data_8J1T # _entry.id 8J1T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8J1T pdb_00008j1t 10.2210/pdb8j1t/pdb WWPDB D_1300036652 ? ? EMDB EMD-35932 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab' _pdbx_database_related.db_id EMD-35932 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8J1T _pdbx_database_status.recvd_initial_deposition_date 2023-04-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xiang, Y.' 1 ? 'Li, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 8042 _citation.page_last 8042 _citation.title 'A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-43798-8 _citation.pdbx_database_id_PubMed 38052844 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tai, W.' 1 0000-0002-9864-8993 primary 'Yang, K.' 2 ? primary 'Liu, Y.' 3 0000-0002-5531-6972 primary 'Li, R.' 4 ? primary 'Feng, S.' 5 ? primary 'Chai, B.' 6 ? primary 'Zhuang, X.' 7 ? primary 'Qi, S.' 8 ? primary 'Shi, H.' 9 ? primary 'Liu, Z.' 10 ? primary 'Lei, J.' 11 ? primary 'Ma, E.' 12 ? primary 'Wang, W.' 13 ? primary 'Tian, C.' 14 ? primary 'Le, T.' 15 ? primary 'Wang, J.' 16 ? primary 'Chen, Y.' 17 0000-0002-5185-4781 primary 'Tian, M.' 18 0000-0003-0360-3635 primary 'Xiang, Y.' 19 0000-0003-0230-9522 primary 'Yu, G.' 20 0000-0003-1157-4184 primary 'Cheng, G.' 21 0000-0001-7447-5488 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8J1T _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8J1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '8-9D heavy chain' 12439.867 1 ? ? ? ? 2 polymer man '8-9D light chain' 11729.067 1 ? ? ? ? 3 polymer man 'Spike protein' 21905.697 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMNWVRQAPGKGLEWVSVFYPGGSTFYADSVRGRFTISRDNSKNTLYLQ MNSLRAEDTAVYYCARDHSGHALDIWGQGTMVTVS ; ;VQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMNWVRQAPGKGLEWVSVFYPGGSTFYADSVRGRFTISRDNSKNTLYLQ MNSLRAEDTAVYYCARDHSGHALDIWGQGTMVTVS ; H ? 2 'polypeptide(L)' no no ;DIQMTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP EDFATYYCQHLNSYPSMYTFGQGTKVDI ; ;DIQMTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP EDFATYYCQHLNSYPSMYTFGQGTKVDI ; K ? 3 'polypeptide(L)' no no ;NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQ SYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; ;NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQ SYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 LEU n 1 4 VAL n 1 5 GLU n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 GLY n 1 10 LEU n 1 11 VAL n 1 12 GLN n 1 13 PRO n 1 14 GLY n 1 15 GLY n 1 16 SER n 1 17 LEU n 1 18 ARG n 1 19 LEU n 1 20 SER n 1 21 CYS n 1 22 ALA n 1 23 ALA n 1 24 SER n 1 25 GLY n 1 26 LEU n 1 27 THR n 1 28 VAL n 1 29 SER n 1 30 SER n 1 31 ASN n 1 32 TYR n 1 33 MET n 1 34 ASN n 1 35 TRP n 1 36 VAL n 1 37 ARG n 1 38 GLN n 1 39 ALA n 1 40 PRO n 1 41 GLY n 1 42 LYS n 1 43 GLY n 1 44 LEU n 1 45 GLU n 1 46 TRP n 1 47 VAL n 1 48 SER n 1 49 VAL n 1 50 PHE n 1 51 TYR n 1 52 PRO n 1 53 GLY n 1 54 GLY n 1 55 SER n 1 56 THR n 1 57 PHE n 1 58 TYR n 1 59 ALA n 1 60 ASP n 1 61 SER n 1 62 VAL n 1 63 ARG n 1 64 GLY n 1 65 ARG n 1 66 PHE n 1 67 THR n 1 68 ILE n 1 69 SER n 1 70 ARG n 1 71 ASP n 1 72 ASN n 1 73 SER n 1 74 LYS n 1 75 ASN n 1 76 THR n 1 77 LEU n 1 78 TYR n 1 79 LEU n 1 80 GLN n 1 81 MET n 1 82 ASN n 1 83 SER n 1 84 LEU n 1 85 ARG n 1 86 ALA n 1 87 GLU n 1 88 ASP n 1 89 THR n 1 90 ALA n 1 91 VAL n 1 92 TYR n 1 93 TYR n 1 94 CYS n 1 95 ALA n 1 96 ARG n 1 97 ASP n 1 98 HIS n 1 99 SER n 1 100 GLY n 1 101 HIS n 1 102 ALA n 1 103 LEU n 1 104 ASP n 1 105 ILE n 1 106 TRP n 1 107 GLY n 1 108 GLN n 1 109 GLY n 1 110 THR n 1 111 MET n 1 112 VAL n 1 113 THR n 1 114 VAL n 1 115 SER n 2 1 ASP n 2 2 ILE n 2 3 GLN n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 PHE n 2 11 LEU n 2 12 SER n 