HEADER LIGASE 14-APR-23 8J25 TITLE CRYSTAL STRUCTURE OF PML B-BOX2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN,PROTEIN COMPND 3 PML; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MMBP,MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN, COMPND 6 MBP,E3 SUMO-PROTEIN LIGASE PML,PROMYELOCYTIC LEUKEMIA PROTEIN,RING COMPND 7 FINGER PROTEIN 71,RING-TYPE E3 SUMO TRANSFERASE PML,TRIPARTITE MOTIF- COMPND 8 CONTAINING PROTEIN 19,TRIM19; COMPND 9 EC: 2.3.2.-; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 83333, 9606; SOURCE 5 GENE: MALE, B4034, JW3994, PML, MYL, PP8675, RNF71, TRIM19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PML, TRIM19, B-BOX2, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHOU,N.ZANG,J.ZHANG REVDAT 2 20-DEC-23 8J25 1 JRNL REVDAT 1 20-SEP-23 8J25 0 JRNL AUTH P.BERCIER,Q.Q.WANG,N.ZANG,J.ZHANG,C.YANG,Y.MAIMAITIYIMING, JRNL AUTH 2 M.ABOU-GHALI,C.BERTHIER,C.WU,M.NIWA-KAWAKITA,T.DIRAMI, JRNL AUTH 3 M.C.GEOFFROY,O.FERHI,S.QUENTIN,S.BENHENDA,Y.OGRA,Z.GUEROUI, JRNL AUTH 4 C.ZHOU,H.NARANMANDURA,H.DE THE,V.LALLEMAND-BREITENBACH JRNL TITL STRUCTURAL BASIS OF PML-RARA ONCOPROTEIN TARGETING BY JRNL TITL 2 ARSENIC UNRAVELS A CYSTEINE RHEOSTAT CONTROLLING PML BODY JRNL TITL 3 ASSEMBLY AND FUNCTION. JRNL REF CANCER DISCOV V. 13 2548 2023 JRNL REFN ESSN 2159-8290 JRNL PMID 37655965 JRNL DOI 10.1158/2159-8290.CD-23-0453 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4924: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0800 - 5.4100 0.98 2807 182 0.1559 0.2055 REMARK 3 2 5.4000 - 4.2900 0.99 2855 134 0.1528 0.1719 REMARK 3 3 4.2900 - 3.7500 0.99 2902 123 0.1672 0.2173 REMARK 3 4 3.7500 - 3.4100 0.99 2860 139 0.1965 0.2746 REMARK 3 5 3.4100 - 3.1600 0.99 2839 161 0.2544 0.2921 REMARK 3 6 3.1600 - 2.9800 0.99 2866 145 0.2789 0.3259 REMARK 3 7 2.9800 - 2.8300 0.99 2954 105 0.3048 0.3672 REMARK 3 8 2.8300 - 2.7000 0.99 2866 131 0.3138 0.4081 REMARK 3 9 2.7000 - 2.6000 0.98 2853 135 0.3504 0.3717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3285 REMARK 3 ANGLE : 0.630 4464 REMARK 3 CHIRALITY : 0.042 494 REMARK 3 PLANARITY : 0.004 576 REMARK 3 DIHEDRAL : 17.986 1199 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -188 THROUGH -118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1984 -31.7373 -13.7408 REMARK 3 T TENSOR REMARK 3 T11: 0.5057 T22: 0.4872 REMARK 3 T33: 0.5005 T12: 0.0035 REMARK 3 T13: -0.0179 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.3136 L22: 1.7023 REMARK 3 L33: 2.0629 L12: -0.1985 REMARK 3 L13: 0.1850 L23: 0.1388 REMARK 3 S TENSOR REMARK 3 S11: -0.2424 S12: 0.2006 S13: 0.5249 REMARK 3 S21: -0.0110 S22: 0.2545 S23: -0.0168 REMARK 3 S31: -0.4734 S32: -0.2629 S33: -0.0406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -117 THROUGH -16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9703 -47.2505 -0.0426 REMARK 3 T TENSOR REMARK 3 T11: 0.3445 T22: 0.2723 REMARK 3 T33: 0.3862 T12: 0.0727 REMARK 3 T13: -0.0035 T23: -0.1295 REMARK 3 L TENSOR REMARK 3 L11: 2.9250 L22: 1.5702 REMARK 3 L33: 1.7978 L12: -0.2820 REMARK 3 L13: -0.5721 L23: -0.4325 REMARK 3 S TENSOR REMARK 3 S11: -0.1903 S12: -0.3757 S13: 0.1131 REMARK 3 S21: 0.2560 S22: 0.2758 S23: -0.2613 REMARK 3 S31: 0.2381 S32: -0.1215 S33: -0.0670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -15 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9265 -42.0594 0.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: 0.3514 REMARK 3 T33: 0.4247 T12: 0.0783 REMARK 3 T13: -0.0196 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 2.1767 L22: 1.2763 REMARK 3 L33: 1.5851 L12: -0.3464 REMARK 3 L13: 0.5511 L23: 0.3520 REMARK 3 S TENSOR REMARK 3 S11: -0.1431 S12: -0.2122 S13: 0.3102 REMARK 3 S21: 0.3677 S22: 0.1917 S23: -0.2278 REMARK 3 S31: -0.1066 S32: -0.0089 S33: -0.0453 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2104 -49.3853 -1.5156 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.3858 REMARK 3 T33: 0.3617 T12: 0.0462 REMARK 3 T13: 0.0411 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.2320 L22: 0.9210 REMARK 3 L33: 0.3791 L12: -0.1852 REMARK 3 L13: 0.5622 L23: 0.2241 REMARK 3 S TENSOR REMARK 3 S11: -0.2013 S12: -0.0556 S13: 0.1341 REMARK 3 S21: 0.3115 S22: 0.1991 S23: 0.0723 REMARK 3 S31: -0.0133 S32: -0.2255 S33: -0.0532 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6722 -64.4999 -12.