MET TRP ASN SEQRES 2 R 406 SER SER ASP ALA ASN PHE SER CYS TYR HIS GLU SER VAL SEQRES 3 R 406 LEU GLY TYR ARG TYR VAL ALA VAL SER TRP GLY VAL VAL SEQRES 4 R 406 VAL ALA VAL THR GLY THR VAL GLY ASN VAL LEU THR LEU SEQRES 5 R 406 LEU ALA LEU ALA ILE GLN PRO LYS LEU ARG THR ARG PHE SEQRES 6 R 406 ASN LEU LEU ILE ALA ASN LEU THR LEU ALA ASP LEU LEU SEQRES 7 R 406 TYR CYS THR LEU LEU GLN PRO PHE SER VAL ASP THR TYR SEQRES 8 R 406 LEU HIS LEU HIS TRP ARG THR GLY ALA THR PHE CYS ARG SEQRES 9 R 406 VAL PHE GLY LEU LEU LEU PHE ALA SER ASN SER VAL SER SEQRES 10 R 406 ILE LEU THR LEU CYS LEU ILE ALA LEU GLY ARG TYR LEU SEQRES 11 R 406 LEU ILE ALA HIS PRO LYS LEU PHE PRO GLN VAL PHE SER SEQRES 12 R 406 ALA LYS GLY ILE VAL LEU ALA LEU VAL SER THR TRP VAL SEQRES 13 R 406 VAL GLY VAL ALA SER PHE ALA PRO LEU TRP PRO ILE TYR SEQRES 14 R 406 ILE LEU VAL PRO VAL VAL CYS THR CYS SER PHE ASP ARG SEQRES 15 R 406 ILE ARG GLY ARG PRO TYR THR THR ILE LEU MET GLY ILE SEQRES 16 R 406 TYR PHE VAL LEU GLY LEU SER SER VAL GLY ILE PHE TYR SEQRES 17 R 406 CYS LEU ILE HIS ARG GLN VAL LYS ARG ALA ALA GLN ALA SEQRES 18 R 406 LEU ASP GLN TYR LYS LEU ARG GLN ALA SER ILE HIS SER SEQRES 19 R 406 ASN HIS VAL ALA ARG THR ASP GLU ALA MET PRO GLY ARG SEQRES 20 R 406 PHE GLN GLU LEU ASP SER ARG LEU ALA SER GLY GLY PRO SEQRES 21 R 406 SER GLU GLY ILE SER SER GLU PRO VAL SER ALA ALA THR SEQRES 22 R 406 THR GLN THR LEU GLU GLY ASP SER SER GLU VAL GLY ASP SEQRES 23 R 406 GLN ILE ASN SER LYS ARG ALA LYS GLN MET ALA GLU LYS SEQRES 24 R 406 SER PRO PRO GLU ALA SER ALA LYS ALA GLN PRO ILE LYS SEQRES 25 R 406 GLY ALA ARG ARG ALA PRO ASP SER SER SER GLU PHE GLY SEQRES 26 R 406 LYS VAL THR ARG MET CYS PHE ALA VAL PHE LEU CYS PHE SEQRES 27 R 406 ALA LEU SER TYR ILE PRO PHE LEU LEU LEU ASN ILE LEU SEQRES 28 R 406 ASP ALA ARG VAL GLN ALA PRO ARG VAL VAL HIS MET LEU SEQRES 29 R 406 ALA ALA ASN LEU THR TRP LEU ASN GLY CYS ILE ASN PRO SEQRES 30 R 406 VAL LEU TYR ALA ALA MET ASN ARG GLN PHE ARG GLN ALA SEQRES 31 R 406 TYR GLY SER ILE LEU LYS ARG GLY PRO ARG SER PHE HIS SEQRES 32 R 406 ARG LEU HIS SEQRES 1 S 269 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 S 269 PRO GLY GLY SER ARG LYS LEU SER CYS SER ALA SER GLY SEQRES 3 S 269 PHE ALA PHE SER SER PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 S 269 ALA PRO GLU LYS GLY LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 S 269 SER GLY SER GLY THR ILE TYR TYR ALA ASP THR VAL LYS SEQRES 6 S 269 GLY ARG PHE THR ILE SER ARG ASP ASP PRO LYS ASN THR SEQRES 7 S 269 LEU PHE LEU GLN MET THR SER LEU ARG SER GLU ASP THR SEQRES 8 S 269 ALA MET TYR TYR CYS VAL ARG SER ILE TYR TYR TYR GLY