2 13 ALA n 2 14 SER n 2 15 VAL n 2 16 GLY n 2 17 ASP n 2 18 ARG n 2 19 VAL n 2 20 THR n 2 21 ILE n 2 22 THR n 2 23 CYS n 2 24 ARG n 2 25 ALA n 2 26 SER n 2 27 GLN n 2 28 GLY n 2 29 ILE n 2 30 SER n 2 31 SER n 2 32 TYR n 2 33 LEU n 2 34 ALA n 2 35 TRP n 2 36 TYR n 2 37 GLN n 2 38 GLN n 2 39 LYS n 2 40 PRO n 2 41 GLY n 2 42 LYS n 2 43 ALA n 2 44 PRO n 2 45 LYS n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 TYR n 2 50 ALA n 2 51 ALA n 2 52 SER n 2 53 THR n 2 54 LEU n 2 55 GLN n 2 56 SER n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 SER n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 GLY n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 THR n 2 70 GLU n 2 71 PHE n 2 72 THR n 2 73 LEU n 2 74 THR n 2 75 ILE n 2 76 SER n 2 77 SER n 2 78 LEU n 2 79 GLN n 2 80 PRO n 2 81 GLU n 2 82 ASP n 2 83 PHE n 2 84 ALA n 2 85 THR n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 GLN n 2 90 HIS n 2 91 LEU n 2 92 ASN n 2 93 SER n 2 94 TYR n 2 95 PRO n 2 96 SER n 2 97 MET n 2 98 TYR n 2 99 THR n 2 100 PHE n 2 101 GLY n 2 102 GLN n 2 103 GLY n 2 104 THR n 2 105 LYS n 2 106 VAL n 2 107 ASP n 2 108 ILE n 3 1 ASN n 3 2 LEU n 3 3 CYS n 3 4 PRO n 3 5 PHE n 3 6 ASP n 3 7 GLU n 3 8 VAL n 3 9 PHE n 3 10 ASN n 3 11 ALA n 3 12 THR n 3 13 ARG n 3 14 PHE n 3 15 ALA n 3 16 SER n 3 17 VAL n 3 18 TYR n 3 19 ALA n 3 20 TRP n 3 21 ASN n 3 22 ARG n 3 23 LYS n 3 24 ARG n 3 25 ILE n 3 26 SER n 3 27 ASN n 3 28 CYS n 3 29 VAL n 3 30 ALA n 3 31 ASP n 3 32 TYR n 3 33 SER n 3 34 VAL n 3 35 LEU n 3 36 TYR n 3 37 ASN n 3 38 PHE n 3 39 ALA n 3 40 PRO n 3 41 PHE n 3 42 PHE n 3 43 ALA n 3 44 PHE n 3 45 LYS n 3 46 CYS n 3 47 TYR n 3 48 GLY n 3 49 VAL n 3 50 SER n 3 51 PRO n 3 52 THR n 3 53 LYS n 3 54 LEU n 3 55 ASN n 3 56 ASP n 3 57 LEU n 3 58 CYS n 3 59 PHE n 3 60 THR n 3 61 ASN n 3 62 VAL n 3 63 TYR n 3 64 ALA n 3 65 ASP n 3 66 SER n 3 67 PHE n 3 68 VAL n 3 69 ILE n 3 70 ARG n 3 71 GLY n 3 72 ASN n 3 73 GLU n 3 74 VAL n 3 75 SER n 3 76 GLN n 3 77 ILE n 3 78 ALA n 3 79 PRO n 3 80 GLY n 3 81 GLN n 3 82 THR n 3 83 GLY n 3 84 ASN n 3 85 ILE n 3 86 ALA n 3 87 ASP n 3 88 TYR n 3 89 ASN n 3 90 TYR n 3 91 LYS n 3 92 LEU n 3 93 PRO n 3 94 ASP n 3 95 ASP n 3 96 PHE n 3 97 THR n 3 98 GLY n 3 99 CYS n 3 100 VAL n 3 101 ILE n 3 102 ALA n 3 103 TRP n 3 104 ASN n 3 105 SER n 3 106 ASN n 3 107 LYS n 3 108 LEU n 3 109 ASP n 3 110 SER n 3 111 LYS n 3 112 VAL n 3 113 GLY n 3 114 GLY n 3 115 ASN n 3 116 TYR n 3 117 ASN n 3 118 TYR n 3 119 ARG n 3 120 TYR n 3 121 ARG n 3 122 LEU n 3 123 PHE n 3 124 ARG n 3 125 LYS n 3 126 SER n 3 127 ASN n 3 128 LEU n 3 129 LYS n 3 130 PRO n 3 131 PHE n 3 132 GLU n 3 133 ARG n 3 134 ASP n 3 135 ILE n 3 136 SER n 3 137 THR n 3 138 GLU n 3 139 ILE n 3 140 TYR n 3 141 GLN n 3 142 ALA n 3 143 GLY n 3 144 ASN n 3 145 LYS n 3 146 PRO n 3 147 CYS n 3 148 ASN n 3 149 GLY n 3 150 VAL n 3 151 ALA n 3 152 GLY n 3 153 VAL n 3 154 ASN n 3 155 CYS n 3 156 TYR n 3 157 PHE n 3 158 PRO n 3 159 LEU n 3 160 GLN n 3 161 SER n 3 162 TYR n 3 163 GLY n 3 164 PHE n 3 165 ARG n 3 166 PRO n 3 167 THR n 3 168 TYR n 3 169 GLY n 3 170 VAL n 3 171 GLY n 3 172 HIS n 3 173 GLN n 3 174 PRO n 3 175 TYR n 3 176 ARG n 3 177 VAL n 3 178 VAL n 3 179 VAL n 3 180 LEU n 3 181 SER n 3 182 PHE n 3 183 GLU n 3 184 LEU n 3 185 LEU n 3 186 HIS n 3 187 ALA n 3 188 PRO n 3 189 ALA n 3 190 THR n 3 191 VAL n 3 192 CYS n 3 193 GLY n 3 194 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 115 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 108 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 194 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8J1T 8J1T ? 1 ? 1 2 PDB 8J1T 8J1T ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 334 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8J1T H 1 ? 115 ? 