HEADER VIRAL PROTEIN/IMMUNE SYSTEM/DNA 14-APR-23 8J26 TITLE CRYOEM STRUCTURE OF SARS COV-2 RBD AND APTAMER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AM032-4; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN (REGN10987); COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB HEAVY CHAIN (REGN10987); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: SPIKE PROTEIN S1; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RBD; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: AM047-6; COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 MOL_ID: 4; SOURCE 18 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 19 2; SOURCE 20 ORGANISM_COMMON: 2019-NCOV,SARS-COV-2; SOURCE 21 ORGANISM_TAXID: 2697049; SOURCE 22 GENE: S, 2; SOURCE 23 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 25 MOL_ID: 5; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS APTAMER, SARS COV-2 RBD, INHIBITOR, NAPDU, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR M.S.RAHMAN,S.K.JANG,J.O.LEE REVDAT 2 12-JUL-23 8J26 1 JRNL REVDAT 1 21-JUN-23 8J26 0 JRNL AUTH M.S.RAHMAN,M.J.HAN,S.W.KIM,S.M.KANG,B.R.KIM,H.KIM,C.J.LEE, JRNL AUTH 2 J.E.NOH,H.KIM,J.O.LEE,S.K.JANG JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF BIVALENT APTAMERS BLOCKING JRNL TITL 2 SARS-COV-2 INFECTION. JRNL REF MOLECULES V. 28 2023 JRNL REFN ESSN 1420-3049 JRNL PMID 37375202 JRNL DOI 10.3390/MOLECULES28124645 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, UCSF REMARK 3 CHIMERA, PHENIX, COOT, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : SIMULTANEOUS ITERATIVE (SIRT) REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7KGJ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 212000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FINAL MAP GENERATED USING 3D FLEX RECONSTRUCTION REMARK 3 FOLLOWING NON-UNIFORM REFINEMENT REMARK 4 REMARK 4 8J26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037051. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RBD_FAB_AM032-4_AM047-6 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 2.5 UL OF SAMPLES PLACED ON REMARK 245 GRID BEFORE PLUNGE FROZEN WITH REMARK 245 5S BLOT TIME REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10018 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.73 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 105000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG E 23 REMARK 465 DC E 66 REMARK 465 GLN A 1 REMARK 465 SER A 2 REMARK 465 GLN A 112 REMARK 465 PRO A 113 REMARK 465 LYS A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 PRO A 117 REMARK 465 SER A 118 REMARK 465 VAL A 119 REMARK 465 THR A 120 REMARK 465 LEU A 121 REMARK 465 PHE A 122 REMARK 465 PRO A 123 REMARK 465 PRO A 124 REMARK 465 SER A 125 REMARK 465 SER A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 LEU A 129 REMARK 465 GLN A 130 REMARK 465 ALA A 131 REMARK 465 ASN A 132 REMARK 465 LYS A 133 REMARK 465 ALA A 134 REMARK 465 THR A 135 REMARK 465 LEU A 136 REMARK 465 VAL A 137 REMARK 465 CYS A 138 REMARK 465 LEU A 139 REMARK 465 ILE A 140 REMARK 465 SER A 141 REMARK 465 ASP A 142 REMARK 465 PHE A 143 REMARK 465 TYR A 144 REMARK 465 PRO A 145 REMARK 465 GLY A 146 REMARK 465 ALA A 147 REMARK 465 VAL A 148 REMARK 465 THR A 149 REMARK 465 VAL A 150 REMARK 465 ALA A 151 REMARK 465 TRP A 152 REMARK 465 LYS A 153 REMARK 465 ALA A 154 REMARK 465 ASP A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 PRO A 158 REMARK 465 VAL A 159 REMARK 465 LYS A 160 REMARK 465 ALA A 161 REMARK 465 GLY A 162 REMARK 465 VAL A 163 REMARK 465 GLU A 164 REMARK 465 THR A 165 REMARK 465 THR A 166 REMARK 465 THR A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 LYS A 170 REMARK 465 GLN A 171 REMARK 465 SER A 172 REMARK 465 ASN A 173 REMARK 465 ASN A 