SEQRES 9 S 269 SER SER PRO PHE ASP PHE TRP GLY GLN GLY THR THR LEU SEQRES 10 S 269 THR VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 11 S 269 SER GLY GLY GLY GLY SER ASP ILE VAL MET THR GLN ALA SEQRES 12 S 269 THR SER SER VAL PRO VAL THR PRO GLY GLU SER VAL SER SEQRES 13 S 269 ILE SER CYS ARG SER SER LYS SER LEU LEU HIS SER ASN SEQRES 14 S 269 GLY ASN THR TYR LEU TYR TRP PHE LEU GLN ARG PRO GLY SEQRES 15 S 269 GLN SER PRO GLN LEU LEU ILE TYR ARG MET SER ASN LEU SEQRES 16 S 269 ALA SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER SEQRES 17 S 269 GLY THR ALA PHE THR LEU THR ILE SER ARG LEU GLU ALA SEQRES 18 S 269 GLU ASP VAL GLY VAL TYR TYR CYS MET GLN HIS LEU GLU SEQRES 19 S 269 TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU LEU SEQRES 20 S 269 LYS GLY SER LEU GLU VAL LEU PHE GLN GLY PRO ALA ALA SEQRES 21 S 269 ALA HIS HIS HIS HIS HIS HIS HIS HIS HET HXD R 401 15 HETNAM HXD (3R)-3-HYDROXYDODECANOIC ACID HETSYN HXD 3-OH-DODECANOATE FORMUL 6 HXD C12 H24 O3 HELIX 1 AA1 SER A 6 GLU A 33 1 28 HELIX 2 AA2 GLY A 45 LYS A 54 1 10 HELIX 3 AA3 GLU A 207 GLU A 216 5 10 HELIX 4 AA4 SER A 228 TYR A 230 5 3 HELIX 5 AA5 ARG A 242 ASN A 256 1 15 HELIX 6 AA6 LYS A 271 LYS A 279 1 9 HELIX 7 AA7 PRO A 282 CYS A 286 5 5 HELIX 8 AA8 THR A 295 LEU A 310 1 16 HELIX 9 AA9 ASP A 328 CYS A 351 1 24 HELIX 10 AB1 ASP B 5 ALA B 26 1 22 HELIX 11 AB2 THR B 29 THR B 34 1 6 HELIX 12 AB3 SER G 8 ASN G 24 1 17 HELIX 13 AB4 LYS G 29 HIS G 44 1 16 HELIX 14 AB5 ALA G 45 ASP G 48 5 4 HELIX 15 AB6 TYR R 19 GLN R 48 1 30 HELIX 16 AB7 PRO R 49 ARG R 52 5 4 HELIX 17 AB8 PHE R 55 LEU R 72 1 18 HELIX 18 AB9 GLN R 74 ASP R 79 1 6 HELIX 19 AC1 ALA R 90 HIS R 124 1 35 HELIX 20 AC2 LEU R 127 PHE R 132 1 6 HELIX 21 AC3 SER R 133 ALA R 153 1 21 HELIX 22 AC4 LEU R 155 PRO R 157 5 3 HELIX 23 AC5 GLY R 175 ASP R 213 1 39 HELIX 24 AC6 GLN R 214 LYS R 216 5 3 HELIX 25 AC7 LYS R 316 ASP R 342 1 27 HELIX 26 AC8 VAL R 350 TYR R 370 1 21 HELIX 27 AC9 ASN R 374 GLY R 388 1 15 HELIX 28 AD1 PRO R 389 ARG R 394 1 6 HELIX 29 AD2 SER S 53 GLY S 56 5 4 HELIX 30 AD3 ARG S 87 THR S 91 5 5 SHEET 1 AA1 6 VAL A 185 PHE A 191 0 SHEET 2 AA1 6 LEU A 194 ASP A 200 -1 O MET A 198 N THR A 187 SHEET 3 AA1 6 VAL A 34 GLY A 40 1 N VAL A 34 O HIS A 195 SHEET 4 AA1 6 ALA A 220 ALA A 226 1 O CYS A 224 N LEU A 39 SHEET 5 AA1 6 SER A 263 ASN A 269 1 O ILE A 265 N PHE A 223 SHEET 6 AA1 6 ILE A 319 HIS A 322 1 O TYR A 320 N LEU A 266 SHEET 1 AA2 4 THR B 47 ARG B 52 0 SHEET 2 AA2 4 PHE B 335 TRP B 339 -1 O LEU B 336 N LEU B 51 SHEET 3 AA2 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 AA2 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328 