8J1T 3 ? 117 ? 3 117 2 2 8J1T K 1 ? 108 ? 8J1T 1 ? 108 ? 1 108 3 3 8J1T F 1 ? 194 ? P0DTC2 334 ? 527 ? 334 527 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 8J1T ASP F 6 ? UNP P0DTC2 GLY 339 variant 339 1 3 8J1T PHE F 38 ? UNP P0DTC2 SER 371 variant 371 2 3 8J1T PRO F 40 ? UNP P0DTC2 SER 373 variant 373 3 3 8J1T PHE F 42 ? UNP P0DTC2 SER 375 variant 375 4 3 8J1T ALA F 43 ? UNP P0DTC2 THR 376 conflict 376 5 3 8J1T ASN F 72 ? UNP P0DTC2 ASP 405 conflict 405 6 3 8J1T SER F 75 ? UNP P0DTC2 ARG 408 conflict 408 7 3 8J1T ASN F 84 ? UNP P0DTC2 LYS 417 variant 417 8 3 8J1T LYS F 107 ? UNP P0DTC2 ASN 440 variant 440 9 3 8J1T ARG F 119 ? UNP P0DTC2 LEU 452 conflict 452 10 3 8J1T ASN F 144 ? UNP P0DTC2 SER 477 variant 477 11 3 8J1T LYS F 145 ? UNP P0DTC2 THR 478 variant 478 12 3 8J1T ALA F 151 ? UNP P0DTC2 GLU 484 variant 484 13 3 8J1T VAL F 153 ? UNP P0DTC2 PHE 486 conflict 486 14 3 8J1T ARG F 165 ? UNP P0DTC2 GLN 498 variant 498 15 3 8J1T TYR F 168 ? UNP P0DTC2 ASN 501 variant 501 16 3 8J1T HIS F 172 ? UNP P0DTC2 TYR 505 variant 505 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8J1T _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8J1T _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3305 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.554 ? 4489 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.782 ? 462 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 481 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 581 ? f_plane_restr ? ? # _struct.entry_id 8J1T _struct.title 'Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8J1T _struct_keywords.text 'VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 27 ? ASN A 31 ? THR H 29 ASN H 33 5 ? 5 HELX_P HELX_P2 AA2 ALA A 59 ? ARG A 63 ? ALA H 61 ARG H 65 5 ? 5 HELX_P HELX_P3 AA3 PRO C 4 ? ASN C 10 ? PRO F 337 ASN F 343 1 ? 7 HELX_P HELX_P4 AA4 SER C 33 ? ALA C 39 ? SER F 366 ALA F 372 1 ? 7 HELX_P HELX_P5 AA5 PRO C 51 ? ASN C 55 ? PRO F 384 ASN F 388 5 ? 5 HELX_P HELX_P6 AA6 ASN C 72 ? ILE C 77 ? ASN F 405 ILE F 410 5 ? 6 HELX_P HELX_P7 AA7 GLY C 83 ? ASN C 89 ? GLY F 416 ASN F 422 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 94 SG ? ? H CYS 23 H CYS 96 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 88 SG ? ? K CYS 23 K CYS 88 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 28 SG ? ? F CYS 336 F CYS 361 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 99 SG ? ? F CYS 379 F CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? C CYS 58 SG ? ? ? 1_555 C CYS 192 SG ? ? F CYS 391 F CYS 525 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf6 disulf ? ? C CYS 147 SG ? ? ? 1_555 C CYS 155 SG ? ? F CYS 480 F CYS 488 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 5 ? AA6 ? 2 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 2 ? SER A 6 ? GLN H 4 SER H 8 AA1 2 LEU A 17 ? SER A 24 ? LEU H 19 SER H 26 AA1 3 THR A 76 ? MET A 81 ? THR H 78 MET H 83 AA1 4 PHE A 66 ? ASP A 71 ? PHE H 68 ASP H 73 AA2 1 GLY A 9 ? VAL A 11 ? GLY H 11 VAL H 13 AA2 2 THR A 110 ? VAL A 114 ? THR H 112 VAL H 116 AA2 3 ALA A 90 ? ASP A 97 ? ALA H 92 ASP H 99 AA2 4 TYR A 32 ? GLN A 38 ? TYR H 34 GLN H 40 AA2 5 LEU A 44 ? PHE A 50 ? LEU H 46 PHE H 52 AA3 1 MET B 4 ? GLN B 6 ? MET K 4 GLN K 6 AA3 2 VAL B 19 ? ALA B 25 ? VAL K 19 ALA K 25 AA3 3 GLU B 70 ? ILE B 75 ? GLU K 70 ILE K 75 AA3 4 PHE B 62 ? SER B 63 ? PHE K 62 SER K 63 AA4 1 LYS B 45 ? ILE B 48 ? LYS K 45 ILE K 48 AA4 2 TRP B 35 ? GLN B 37 ? TRP K 35 GLN K 37 AA4 3 THR B 85 ? TYR B 87 ? THR K 85 TYR K 87 AA4 4 THR B 104 ? LYS B 105 ? THR K 104 LYS K 105 AA5 1 ASN C 21 ? ARG C 22 ? ASN F 354 ARG F 355 AA5 2 ASP C 65 ? ARG C 70 ? ASP F 398 ARG F 403 AA5 3 PRO C 174 ? SER C 181 ? PRO F 507 SER F 514 AA5 4 GLY C 98 ? ASN C 104 ? GLY