174 REMARK 465 LYS A 175 REMARK 465 TYR A 176 REMARK 465 ALA A 177 REMARK 465 ALA A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 TYR A 181 REMARK 465 LEU A 182 REMARK 465 SER A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 PRO A 186 REMARK 465 GLU A 187 REMARK 465 GLN A 188 REMARK 465 TRP A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 HIS A 192 REMARK 465 ARG A 193 REMARK 465 SER A 194 REMARK 465 TYR A 195 REMARK 465 SER A 196 REMARK 465 CYS A 197 REMARK 465 GLN A 198 REMARK 465 VAL A 199 REMARK 465 THR A 200 REMARK 465 HIS A 201 REMARK 465 GLU A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 VAL A 206 REMARK 465 GLU A 207 REMARK 465 LYS A 208 REMARK 465 THR A 209 REMARK 465 VAL A 210 REMARK 465 ALA A 211 REMARK 465 PRO A 212 REMARK 465 THR A 213 REMARK 465 GLU A 214 REMARK 465 CYS A 215 REMARK 465 SER A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 THR B 123 REMARK 465 LYS B 124 REMARK 465 GLY B 125 REMARK 465 PRO B 126 REMARK 465 SER B 127 REMARK 465 VAL B 128 REMARK 465 PHE B 129 REMARK 465 PRO B 130 REMARK 465 LEU B 131 REMARK 465 ALA B 132 REMARK 465 PRO B 133 REMARK 465 SER B 134 REMARK 465 SER B 135 REMARK 465 LYS B 136 REMARK 465 SER B 137 REMARK 465 THR B 138 REMARK 465 SER B 139 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 THR B 142 REMARK 465 ALA B 143 REMARK 465 ALA B 144 REMARK 465 LEU B 145 REMARK 465 GLY B 146 REMARK 465 CYS B 147 REMARK 465 LEU B 148 REMARK 465 VAL B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 465 TYR B 152 REMARK 465 PHE B 153 REMARK 465 PRO B 154 REMARK 465 GLU B 155 REMARK 465 PRO B 156 REMARK 465 VAL B 157 REMARK 465 THR B 158 REMARK 465 VAL B 159 REMARK 465 SER B 160 REMARK 465 TRP B 161 REMARK 465 ASN B 162 REMARK 465 SER B 163 REMARK 465 GLY B 164 REMARK 465 ALA B 165 REMARK 465 LEU B 166 REMARK 465 THR B 167 REMARK 465 SER B 168 REMARK 465 GLY B 169 REMARK 465 VAL B 170 REMARK 465 HIS B 171 REMARK 465 THR B 172 REMARK 465 PHE B 173 REMARK 465 PRO B 174 REMARK 465 ALA B 175 REMARK 465 VAL B 176 REMARK 465 LEU B 177 REMARK 465 GLN B 178 REMARK 465 SER B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 LEU B 182 REMARK 465 TYR B 183 REMARK 465 SER B 184 REMARK 465 LEU B 185 REMARK 465 SER B 186 REMARK 465 SER B 187 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 VAL B 191 REMARK 465 PRO B 192 REMARK 465 SER B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 LEU B 196 REMARK 465 GLY B 197 REMARK 465 THR B 198 REMARK 465 GLN B 199 REMARK 465 THR B 200 REMARK 465 TYR B 201 REMARK 465 ILE B 202 REMARK 465 CYS B 203 REMARK 465 ASN B 204 REMARK 465 VAL B 205 REMARK 465 ASN B 206 REMARK 465 HIS B 207 REMARK 465 LYS B 208 REMARK 465 PRO B 209 REMARK 465 SER B 210 REMARK 465 ASN B 211 REMARK 465 THR B 212 REMARK 465 LYS B 213 REMARK 465 VAL B 214 REMARK 465 ASP B 215 REMARK 465 LYS B 216 REMARK 465 LYS B 217 REMARK 465 VAL B 218 REMARK 465 GLU B 219 REMARK 465 PRO B 220 REMARK 465 LYS B 221 REMARK 465 SER B 222 REMARK 465 CYS B 223 REMARK 465 ASP B 224 REMARK 465 LYS B 225 REMARK 465 SER B 226 REMARK 465 ASN B 227 REMARK 465 SER B 228 REMARK 465 LEU B 229 REMARK 465 VAL B 230 REMARK 465 PRO B 231 REMARK 465 ARG B 232 REMARK 465 GLY B 233 REMARK 465 SER B 234 REMARK 465 PRO B 235 REMARK 465 SER B 236 REMARK 465 ARG B 237 REMARK 465 LEU B 238 REMARK 465 GLU B 239 REMARK 465 GLU B 240 REMARK 465 GLU B 241 REMARK 465 LEU B 242 REMARK 465 ARG B 243 REMARK 465 ARG B 244 REMARK 465 ARG B 245 REMARK 465 LEU B 246 REMARK 465 THR B 247 REMARK 465 GLU B 248 REMARK 465 ARG C 319 REMARK 465 VAL C 320 REMARK 465 GLN C 321 REMARK 465 PRO C 322 REMARK 465 THR C 323 REMARK 465 GLU C 324 REMARK 465 SER C 325 REMARK 465 ILE C 326 REMARK 465 VAL C 327 REMARK 465 ARG C 328 REMARK 465 PHE C 329 REMARK 465 PRO