SHEET 1 AA3 4 ILE B 58 TRP B 63 0 SHEET 2 AA3 4 LEU B 69 SER B 74 -1 O ALA B 73 N ALA B 60 SHEET 3 AA3 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 AA3 4 ASN B 88 PRO B 94 -1 O VAL B 90 N ILE B 81 SHEET 1 AA4 4 VAL B 100 TYR B 105 0 SHEET 2 AA4 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101 SHEET 3 AA4 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA4 4 ARG B 134 LEU B 139 -1 O SER B 136 N ILE B 123 SHEET 1 AA5 4 LEU B 146 PHE B 151 0 SHEET 2 AA5 4 GLN B 156 SER B 161 -1 O VAL B 158 N ARG B 150 SHEET 3 AA5 4 CYS B 166 ASP B 170 -1 O TRP B 169 N ILE B 157 SHEET 4 AA5 4 GLN B 175 PHE B 180 -1 O PHE B 180 N CYS B 166 SHEET 1 AA6 4 VAL B 187 LEU B 192 0 SHEET 2 AA6 4 LEU B 198 ALA B 203 -1 O GLY B 202 N SER B 189 SHEET 3 AA6 4 ALA B 208 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA6 4 CYS B 218 PHE B 222 -1 O ARG B 219 N LEU B 210 SHEET 1 AA7 4 ILE B 229 PHE B 234 0 SHEET 2 AA7 4 ALA B 240 SER B 245 -1 O GLY B 244 N ALA B 231 SHEET 3 AA7 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA7 4 GLN B 259 THR B 263 -1 O MET B 262 N LEU B 252 SHEET 1 AA8 4 ILE B 273 PHE B 278 0 SHEET 2 AA8 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277 SHEET 3 AA8 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AA8 4 ARG B 304 LEU B 308 -1 O LEU B 308 N CYS B 294 SHEET 1 AA9 2 TYR R 159 LEU R 161 0 SHEET 2 AA9 2 CYS R 168 PHE R 170 -1 O SER R 169 N ILE R 160 SHEET 1 AB1 4 GLN S 3 SER S 7 0 SHEET 2 AB1 4 SER S 17 SER S 25 -1 O SER S 21 N SER S 7 SHEET 3 AB1 4 THR S 78 THR S 84 -1 O LEU S 81 N LEU S 20 SHEET 4 AB1 4 PHE S 68 ASP S 73 -1 N ASP S 73 O THR S 78 SHEET 1 AB2 6 GLY S 10 VAL S 12 0 SHEET 2 AB2 6 THR S 115 VAL S 119 1 O THR S 118 N GLY S 10 SHEET 3 AB2 6 ALA S 92 SER S 99 -1 N ALA S 92 O LEU S 117 SHEET 4 AB2 6 GLY S 33 GLN S 39 -1 N VAL S 37 O TYR S 95 SHEET 5 AB2 6 LEU S 45 ILE S 51 -1 O GLU S 46 N ARG S 38 SHEET 6 AB2 6 ILE S 58 TYR S 60 -1 O TYR S 59 N TYR S 50 SHEET 1 AB3 4 MET S 140 GLN S 142 0 SHEET 2 AB3 4 VAL S 155 SER S 161 -1 O ARG S 160 N THR S 141 SHEET 3 AB3 4 ALA S 211 ILE S 216 -1 O ILE S 216 N VAL S 155 SHEET 4 AB3 4 PHE S 203 GLY S 207 -1 N SER S 206 O THR S 213 SHEET 1 AB4 6 SER S 146 PRO S 148 0 SHEET 2 AB4 6 THR S 243 GLU S 246 1 O LYS S 244 N VAL S 147 SHEET 3 AB4 6 GLY S 225 GLN S 231 -1 N GLY S 225 O LEU S 245 SHEET 4 AB4 6 LEU S 174 GLN S 179 -1 N PHE S 177 O TYR S 228 SHEET 5 AB4 6 GLN S 186 TYR S 190 -1 O LEU S 188 N TRP S 176 SHEET 6 AB4 6 ASN S 194 LEU S 195 -1 O ASN S 194 N TYR S 190 SSBOND 1 CYS R 11 CYS R 166 1555 1555 2.03 SSBOND 2 CYS R 93 CYS R 168 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000