F 431 ASN F 437 AA5 5 ALA C 43 ? TYR C 47 ? ALA F 376 TYR F 380 AA6 1 CYS C 58 ? PHE C 59 ? CYS F 391 PHE F 392 AA6 2 VAL C 191 ? CYS C 192 ? VAL F 524 CYS F 525 AA7 1 ARG C 119 ? ARG C 121 ? ARG F 452 ARG F 454 AA7 2 LEU C 159 ? SER C 161 ? LEU F 492 SER F 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL H 6 O ALA A 22 ? O ALA H 24 AA1 2 3 N CYS A 21 ? N CYS H 23 O LEU A 77 ? O LEU H 79 AA1 3 4 O GLN A 80 ? O GLN H 82 N THR A 67 ? N THR H 69 AA2 1 2 N GLY A 9 ? N GLY H 11 O THR A 113 ? O THR H 115 AA2 2 3 O THR A 110 ? O THR H 112 N TYR A 92 ? N TYR H 94 AA2 3 4 O TYR A 93 ? O TYR H 95 N VAL A 36 ? N VAL H 38 AA2 4 5 N ARG A 37 ? N ARG H 39 O GLU A 45 ? O GLU H 47 AA3 1 2 N THR B 5 ? N THR K 5 O ARG B 24 ? O ARG K 24 AA3 2 3 N ILE B 21 ? N ILE K 21 O LEU B 73 ? O LEU K 73 AA3 3 4 O THR B 74 ? O THR K 74 N SER B 63 ? N SER K 63 AA4 1 2 O ILE B 48 ? O ILE K 48 N TRP B 35 ? N TRP K 35 AA4 2 3 N TYR B 36 ? N TYR K 36 O TYR B 87 ? O TYR K 87 AA4 3 4 N TYR B 86 ? N TYR K 86 O THR B 104 ? O THR K 104 AA5 1 2 N ASN C 21 ? N ASN F 354 O SER C 66 ? O SER F 399 AA5 2 3 N ASP C 65 ? N ASP F 398 O VAL C 179 ? O VAL F 512 AA5 3 4 O VAL C 178 ? O VAL F 511 N ILE C 101 ? N ILE F 434 AA5 4 5 O VAL C 100 ? O VAL F 433 N LYS C 45 ? N LYS F 378 AA6 1 2 N PHE C 59 ? N PHE F 392 O VAL C 191 ? O VAL F 524 AA7 1 2 N TYR C 120 ? N TYR F 453 O GLN C 160 ? O GLN F 493 # _atom_sites.entry_id 8J1T _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 3 3 VAL VAL H . n A 1 2 GLN 2 4 4 GLN GLN H . n A 1 3 LEU 3 5 5 LEU LEU H . n A 1 4 VAL 4 6 6 VAL VAL H . n A 1 5 GLU 5 7 7 GLU GLU H . n A 1 6 SER 6 8 8 SER SER H . n A 1 7 GLY 7 9 9 GLY GLY H . n A 1 8 GLY 8 10 10 GLY GLY H . n A 1 9 GLY 9 11 11 GLY GLY H . n A 1 10 LEU 10 12 12 LEU LEU H . n A 1 11 VAL 11 13 13 VAL VAL H . n A 1 12 GLN 12 14 14 GLN GLN H . n A 1 13 PRO 13 15 15 PRO PRO H . n A 1 14 GLY 14 16 16 GLY GLY H . n A 1 15 GLY 15 17 17 GLY GLY H . n A 1 16 SER 16 18 18 SER SER H . n A 1 17 LEU 17 19 19 LEU LEU H . n A 1 18 ARG 18 20 20 ARG ARG H . n A 1 19 LEU 19 21 21 LEU LEU H . n A 1 20 SER 20 22 22 SER SER H . n A 1 21 CYS 21 23 23 CYS CYS H . n A 1 22 ALA 22 24 24 ALA ALA H . n A 1 23 ALA 23 25 25 ALA ALA H . n A 1 24 SER 24 26 26 SER SER H . n A 1 25 GLY 25 27 27 GLY GLY H . n A 1 26 LEU 26 28 28 LEU LEU H . n A 1 27 THR 27 29 29 THR THR H . n A 1 28 VAL 28 30 30 VAL VAL H . n A 1 29 SER 29 31 31 SER SER H . n A 1 30 SER 30 32 32 SER SER H . n A 1 31 ASN 31 33 33 ASN ASN H . n A 1 32 TYR 32 34 34 TYR TYR H . n A 1 33 MET 33 35 35 MET MET H . n A 1 34 ASN 34 36 36 ASN ASN H . n A 1 35 TRP 35 37 37 TRP TRP H . n A 1 36 VAL 36 38 38 VAL VAL H . n A 1 37 ARG 37 39 39 ARG ARG H . n A 1 38 GLN 38 40 40 GLN GLN H . n A 1 39 ALA 39 41 41 ALA ALA H . n A 1 40 PRO 40 42 42 PRO PRO H . n A 1 41 GLY 41 43 43 GLY GLY H . n A 1 42 LYS 42 44 44 LYS LYS H . n A 1 43 GLY 43 45 45 GLY GLY H . n A 1 44 LEU 44 46 46 LEU LEU H . n A 1 45 GLU 45 47 47 GLU GLU H . n A 1 46 TRP 46 48 48 TRP TRP H . n A 1 47 VAL 47 49 49 VAL VAL H . n A 1 48 SER 48 50 50 SER SER H . n A 1 49 VAL 49 51 51 VAL VAL H . n A 1 50 PHE 50 52 52 PHE PHE H . n A 1 51 TYR 51 53 53 TYR TYR H . n A 1 52 PRO 52 54 54 PRO PRO H . n A 1 53 GLY 53 55 55 GLY GLY H . n A 1 54 GLY 54 56 56 GLY GLY H . n A 1 55 SER 55 57 57 SER SER H . n A 1 56 THR 56 58 58 THR THR H . n A 1 57 PHE 57 59 59 PHE PHE H . n A 1 58 TYR 58 60 60 TYR TYR H . n A 1 59 ALA 59 61 61 ALA ALA H . n A 1 60 ASP 60 62 62 ASP ASP H . n A 1 61 SER 61 63 63 SER SER H . n A 1 62 VAL 62 64 64 VAL VAL H . n A 1 63 ARG 63 65 65 ARG ARG H . n A 1 64 GLY 64 66 66 GLY GLY H . n A 1 65 ARG 65 67 67 ARG ARG H . n A 1 66 PHE 66 68 68 PHE PHE H . n A 1 67 THR 67 69 69 THR THR H . n A 1 68 ILE 68 70 70 ILE ILE H . n A 1 69 