C 330 REMARK 465 ASN C 331 REMARK 465 ILE C 332 REMARK 465 LYS C 529 REMARK 465 SER C 530 REMARK 465 THR C 531 REMARK 465 ASN C 532 REMARK 465 LEU C 533 REMARK 465 VAL C 534 REMARK 465 LYS C 535 REMARK 465 ASN C 536 REMARK 465 LYS C 537 REMARK 465 CYS C 538 REMARK 465 VAL C 539 REMARK 465 ASN C 540 REMARK 465 PHE C 541 REMARK 465 GLU C 542 REMARK 465 ASN C 543 REMARK 465 LEU C 544 REMARK 465 TYR C 545 REMARK 465 PHE C 546 REMARK 465 GLN C 547 REMARK 465 GLY C 548 REMARK 465 ALA C 549 REMARK 465 ALA C 550 REMARK 465 ALA C 551 REMARK 465 GLY C 552 REMARK 465 GLY C 553 REMARK 465 SER C 554 REMARK 465 HIS C 555 REMARK 465 HIS C 556 REMARK 465 HIS C 557 REMARK 465 HIS C 558 REMARK 465 HIS C 559 REMARK 465 HIS C 560 REMARK 465 GLY C 561 REMARK 465 GLY C 562 REMARK 465 SER C 563 REMARK 465 ASP C 564 REMARK 465 TYR C 565 REMARK 465 LYS C 566 REMARK 465 ASP C 567 REMARK 465 ASP C 568 REMARK 465 ASP C 569 REMARK 465 ASP C 570 REMARK 465 LYS C 571 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 528 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 35 O ASP B 104 2.07 REMARK 500 N6 DA E 35 O SER C 494 2.07 REMARK 500 O2 DC E 36 OH TYR C 505 2.07 REMARK 500 OD1 ASN C 343 N2 NAG C 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 -174.15 62.45 REMARK 500 ILE A 96 55.75 33.60 REMARK 500 SER A 97 -121.52 58.80 REMARK 500 SER B 100 -166.49 -78.57 REMARK 500 TYR B 102 10.44 57.25 REMARK 500 VAL B 108 -60.80 -121.86 REMARK 500 ASN C 334 149.43 67.08 REMARK 500 ALA C 372 162.43 63.73 REMARK 500 ASP C 428 37.25 -98.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35945 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF SARS COV-2 RBD AND APTAMER COMPLEX DBREF 8J26 E 23 66 PDB 8J26 8J26 23 66 DBREF 8J26 A 1 224 PDB 8J26 8J26 1 224 DBREF 8J26 B 1 248 PDB 8J26 8J26 1 248 DBREF 8J26 C 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 8J26 D 3 50 PDB 8J26 8J26 3 50 SEQADV 8J26 GLU C 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASN C 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 LEU C 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 TYR C 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 PHE C 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLN C 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLY C 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ALA C 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ALA C 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ALA C 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLY C 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLY C 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 SER C 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 HIS C 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLY C 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 GLY C 562 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 SER C 563 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASP C 564 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 TYR C 565 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 LYS C 566 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASP C 567 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASP C 568 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASP C 569 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 ASP C 570 UNP P0DTC2 EXPRESSION TAG SEQADV 8J26 LYS C 571 UNP P0DTC2 EXPRESSION TAG SEQRES 1 E 44 DG DC DG DG DT DG DA DA DC DC 85Y 85Y DA SEQRES 2 E 44 DC DG 85Y 85Y DC DA DA DC 85Y DG DG DA 85Y SEQRES 3 E 44 DC DG 85Y DG 85Y DG 85Y DA DG DG 85Y DG DC SEQRES 4 E 44 DA DC DC DG DC SEQRES 1 A 224 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 A 224 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 A 224 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 