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.5808 T22: 0.6442 REMARK 3 T33: 0.6886 T12: -0.0036 REMARK 3 T13: 0.1055 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 0.3165 L22: 2.3633 REMARK 3 L33: 0.2534 L12: 0.8560 REMARK 3 L13: 0.0460 L23: -0.2640 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: 0.0367 S13: -0.6888 REMARK 3 S21: -0.2544 S22: -0.1395 S23: -1.5863 REMARK 3 S31: 0.3563 S32: 1.1188 S33: 0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 19-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18400 REMARK 200 FOR THE DATA SET : 7.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.78400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.09366 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.77733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.78400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.09366 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.77733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.78400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.09366 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.77733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.78400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.09366 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.77733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.78400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.09366 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.77733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.78400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.09366 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.77733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.18732 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 107.55467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.18732 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 107.55467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.18732 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 107.55467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.18732 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.55467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.18732 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 107.55467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.18732 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 107.55467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -191 REMARK 465 GLY A -190 REMARK 465 LYS A -189 REMARK 465 LYS A 183 REMARK 465 THR A 184 REMARK 465 ASN A 185 REMARK 465 ASP A 228 REMARK 465 ILE A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 GLU A 232 REMARK 465 ILE A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 235 REMARK 465 ARG A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -48 CG CD CE NZ REMARK 470 LEU A 225 CG CD1 CD2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -18 -123.94 -127.58 REMARK 500 ASP A -10 76.08 -112.09 REMARK 500 ASP A 19 -167.86 -104.84 REMARK 500 ASP A 106 -82.11 -83.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 HIS A 194 NE2 105.3 REMARK 620 3 CYS A 212 SG 113.0 109.4 REMARK 620 4 CYS A 215 SG 116.8 108.4 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 204 SG REMARK 620 2 CYS A 207 SG 106.5 REMARK 620 3 HIS A 222 ND1 112.2 100.6 REMARK 620 4 CYS A 227 SG 113.0 115.9 108.1 REMARK 620 N 1 2 3 DBREF 8J25 A -189 176 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 8J25 A 183 236 UNP P29590 PML_HUMAN 183 236 SEQADV 8J25 MET A -191 UNP P0AEX9 INITIATING METHIONINE SEQADV 8J25 GLY A -190 UNP P0AEX9 EXPRESSION TAG SEQADV 8J25 ASN A 177 UNP P0AEX9 LINKER SEQADV 8J25 ALA A 178 UNP P0AEX9 LINKER SEQADV 8J25 ALA A 179 UNP P0AEX9 LINKER SEQADV 8J25 ALA A 180 UNP P0AEX9 LINKER SEQADV 8J25 GLU A 181 UNP P0AEX9 LINKER SEQADV 8J25 PHE A 182 UNP P0AEX9 LINKER SEQADV 8J25 ALA A 213 UNP P29590 CYS 213 ENGINEERED MUTATION SEQADV 8J25 VAL A 216 UNP P29590 ALA 216 ENGINEERED MUTATION SEQRES 1 A 428 MET GLY LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 A 428 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 A 428 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 A 428 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 A 428 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 A 428 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 A 428 ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU SEQRES 8 A 428 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 