SER 69 71 71 SER SER H . n A 1 70 ARG 70 72 72 ARG ARG H . n A 1 71 ASP 71 73 73 ASP ASP H . n A 1 72 ASN 72 74 74 ASN ASN H . n A 1 73 SER 73 75 75 SER SER H . n A 1 74 LYS 74 76 76 LYS LYS H . n A 1 75 ASN 75 77 77 ASN ASN H . n A 1 76 THR 76 78 78 THR THR H . n A 1 77 LEU 77 79 79 LEU LEU H . n A 1 78 TYR 78 80 80 TYR TYR H . n A 1 79 LEU 79 81 81 LEU LEU H . n A 1 80 GLN 80 82 82 GLN GLN H . n A 1 81 MET 81 83 83 MET MET H . n A 1 82 ASN 82 84 84 ASN ASN H . n A 1 83 SER 83 85 85 SER SER H . n A 1 84 LEU 84 86 86 LEU LEU H . n A 1 85 ARG 85 87 87 ARG ARG H . n A 1 86 ALA 86 88 88 ALA ALA H . n A 1 87 GLU 87 89 89 GLU GLU H . n A 1 88 ASP 88 90 90 ASP ASP H . n A 1 89 THR 89 91 91 THR THR H . n A 1 90 ALA 90 92 92 ALA ALA H . n A 1 91 VAL 91 93 93 VAL VAL H . n A 1 92 TYR 92 94 94 TYR TYR H . n A 1 93 TYR 93 95 95 TYR TYR H . n A 1 94 CYS 94 96 96 CYS CYS H . n A 1 95 ALA 95 97 97 ALA ALA H . n A 1 96 ARG 96 98 98 ARG ARG H . n A 1 97 ASP 97 99 99 ASP ASP H . n A 1 98 HIS 98 100 100 HIS HIS H . n A 1 99 SER 99 101 101 SER SER H . n A 1 100 GLY 100 102 102 GLY GLY H . n A 1 101 HIS 101 103 103 HIS HIS H . n A 1 102 ALA 102 104 104 ALA ALA H . n A 1 103 LEU 103 105 105 LEU LEU H . n A 1 104 ASP 104 106 106 ASP ASP H . n A 1 105 ILE 105 107 107 ILE ILE H . n A 1 106 TRP 106 108 108 TRP TRP H . n A 1 107 GLY 107 109 109 GLY GLY H . n A 1 108 GLN 108 110 110 GLN GLN H . n A 1 109 GLY 109 111 111 GLY GLY H . n A 1 110 THR 110 112 112 THR THR H . n A 1 111 MET 111 113 113 MET MET H . n A 1 112 VAL 112 114 114 VAL VAL H . n A 1 113 THR 113 115 115 THR THR H . n A 1 114 VAL 114 116 116 VAL VAL H . n A 1 115 SER 115 117 117 SER SER H . n B 2 1 ASP 1 1 1 ASP ASP K . n B 2 2 ILE 2 2 2 ILE ILE K . n B 2 3 GLN 3 3 3 GLN GLN K . n B 2 4 MET 4 4 4 MET MET K . n B 2 5 THR 5 5 5 THR THR K . n B 2 6 GLN 6 6 6 GLN GLN K . n B 2 7 SER 7 7 7 SER SER K . n B 2 8 PRO 8 8 8 PRO PRO K . n B 2 9 SER 9 9 9 SER SER K . n B 2 10 PHE 10 10 10 PHE PHE K . n B 2 11 LEU 11 11 11 LEU LEU K . n B 2 12 SER 12 12 12 SER SER K . n B 2 13 ALA 13 13 13 ALA ALA K . n B 2 14 SER 14 14 14 SER SER K . n B 2 15 VAL 15 15 15 VAL VAL K . n B 2 16 GLY 16 16 16 GLY GLY K . n B 2 17 ASP 17 17 17 ASP ASP K . n B 2 18 ARG 18 18 18 ARG ARG K . n B 2 19 VAL 19 19 19 VAL VAL K . n B 2 20 THR 20 20 20 THR THR K . n B 2 21 ILE 21 21 21 ILE ILE K . n B 2 22 THR 22 22 22 THR THR K . n B 2 23 CYS 23 23 23 CYS CYS K . n B 2 24 ARG 24 24 24 ARG ARG K . n B 2 25 ALA 25 25 25 ALA ALA K . n B 2 26 SER 26 26 26 SER SER K . n B 2 27 GLN 27 27 27 GLN GLN K . n B 2 28 GLY 28 28 28 GLY GLY K . n B 2 29 ILE 29 29 29 ILE ILE K . n B 2 30 SER 30 30 30 SER SER K . n B 2 31 SER 31 31 31 SER SER K . n B 2 32 TYR 32 32 32 TYR TYR K . n B 2 33 LEU 33 33 33 LEU LEU K . n B 2 34 ALA 34 34 34 ALA ALA K . n B 2 35 TRP 35 35 35 TRP TRP K . n B 2 36 TYR 36 36 36 TYR TYR K . n B 2 37 GLN 37 37 37 GLN GLN K . n B 2 38 GLN 38 38 38 GLN GLN K . n B 2 39 LYS 39 39 39 LYS LYS K . n B 2 40 PRO 40 40 40 PRO PRO K . n B 2 41 GLY 41 41 41 GLY GLY K . n B 2 42 LYS 42 42 42 LYS LYS K . n B 2 43 ALA 43 43 43 ALA ALA K . n B 2 44 PRO 44 44 44 PRO PRO K . n B 2 45 LYS 45 45 45 LYS LYS K . n B 2 46 LEU 46 46 46 LEU LEU K . n B 2 47 LEU 47 47 47 LEU LEU K . n B 2 48 ILE 48 48 48 ILE ILE K . n B 2 49 TYR 49 49 49 TYR TYR K . n B 2 50 ALA 50 50 50 ALA ALA K . n B 2 51 ALA 51 51 51 ALA ALA K . n B 2 52 SER 52 52 52 SER SER K . n B 2 53 THR 53 53 53 THR THR K . n B 2 54 LEU 54 54 54 LEU LEU K . n B 2 55 GLN 55 55 55 GLN GLN K . n B 2 56 SER 56 56 56 SER SER K . n B 2 57 GLY 57 57 57 GLY GLY K . n B 2 58 VAL 58 58 58 VAL VAL K . n B 2 59 PRO 59 59 59 PRO PRO K . n B 2 60 SER 60 60 60 SER SER K . n B 2 61 ARG 61 61 61 ARG ARG K . n B 2 62 PHE 62 62 62 PHE PHE K . n B 