A 224 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP SEQRES 5 A 224 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 A 224 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 A 224 GLY LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ASN SEQRES 8 A 224 SER LEU THR SER ILE SER THR TRP VAL PHE GLY GLY GLY SEQRES 9 A 224 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 A 224 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 A 224 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 A 224 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 A 224 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 A 224 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 A 224 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 A 224 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 A 224 THR VAL ALA PRO THR GLU CYS SER HIS HIS HIS HIS HIS SEQRES 18 A 224 HIS HIS HIS SEQRES 1 B 248 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 B 248 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 248 PHE THR PHE SER ASN TYR ALA MET TYR TRP VAL ARG GLN SEQRES 4 B 248 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 B 248 TYR ASP GLY SER ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 248 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 248 LEU TYR LEU GLN MET ASN SER LEU ARG THR GLU ASP THR SEQRES 8 B 248 ALA VAL TYR TYR CYS ALA SER GLY SER ASP TYR GLY ASP SEQRES 9 B 248 TYR LEU LEU VAL TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 248 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 B 248 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 B 248 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 B 248 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 B 248 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 B 248 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 B 248 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 B 248 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 B 248 SER CYS ASP LYS SER ASN SER LEU VAL PRO ARG GLY SER SEQRES 19 B 248 PRO SER ARG LEU GLU GLU GLU LEU ARG ARG ARG LEU THR SEQRES 20 B 248 GLU SEQRES 1 C 253 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 C 253 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 C 253 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 C 253 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 C 253 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 C 253 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 C 253 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 C 253 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 C 253 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 C 253 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 C 253 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 C 253 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 C 253 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 C 253 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 C 253 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 C 253 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 C 253 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 C 253 ASN PHE GLU ASN LEU TYR PHE GLN GLY ALA ALA ALA GLY SEQRES 19 C 253 GLY SER HIS HIS HIS HIS HIS HIS GLY GLY SER ASP TYR SEQRES 20 C 253 LYS ASP ASP ASP ASP LYS SEQRES 1 D 48 DG DG DC DG DG DC DA DA DG DG DG DA DG SEQRES 2 D 48 DC 85Y DA DG 85Y DG 85Y DA 85Y DG DC DC DC SEQRES 3 D 48 DC 85Y DG DA DG 85Y 85Y DG DG DG DG DA 85Y SEQRES 4 D 48 DA 85Y DC DG DC DC DG DC DC HET 85Y E 33 33 HET 85Y E 34 33 HET 85Y E 38 33 HET 85Y E 39 33 HET 85Y E 44 33 HET 85Y E 48 33 HET 85Y E 51 33 HET 85Y E 53 33 HET 85Y E 55 33 HET 85Y E 59 33 HET 85Y D 17 33 HET 85Y D 20 33 HET 85Y