A 428 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 A 428 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 A 428 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 A 428 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 A 428 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 A 428 ALA PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP SEQRES 15 A 428 VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR SEQRES 16 A 428 PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA SEQRES 17 A 428 ASP THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS SEQRES 18 A 428 GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SEQRES 19 A 428 SER ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR SEQRES 20 A 428 VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE SEQRES 21 A 428 VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO SEQRES 22 A 428 ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU SEQRES 23 A 428 LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS SEQRES 24 A 428 PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU SEQRES 25 A 428 LEU ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN SEQRES 26 A 428 ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SEQRES 27 A 428 SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN SEQRES 28 A 428 ALA ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS SEQRES 29 A 428 ASP ALA GLN THR ASN ALA ALA ALA GLU PHE LYS THR ASN SEQRES 30 A 428 ASN ILE PHE CYS SER ASN PRO ASN HIS ARG THR PRO THR SEQRES 31 A 428 LEU THR SER ILE TYR CYS ARG GLY CYS SER LYS PRO LEU SEQRES 32 A 428 CYS ALA SER CYS VAL LEU LEU ASP SER SER HIS SER GLU SEQRES 33 A 428 LEU LYS CYS ASP ILE SER ALA GLU ILE GLN GLN ARG HET GLC B 1 12 HET GLC B 2 11 HET ZN A2501 1 HET ZN A2502 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *42(H2 O) HELIX 1 AA1 GLY A -174 GLY A -158 1 17 HELIX 2 AA2 LYS A -148 ALA A -139 1 10 HELIX 3 AA3 ALA A -138 GLY A -136 5 3 HELIX 4 AA4 ARG A -124 SER A -117 1 8 HELIX 5 AA5 ASP A -108 ASP A -103 1 6 HELIX 6 AA6 TYR A -100 VAL A -93 1 8 HELIX 7 AA7 GLU A -59 ALA A -49 1 11 HELIX 8 AA8 GLU A -37 ASP A -26 1 12 HELIX 9 AA9 ASN A -5 ASN A 11 1 17 HELIX 10 AB1 ASP A 19 LYS A 29 1 11 HELIX 11 AB2 GLY A 38 TRP A 40 5 3 HELIX 12 AB3 ALA A 41 SER A 48 1 8 HELIX 13 AB4 ASN A 82 TYR A 93 1 12 HELIX 14 AB5 THR A 96 LYS A 105 1 10 HELIX 15 AB6 LEU A 114 ALA A 122 1 9 HELIX 16 AB7 ASP A 124 GLY A 137 1 14 HELIX 17 AB8 GLN A 145 GLY A 163 1 19 HELIX 18 AB9 THR A 166 PHE A 182 1 17 HELIX 19 AC1 CYS A 212 ASP A 219 1 8 SHEET 1 AA1 6 VAL A-155 GLU A-152 0 SHEET 2 AA1 6 LEU A-183 TRP A-180 1 N ILE A-181 O GLU A-152 SHEET 3 AA1 6 ILE A-131 ALA A-127 1 O ILE A-131 N TRP A-180 SHEET 4 AA1 6 PHE A 68 ILE A 76 -1 O GLY A 75 N ILE A-130 SHEET 5 AA1 6 TYR A -84 GLU A -79 -1 N GLU A -79 O GLY A 70 SHEET 6 AA1 6 ALA A 111 VAL A 112 -1 O ALA A 111 N VAL A -80 SHEET 1 AA2 5 VAL A-155 GLU A-152 0 SHEET 2 AA2 5 LEU A-183 TRP A-180 1 N ILE A-181 O GLU A-152 SHEET 3 AA2 5 ILE A-131 ALA A-127 1 O ILE A-131 N TRP A-180 SHEET 4 AA2 5 PHE A 68 ILE A 76 -1 O GLY A 75 N ILE A-130 SHEET 5 AA2 5 GLU A 138 ILE A 139 1 O GLU A 138 N VAL A 69 SHEET 1 AA3 2 ARG A -92 TYR A -91 0 SHEET 2 AA3 2 LYS A -88 LEU A -87 -1 O LYS A -88 N TYR A -91 SHEET 1 AA4 4 SER A -45 LEU A -43 0 SHEET 2 AA4 4 THR A 32 ASN A 37 1 O ALA A 33 N SER A -45 SHEET 3 AA4 4 SER A -76 ASN A -72 -1 N ILE A -74 O THR A 35 SHEET 4 AA4 4 TYR A 52 THR A 55 -1 O THR A 55 N LEU A -75 SHEET 1 AA5 4 TYR A -23 TYR A -19 0 SHEET 2 AA5 4 LYS A -15 GLY A -8 -1 O ASP A -13 N LYS A -20 SHEET 3 AA5 4 ILE A 202 CYS A 204 -1 O TYR A 203 N TYR A -14 SHEET 4 AA5 4 LYS A 209 PRO A 210 -1 O LYS A 209 N CYS A 204 SHEET 1 AA6 2 ILE A 187 PHE A 188 0 SHEET 2 AA6 2 LEU A 199 THR A 200 -1 O THR A 200 N ILE A 187 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 LINK SG CYS A 189 ZN ZN A2501 1555 1555 2.32 LINK NE2 HIS A 194 ZN ZN A2501 1555 1555 2.09 LINK SG CYS A 204 ZN ZN A2502 1555 1555 2.32 LINK SG CYS A 207 ZN ZN A2502 1555 1555 2.32 LINK SG CYS A 212 ZN ZN A2501 1555 1555 2.31 LINK SG CYS A 215 ZN ZN A2501 1555 1555 2.32 LINK ND1 HIS A 222 ZN ZN A2502 1555 1555 2.10 LINK SG CYS A 227 ZN ZN A2502 1555 1555 2.33 CRYST1 121.568 121.568 161.332 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.004749 0.000000 0.00000 SCALE2 0.000000 0.009498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006198 0.00000