2 63 SER 63 63 63 SER SER K . n B 2 64 GLY 64 64 64 GLY GLY K . n B 2 65 SER 65 65 65 SER SER K . n B 2 66 GLY 66 66 66 GLY GLY K . n B 2 67 SER 67 67 67 SER SER K . n B 2 68 GLY 68 68 68 GLY GLY K . n B 2 69 THR 69 69 69 THR THR K . n B 2 70 GLU 70 70 70 GLU GLU K . n B 2 71 PHE 71 71 71 PHE PHE K . n B 2 72 THR 72 72 72 THR THR K . n B 2 73 LEU 73 73 73 LEU LEU K . n B 2 74 THR 74 74 74 THR THR K . n B 2 75 ILE 75 75 75 ILE ILE K . n B 2 76 SER 76 76 76 SER SER K . n B 2 77 SER 77 77 77 SER SER K . n B 2 78 LEU 78 78 78 LEU LEU K . n B 2 79 GLN 79 79 79 GLN GLN K . n B 2 80 PRO 80 80 80 PRO PRO K . n B 2 81 GLU 81 81 81 GLU GLU K . n B 2 82 ASP 82 82 82 ASP ASP K . n B 2 83 PHE 83 83 83 PHE PHE K . n B 2 84 ALA 84 84 84 ALA ALA K . n B 2 85 THR 85 85 85 THR THR K . n B 2 86 TYR 86 86 86 TYR TYR K . n B 2 87 TYR 87 87 87 TYR TYR K . n B 2 88 CYS 88 88 88 CYS CYS K . n B 2 89 GLN 89 89 89 GLN GLN K . n B 2 90 HIS 90 90 90 HIS HIS K . n B 2 91 LEU 91 91 91 LEU LEU K . n B 2 92 ASN 92 92 92 ASN ASN K . n B 2 93 SER 93 93 93 SER SER K . n B 2 94 TYR 94 94 94 TYR TYR K . n B 2 95 PRO 95 95 95 PRO PRO K . n B 2 96 SER 96 96 96 SER SER K . n B 2 97 MET 97 97 97 MET MET K . n B 2 98 TYR 98 98 98 TYR TYR K . n B 2 99 THR 99 99 99 THR THR K . n B 2 100 PHE 100 100 100 PHE PHE K . n B 2 101 GLY 101 101 101 GLY GLY K . n B 2 102 GLN 102 102 102 GLN GLN K . n B 2 103 GLY 103 103 103 GLY GLY K . n B 2 104 THR 104 104 104 THR THR K . n B 2 105 LYS 105 105 105 LYS LYS K . n B 2 106 VAL 106 106 106 VAL VAL K . n B 2 107 ASP 107 107 107 ASP ASP K . n B 2 108 ILE 108 108 108 ILE ILE K . n C 3 1 ASN 1 334 334 ASN ASN F . n C 3 2 LEU 2 335 335 LEU LEU F . n C 3 3 CYS 3 336 336 CYS CYS F . n C 3 4 PRO 4 337 337 PRO PRO F . n C 3 5 PHE 5 338 338 PHE PHE F . n C 3 6 ASP 6 339 339 ASP ASP F . n C 3 7 GLU 7 340 340 GLU GLU F . n C 3 8 VAL 8 341 341 VAL VAL F . n C 3 9 PHE 9 342 342 PHE PHE F . n C 3 10 ASN 10 343 343 ASN ASN F . n C 3 11 ALA 11 344 344 ALA ALA F . n C 3 12 THR 12 345 345 THR THR F . n C 3 13 ARG 13 346 346 ARG ARG F . n C 3 14 PHE 14 347 347 PHE PHE F . n C 3 15 ALA 15 348 348 ALA ALA F . n C 3 16 SER 16 349 349 SER SER F . n C 3 17 VAL 17 350 350 VAL VAL F . n C 3 18 TYR 18 351 351 TYR TYR F . n C 3 19 ALA 19 352 352 ALA ALA F . n C 3 20 TRP 20 353 353 TRP TRP F . n C 3 21 ASN 21 354 354 ASN ASN F . n C 3 22 ARG 22 355 355 ARG ARG F . n C 3 23 LYS 23 356 356 LYS LYS F . n C 3 24 ARG 24 357 357 ARG ARG F . n C 3 25 ILE 25 358 358 ILE ILE F . n C 3 26 SER 26 359 359 SER SER F . n C 3 27 ASN 27 360 360 ASN ASN F . n C 3 28 CYS 28 361 361 CYS CYS F . n C 3 29 VAL 29 362 362 VAL VAL F . n C 3 30 ALA 30 363 363 ALA ALA F . n C 3 31 ASP 31 364 364 ASP ASP F . n C 3 32 TYR 32 365 365 TYR TYR F . n C 3 33 SER 33 366 366 SER SER F . n C 3 34 VAL 34 367 367 VAL VAL F . n C 3 35 LEU 35 368 368 LEU LEU F . n C 3 36 TYR 36 369 369 TYR TYR F . n C 3 37 ASN 37 370 370 ASN ASN F . n C 3 38 PHE 38 371 371 PHE PHE F . n C 3 39 ALA 39 372 372 ALA ALA F . n C 3 40 PRO 40 373 373 PRO PRO F . n C 3 41 PHE 41 374 374 PHE PHE F . n C 3 42 PHE 42 375 375 PHE PHE F . n C 3 43 ALA 43 376 376 ALA ALA F . n C 3 44 PHE 44 377 377 PHE PHE F . n C 3 45 LYS 45 378 378 LYS LYS F . n C 3 46 CYS 46 379 379 CYS CYS F . n C 3 47 TYR 47 380 380 TYR TYR F . n C 3 48 GLY 48 381 381 GLY GLY F . n C 3 49 VAL 49 382 382 VAL VAL F . n C 3 50 SER 50 383 383 SER SER F . n C 3 51 PRO 51 384 384 PRO PRO F . n C 3 52 THR 52 385 385 THR THR F . n C 3 53 LYS 53 386 386 LYS LYS F . n C 3 54 LEU 54 387 387 LEU LEU F . n C 3 55 ASN 55 388 388 ASN ASN F . n C 3 56 ASP 56 389 389 ASP ASP F . n C 3 57 LEU 57 390 390 LEU LEU F . n C 3 58 CYS 58 391 391 CYS CYS F . n C 3 59 PHE 59 392 392 PHE PHE F . n C 3 60 THR 60 393 393 THR THR