D 22 33 HET 85Y D 24 33 HET 85Y D 30 33 HET 85Y D 34 33 HET 85Y D 35 33 HET 85Y D 41 33 HET 85Y D 43 33 HET NAG C 701 14 HETNAM 85Y 2'-DEOXY-5-{[(NAPHTHALEN-2-YL)METHYL]CARBAMOYL}URIDINE HETNAM 2 85Y 5'-(DIHYDROGEN PHOSPHATE) HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 85Y 19(C21 H22 N3 O9 P) FORMUL 6 NAG C8 H15 N O6 HELIX 1 AA1 GLN A 81 GLU A 85 5 5 HELIX 2 AA2 THR B 28 TYR B 32 5 5 HELIX 3 AA3 ASP B 62 LYS B 65 5 4 HELIX 4 AA4 ARG B 87 THR B 91 5 5 HELIX 5 AA5 PRO C 337 ASN C 343 1 7 HELIX 6 AA6 SER C 349 TRP C 353 5 5 HELIX 7 AA7 ASP C 364 TYR C 369 1 6 HELIX 8 AA8 SER C 383 LEU C 390 5 8 HELIX 9 AA9 GLY C 404 ARG C 408 1 5 HELIX 10 AB1 GLY C 416 ASN C 422 1 7 HELIX 11 AB2 SER C 438 SER C 443 1 6 SHEET 1 AA1 2 SER A 9 SER A 11 0 SHEET 2 AA1 2 LYS A 106 THR A 108 1 O LYS A 106 N VAL A 10 SHEET 1 AA2 3 SER A 17 THR A 23 0 SHEET 2 AA2 3 THR A 72 SER A 78 -1 O ALA A 73 N CYS A 22 SHEET 3 AA2 3 SER A 65 SER A 69 -1 N SER A 69 O THR A 72 SHEET 1 AA3 3 LYS A 47 ILE A 50 0 SHEET 2 AA3 3 SER A 36 GLN A 40 -1 N TRP A 37 O MET A 49 SHEET 3 AA3 3 ASP A 87 ASN A 91 -1 O TYR A 89 N TYR A 38 SHEET 1 AA4 4 GLN B 3 GLU B 6 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA5 5 LYS B 58 TYR B 60 0 SHEET 2 AA5 5 LEU B 45 ILE B 51 -1 N VAL B 50 O TYR B 59 SHEET 3 AA5 5 TYR B 35 GLN B 39 -1 N TRP B 36 O ALA B 49 SHEET 4 AA5 5 ALA B 92 ALA B 97 -1 O TYR B 95 N VAL B 37 SHEET 5 AA5 5 THR B 114 VAL B 116 -1 O VAL B 116 N ALA B 92 SHEET 1 AA6 5 LYS C 356 ILE C 358 0 SHEET 2 AA6 5 ASN C 394 ARG C 403 -1 O ALA C 397 N LYS C 356 SHEET 3 AA6 5 PRO C 507 GLU C 516 -1 O VAL C 512 N ASP C 398 SHEET 4 AA6 5 GLY C 431 ASN C 437 -1 N CYS C 432 O LEU C 513 SHEET 5 AA6 5 PHE C 374 TYR C 380 -1 N SER C 375 O ALA C 435 SHEET 1 AA7 2 LEU C 452 ARG C 454 0 SHEET 2 AA7 2 LEU C 492 SER C 494 -1 O GLN C 493 N TYR C 453 SHEET 1 AA8 2 TYR C 473 GLN C 474 0 SHEET 2 AA8 2 CYS C 488 TYR C 489 -1 O TYR C 489 N TYR C 473 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.04 SSBOND 3 CYS C 336 CYS C 361 1555 1555 2.03 SSBOND 4 CYS C 379 CYS C 432 1555 1555 2.04 SSBOND 5 CYS C 391 CYS C 525 1555 1555 2.05 SSBOND 6 CYS C 480 CYS C 488 1555 1555 2.03 LINK O3' DC E 32 P 85Y E 33 1555 1555 1.61 LINK O3' 85Y E 33 P 85Y E 34 1555 1555 1.61 LINK O3' 85Y E 34 P DA E 35 1555 1555 1.61 LINK O3' DG E 37 P 85Y E 38 1555 1555 1.61 LINK O3' 85Y E 38 P 85Y E 39 1555 1555 1.61 LINK O3' 85Y E 39 P DC E 40 1555 1555 1.61 LINK O3' DC E 43 P 85Y E 44 1555 1555 1.61 LINK O3' 85Y E 44 P DG E 45 1555 1555 1.61 LINK O3' DA E 47 P 85Y E 48 1555 1555 1.61 LINK O3' 85Y E 48 P DC E 49 1555 1555 1.61 LINK O3' DG E 50 P 85Y E 51 1555 1555 1.61 LINK O3' 85Y E 51 P DG E 52 1555 1555 1.61 LINK O3' DG E 52 P 85Y E 53 1555 1555 1.61 LINK O3' 85Y E 53 P DG E 54 1555 1555 1.61 LINK O3' DG E 54 P 85Y E 55 1555 1555 1.61 LINK O3' 85Y E 55 P DA E 56 1555 1555 1.61 LINK O3' DG E 58 P 85Y E 59 1555 1555 1.61 LINK O3' 85Y E 59 P DG E 60 1555 1555 1.61 LINK ND2 ASN C 343 C1 NAG C 701 1555 1555 1.45 LINK O3' DC D 16 P 85Y D 17 1555 1555 1.61 LINK O3' 85Y D 17 P DA D 18 1555 1555 1.61 LINK O3' DG D 19 P 85Y D 20 1555 1555 1.61 LINK O3' 85Y D 20 P DG D 21 1555 1555 1.61 LINK O3' DG D 21 P 85Y D 22 1555 1555 1.61 LINK O3' 85Y D 22 P DA D 23 1555 1555 1.61 LINK O3' DA D 23 P 85Y D 24 1555 1555 1.61 LINK O3' 85Y D 24 P DG D 25 1555 1555 1.61 LINK O3' DC D 29 P 85Y D 30 1555 1555 1.60 LINK O3' 85Y D 30 P DG D 31 1555 1555 1.61 LINK O3' DG D 33 P 85Y D 34 1555 1555 1.61 LINK O3' 85Y D 34 P 85Y D 35 1555 1555 1.61 LINK O3' 85Y D 35 P DG D 36 1555 1555 1.61 LINK O3' DA D 40 P 85Y D 41 1555 1555 1.61 LINK O3' 85Y D 41 P DA D 42 1555 1555 1.61 LINK O3' DA D 42 P 85Y D 43 1555 1555 1.61 LINK O3' 85Y D 43 P DC D 44 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000