F . n C 3 61 ASN 61 394 394 ASN ASN F . n C 3 62 VAL 62 395 395 VAL VAL F . n C 3 63 TYR 63 396 396 TYR TYR F . n C 3 64 ALA 64 397 397 ALA ALA F . n C 3 65 ASP 65 398 398 ASP ASP F . n C 3 66 SER 66 399 399 SER SER F . n C 3 67 PHE 67 400 400 PHE PHE F . n C 3 68 VAL 68 401 401 VAL VAL F . n C 3 69 ILE 69 402 402 ILE ILE F . n C 3 70 ARG 70 403 403 ARG ARG F . n C 3 71 GLY 71 404 404 GLY GLY F . n C 3 72 ASN 72 405 405 ASN ASN F . n C 3 73 GLU 73 406 406 GLU GLU F . n C 3 74 VAL 74 407 407 VAL VAL F . n C 3 75 SER 75 408 408 SER SER F . n C 3 76 GLN 76 409 409 GLN GLN F . n C 3 77 ILE 77 410 410 ILE ILE F . n C 3 78 ALA 78 411 411 ALA ALA F . n C 3 79 PRO 79 412 412 PRO PRO F . n C 3 80 GLY 80 413 413 GLY GLY F . n C 3 81 GLN 81 414 414 GLN GLN F . n C 3 82 THR 82 415 415 THR THR F . n C 3 83 GLY 83 416 416 GLY GLY F . n C 3 84 ASN 84 417 417 ASN ASN F . n C 3 85 ILE 85 418 418 ILE ILE F . n C 3 86 ALA 86 419 419 ALA ALA F . n C 3 87 ASP 87 420 420 ASP ASP F . n C 3 88 TYR 88 421 421 TYR TYR F . n C 3 89 ASN 89 422 422 ASN ASN F . n C 3 90 TYR 90 423 423 TYR TYR F . n C 3 91 LYS 91 424 424 LYS LYS F . n C 3 92 LEU 92 425 425 LEU LEU F . n C 3 93 PRO 93 426 426 PRO PRO F . n C 3 94 ASP 94 427 427 ASP ASP F . n C 3 95 ASP 95 428 428 ASP ASP F . n C 3 96 PHE 96 429 429 PHE PHE F . n C 3 97 THR 97 430 430 THR THR F . n C 3 98 GLY 98 431 431 GLY GLY F . n C 3 99 CYS 99 432 432 CYS CYS F . n C 3 100 VAL 100 433 433 VAL VAL F . n C 3 101 ILE 101 434 434 ILE ILE F . n C 3 102 ALA 102 435 435 ALA ALA F . n C 3 103 TRP 103 436 436 TRP TRP F . n C 3 104 ASN 104 437 437 ASN ASN F . n C 3 105 SER 105 438 438 SER SER F . n C 3 106 ASN 106 439 439 ASN ASN F . n C 3 107 LYS 107 440 440 LYS LYS F . n C 3 108 LEU 108 441 441 LEU LEU F . n C 3 109 ASP 109 442 442 ASP ASP F . n C 3 110 SER 110 443 443 SER SER F . n C 3 111 LYS 111 444 444 LYS LYS F . n C 3 112 VAL 112 445 445 VAL VAL F . n C 3 113 GLY 113 446 446 GLY GLY F . n C 3 114 GLY 114 447 447 GLY GLY F . n C 3 115 ASN 115 448 448 ASN ASN F . n C 3 116 TYR 116 449 449 TYR TYR F . n C 3 117 ASN 117 450 450 ASN ASN F . n C 3 118 TYR 118 451 451 TYR TYR F . n C 3 119 ARG 119 452 452 ARG ARG F . n C 3 120 TYR 120 453 453 TYR TYR F . n C 3 121 ARG 121 454 454 ARG ARG F . n C 3 122 LEU 122 455 455 LEU LEU F . n C 3 123 PHE 123 456 456 PHE PHE F . n C 3 124 ARG 124 457 457 ARG ARG F . n C 3 125 LYS 125 458 458 LYS LYS F . n C 3 126 SER 126 459 459 SER SER F . n C 3 127 ASN 127 460 460 ASN ASN F . n C 3 128 LEU 128 461 461 LEU LEU F . n C 3 129 LYS 129 462 462 LYS LYS F . n C 3 130 PRO 130 463 463 PRO PRO F . n C 3 131 PHE 131 464 464 PHE PHE F . n C 3 132 GLU 132 465 465 GLU GLU F . n C 3 133 ARG 133 466 466 ARG ARG F . n C 3 134 ASP 134 467 467 ASP ASP F . n C 3 135 ILE 135 468 468 ILE ILE F . n C 3 136 SER 136 469 469 SER SER F . n C 3 137 THR 137 470 470 THR THR F . n C 3 138 GLU 138 471 471 GLU GLU F . n C 3 139 ILE 139 472 472 ILE ILE F . n C 3 140 TYR 140 473 473 TYR TYR F . n C 3 141 GLN 141 474 474 GLN GLN F . n C 3 142 ALA 142 475 475 ALA ALA F . n C 3 143 GLY 143 476 476 GLY GLY F . n C 3 144 ASN 144 477 477 ASN ASN F . n C 3 145 LYS 145 478 478 LYS LYS F . n C 3 146 PRO 146 479 479 PRO PRO F . n C 3 147 CYS 147 480 480 CYS CYS F . n C 3 148 ASN 148 481 481 ASN ASN F . n C 3 149 GLY 149 482 482 GLY GLY F . n C 3 150 VAL 150 483 483 VAL VAL F . n C 3 151 ALA 151 484 484 ALA ALA F . n C 3 152 GLY 152 485 485 GLY GLY F . n C 3 153 VAL 153 486 486 VAL VAL F . n C 3 154 ASN 154 487 487 ASN ASN F . n C 3 155 CYS 155 488 488 CYS CYS F . n C 3 156 TYR 156 489 489 TYR TYR F . n C 3 157 PHE 157 490 490 PHE PHE F . n C 3 158 PRO 158 491 491 PRO PRO F . n C 3 159 LEU 159 492 492 LEU LEU F . n C 3 160 GLN 160 493 493 GLN GLN F . n C 3 161 SER 161 494 494 SER SER F . n C 3 162 TYR 162 495 495 TYR TYR F . n C 3 163 GLY 163 496 496 GLY GLY F . n C 3 164 PHE 164 497 497 PHE PHE F . n C 3 165 ARG 165 498 498 ARG ARG F . n C 3 166 PRO 166 499 499 PRO PRO F . n C 3 167 THR 167 500 500 THR THR F . n C 3 168 TYR 168 501 501 TYR TYR F . n C 3 169 GLY 169 502 502 GLY GLY F . n C 3 170 VAL 170 503 503 VAL VAL F . n C 3 171 GLY 171 504 504 GLY GLY F . n C 3 172 HIS 172 505 505 HIS HIS F . n C 3 173 GLN 173 506 506 GLN GLN F . n C 3 174 PRO 174 507 507 PRO PRO F . n C 3 175 TYR 175 508 508 TYR TYR F . n C 3 176 ARG 176 509 509 ARG ARG F . n C 3 177 VAL 177 510 510 VAL VAL F . n C 3 178 VAL 178 511 511 VAL VAL F . n C 3 179 VAL 179 512 512 VAL VAL F . n C 3 180 LEU 180 513 513 LEU LEU F . n C 3 181 SER 181 514 514 SER SER F . n C 3 182 PHE 182 515 515 PHE PHE F . n C 3 183 GLU 183 516 516 GLU GLU F . n C 3 184 LEU 184 517 ? ? ? F . n C 3 185 LEU 185 518 ? ? ? F . n C 3 186 HIS 186 519 ? ? ? F . n C 3 187 ALA 187 520 ? ? ? F . n C 3 188 PRO 188 521 ? ? ? F . n C 3 189 ALA 189 522 ? ? ? F . n C 3 190 THR 190 523 523 THR THR F . n C 3 191 VAL 191 524 524 VAL VAL F . n C 3 192 CYS 192 525 525 CYS CYS F . n C 3 193 GLY 193 526 526 GLY GLY F . n C 3 194 PRO 194 527 527 PRO PRO F . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email yxiang@mail.tsinghua.edu.cn _pdbx_contact_author.name_first Ye _pdbx_contact_author.name_last Xiang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0230-9522 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-29 2 'Structure model' 1 1 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19_4092: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8J1T _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8J1T _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 8J1T _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1610142 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.7 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 'MULTIPLE SOURCES' COMPLEX 'Severe acute respiratory syndrome coronavirus 2 Omicron BA.5 RBD bound 8-9D Fab' ? ? ? '1, 2, 3' 2 1 RECOMBINANT COMPLEX '8-9D Fab' ? ? ? '1, 2' 3 1 RECOMBINANT COMPLEX 'SARS-CoV2 Omicron BA.5 RBD' ? ? ? 3 # _em_imaging.entry_id 8J1T _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8J1T _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8J1T _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR H 91 ? ? -140.86 46.35 2 1 SER K 9 ? ? 53.23 -128.18 3 1 ALA K 50 ? ? 59.74 -142.43 4 1 LEU K 54 ? ? 65.67 153.25 5 1 GLN K 79 ? ? 59.15 71.26 6 1 ASN K 92 ? ? -124.87 -162.82 7 1 MET K 97 ? ? 60.32 -117.84 8 1 PRO F 337 ? ? -81.32 45.03 9 1 ASN F 343 ? ? -102.47 46.82 10 1 GLN F 414 ? ? 67.65 153.60 11 1 TYR F 449 ? ? -65.05 0.79 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F LEU 517 ? C LEU 184 2 1 Y 1 F LEU 518 ? C LEU 185 3 1 Y 1 F HIS 519 ? C HIS 186 4 1 Y 1 F ALA 520 ? C ALA 187 5 1 Y 1 F PRO 521 ? C PRO 188 6 1 Y 1 F ALA 522 ? C ALA 189 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # loop_ _em_entity_assembly_molwt.entity_assembly_id _em_entity_assembly_molwt.experimental_flag _em_entity_assembly_molwt.id _em_entity_assembly_molwt.units _em_entity_assembly_molwt.value 1 YES 1 MEGADALTONS 0.046 1 YES 2 MEGADALTONS 0.024 1 YES 3 MEGADALTONS 0.022 # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue ? ? 1 2 2697049 'Severe acute respiratory syndrome coronavirus 2' ? ? ? ? ? ? 2 3 9606 'Homo sapiens' ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 1 2 9606 'Homo sapiens' ? ? ? 2 3 9606 'Homo sapiens' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9606 _em_virus_natural_host.organism 'Homo sapiens' _em_virus_natural_host.strain ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #