HEADER HYDROLASE 18-APR-23 8J3X TITLE CRYSTAL STRUCTURE OF CBM6E FROM SACCHAROPHAGUS DEGRADANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYSACCHARIDE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS (STRAIN 2-40 / ATCC SOURCE 3 43961 / DSM 17024); SOURCE 4 ORGANISM_TAXID: 203122; SOURCE 5 GENE: CBM6E, SDE_1445; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,F.LI REVDAT 1 24-APR-24 8J3X 0 JRNL AUTH C.HE,F.LI JRNL TITL STRUCTURAL INSIGHTS INTO CBM6E FROM SACCHAROPHAGUS DEGRADANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6800 - 5.6000 1.00 2922 172 0.1752 0.2147 REMARK 3 2 5.6000 - 4.4600 1.00 2841 136 0.1425 0.1676 REMARK 3 3 4.4600 - 3.9000 1.00 2810 143 0.1384 0.2044 REMARK 3 4 3.9000 - 3.5500 1.00 2790 130 0.1626 0.2036 REMARK 3 5 3.5500 - 3.3000 1.00 2758 143 0.1757 0.2290 REMARK 3 6 3.3000 - 3.1000 0.99 2750 136 0.2042 0.2568 REMARK 3 7 3.1000 - 2.9500 1.00 2740 139 0.2099 0.2571 REMARK 3 8 2.9500 - 2.8200 0.99 2734 140 0.2330 0.2860 REMARK 3 9 2.8200 - 2.7100 0.99 2728 158 0.2316 0.3091 REMARK 3 10 2.7100 - 2.6200 0.99 2704 138 0.2295 0.2802 REMARK 3 11 2.6200 - 2.5400 0.99 2746 122 0.2421 0.3040 REMARK 3 12 2.5400 - 2.4600 0.99 2710 141 0.2519 0.3085 REMARK 3 13 2.4600 - 2.4000 0.99 2698 138 0.2701 0.3360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6450 REMARK 3 ANGLE : 0.920 8798 REMARK 3 CHIRALITY : 0.053 899 REMARK 3 PLANARITY : 0.008 1151 REMARK 3 DIHEDRAL : 14.184 2253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2481 10.7675 -45.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.3671 T22: 0.4211 REMARK 3 T33: 0.5169 T12: 0.0181 REMARK 3 T13: 0.0661 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 5.1594 REMARK 3 L33: 1.8653 L12: 0.1796 REMARK 3 L13: -0.2366 L23: -0.6160 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.1473 S13: 0.0399 REMARK 3 S21: -0.8589 S22: -0.0960 S23: -0.6681 REMARK 3 S31: 0.0787 S32: 0.0570 S33: 0.0982 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5663 20.2801 -15.9377 REMARK 3 T TENSOR REMARK 3 T11: 0.5506 T22: 0.3560 REMARK 3 T33: 0.4275 T12: -0.0182 REMARK 3 T13: -0.1867 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.4900 L22: 3.1736 REMARK 3 L33: 2.4262 L12: -0.3461 REMARK 3 L13: 0.5868 L23: -0.7079 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: -0.2360 S13: 0.2064 REMARK 3 S21: 1.0292 S22: -0.0091 S23: -0.4216 REMARK 3 S31: -0.3582 S32: -0.0050 S33: 0.1406 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6528 -19.3931 -5.0066 REMARK 3 T TENSOR REMARK 3 T11: 0.8936 T22: 0.5502 REMARK 3 T33: 0.7213 T12: 0.0168 REMARK 3 T13: -0.3051 T23: 0.1481 REMARK 3 L TENSOR REMARK 3 L11: 0.8974 L22: 2.6498 REMARK 3 L33: 2.1167 L12: 0.8074 REMARK 3 L13: 0.7563 L23: -0.8457 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.1349 S13: -0.3129 REMARK 3 S21: 1.2251 S22: -0.2552 S23: -0.8917 REMARK 3 S31: 0.2501 S32: 0.4032 S33: -0.1323 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 197 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4300 -8.9494 -10.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.5765 T22: 0.4004 REMARK 3 T33: 0.3565 T12: 0.0325 REMARK 3 T13: -0.0422 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.0433 L22: 3.6010 REMARK 3 L33: 2.7456 L12: 0.7908 REMARK 3 L13: -0.0498 L23: -0.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.2691 S13: -0.0394 REMARK 3 S21: 0.9804 S22: -0.1919 S23: -0.0588 REMARK 3 S31: -0.2515 S32: -0.0487 S33: 0.1251 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6806 -22.7877 -37.3084 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.3243 REMARK 3 T33: 0.4250 T12: 0.0268 REMARK 3 T13: 0.0403 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8734 L22: 3.0408 REMARK 3 L33: 2.0563 L12: 0.2701 REMARK 3 L13: -0.0797 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.0850 S13: -0.1855 REMARK 3 S21: -0.1829 S22: 0.0289 S23: -0.1960 REMARK 3 S31: 0.1574 S32: -0.0364 S33: 0.0163 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.00300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5, 25% (W/V) POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.40350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.01650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.40350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.01650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 82 REMARK 465 MSE A 83 REMARK 465 ALA A 84 REMARK 465 HIS B 82 REMARK 465 MSE B 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 377 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 96 139.70 -174.09 REMARK 500 ASN A 144 35.59 -98.09 REMARK 500 GLN A 174 -132.89 -113.79 REMARK 500 CYS A 234 55.71 -102.17 REMARK 500 ASN A 265 34.97 71.07 REMARK 500 TRP A 276 -44.81 -148.57 REMARK 500 LEU A 328 -114.25 -103.71 REMARK 500 GLU A 359 8.72 -69.66 REMARK 500 LEU A 378 -47.41 63.27 REMARK 500 SER A 385 -109.45 -151.17 REMARK 500 SER A 409 116.74 -161.06 REMARK 500 LYS A 460 79.91 -110.30 REMARK 500 TYR B 96 137.12 -174.62 REMARK 500 GLN B 174 -126.99 -117.34 REMARK 500 ASN B 197 73.32 54.62 REMARK 500 CYS B 234 47.28 -92.15 REMARK 500 ALA B 274 145.46 -176.97 REMARK 500 TRP B 276 -43.47 -150.06 REMARK 500 PRO B 322 33.28 -93.72 REMARK 500 LEU B 328 -113.51 -107.53 REMARK 500 LEU B 378 -59.87 69.89 REMARK 500 SER B 385 -100.89 -151.95 REMARK 500 MSE B 439 148.83 -170.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 357 OE1 REMARK 620 2 GLU A 359 OE1 103.5 REMARK 620 3 GLU A 359 OE2 91.7 49.7 REMARK 620 4 GLY A 377 O 82.9 121.0 71.8 REMARK 620 5 ALA A 379 O 171.8 80.6 85.5 88.9 REMARK 620 6 ASN A 467 O 88.3 83.3 131.5 155.4 99.4 REMARK 620 7 ASN A 467 OD1 103.1 139.3 157.0 92.4 77.4 67.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 357 OE1 REMARK 620 2 GLU B 359 OE1 95.6 REMARK 620 3 GLU B 359 OE2 85.5 49.9 REMARK 620 4 ALA B 379 O 170.6 88.3 90.6 REMARK 620 5 ASN B 467 O 86.1 85.6 133.4 102.8 REMARK 620 6 ASN B 467 OD1 98.4 149.5 158.0 82.2 68.6 REMARK 620 N 1 2 3 4 5 DBREF 8J3X A 84 473 UNP Q21KS2 Q21KS2_SACD2 84 473 DBREF 8J3X B 84 473 UNP Q21KS2 Q21KS2_SACD2 84 473 SEQADV 8J3X HIS A 82 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3X MSE A 83 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3X HIS B 82 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3X MSE B 83 UNP Q21KS2 EXPRESSION TAG SEQRES 1 A 392 HIS MSE ALA GLN ASP MSE ARG SER GLU LYS ARG GLY LEU SEQRES 2 A 392 ALA TYR GLY TYR HIS SER GLU ASN ASP LEU LYS ALA MSE SEQRES 3 A 392 GLN GLY LYS VAL LYS TRP TRP TYR ASN TRP ASP THR GLN SEQRES 4 A 392 ALA ASP ALA ASN VAL LYS GLU ASN TYR ALA SER TYR GLY SEQRES 5 A 392 TYR ASP PHE VAL PRO MSE ALA TRP ASP GLU ASN PHE ASN SEQRES 6 A 392 GLU GLU ALA LEU ARG SER PHE LEU ASP ASN HIS PRO ASP SEQRES 7 A 392 VAL LYS TYR LEU LEU GLY TRP ASN GLU PRO ASN PHE MSE SEQRES 8 A 392 GLU GLN ALA ASN LEU THR PRO ALA GLU ALA ALA ALA HIS SEQRES 9 A 392 TRP PRO VAL LEU GLU ALA ILE ALA GLN ASP TYR ASN LEU SEQRES 10 A 392 LYS LEU VAL ALA PRO ALA VAL ASN TYR SER PRO GLY ASN SEQRES 11 A 392 VAL ASP ILE PRO GLY THR ASP ASP ASP TYR ASP PRO TRP SEQRES 12 A 392 LEU TYR LEU ASP ALA PHE PHE GLU ALA CYS GLU GLY CYS SEQRES 13 A 392 GLN VAL ASP TYR ILE ALA VAL HIS CYS TYR MSE LYS TYR SEQRES 14 A 392 GLU SER ALA PHE SER TRP TYR VAL GLY GLU PHE GLU ARG SEQRES 15 A 392 TYR ASN LYS PRO ILE TRP VAL THR GLU TRP ALA GLY TRP SEQRES 16 A 392 ASP ASP GLY GLY PRO ALA ASN MSE GLY GLU GLN MSE ASN SEQRES 17 A 392 PHE LEU SER ASP THR VAL ARG TRP MSE GLU SER ASN ASP SEQRES 18 A 392 ASN ILE TYR ARG TYR SER TRP PHE LEU GLY ARG SER SER SEQRES 19 A 392 GLU GLY TYR ASP GLN PHE PRO TYR LEU ASP VAL LEU LEU SEQRES 20 A 392 ALA ASP GLY GLU LEU THR PRO LEU GLY SER VAL TYR THR SEQRES 21 A 392 SER ILE PRO SER ASN ASP PHE ARG TYR LYS ILE PRO ALA SEQRES 22 A 392 ARG ILE GLU ALA GLU GLY ALA HIS SER LEU THR GLY PHE SEQRES 23 A 392 LYS HIS LEU ALA THR THR ASP THR THR GLY LEU ALA LYS SEQRES 24 A 392 LEU ILE ALA ALA SER ASN GLU VAL ALA GLU TYR LYS LEU SEQRES 25 A 392 ASN VAL GLU GLU GLY GLY ASP TYR THR LEU ALA LEU ARG SEQRES 26 A 392 LEU ALA SER SER ALA ASN SER ASP ILE ALA ILE ARG VAL SEQRES 27 A 392 ASP GLY LEU LEU VAL TYR THR PHE GLU ASP ILE ASN THR SEQRES 28 A 392 GLY GLY VAL GLU ALA TRP MSE THR PHE SER SER THR PRO SEQRES 29 A 392 ILE SER LEU THR ALA GLY ASP HIS ILE LEU ARG VAL GLU SEQRES 30 A 392 SER LYS SER SER ARG PHE GLY PHE ASN TRP LEU GLU LEU SEQRES 31 A 392 THR ASN SEQRES 1 B 392 HIS MSE ALA GLN ASP MSE ARG SER GLU LYS ARG GLY LEU SEQRES 2 B 392 ALA TYR GLY TYR HIS SER GLU ASN ASP LEU LYS ALA MSE SEQRES 3 B 392 GLN GLY LYS VAL LYS TRP TRP TYR ASN TRP ASP THR GLN SEQRES 4 B 392 ALA ASP ALA ASN VAL LYS GLU ASN TYR ALA SER TYR GLY SEQRES 5 B 392 TYR ASP PHE VAL PRO MSE ALA TRP ASP GLU ASN PHE ASN SEQRES 6 B 392 GLU GLU ALA LEU ARG SER PHE LEU ASP ASN HIS PRO ASP SEQRES 7 B 392 VAL LYS TYR LEU LEU GLY TRP ASN GLU PRO ASN PHE MSE SEQRES 8 B 392 GLU GLN ALA ASN LEU THR PRO ALA GLU ALA ALA ALA HIS SEQRES 9 B 392 TRP PRO VAL LEU GLU ALA ILE ALA GLN ASP TYR ASN LEU SEQRES 10 B 392 LYS LEU VAL ALA PRO ALA VAL ASN TYR SER PRO GLY ASN SEQRES 11 B 392 VAL ASP ILE PRO GLY THR ASP ASP ASP TYR ASP PRO TRP SEQRES 12 B 392 LEU TYR LEU ASP ALA PHE PHE GLU ALA CYS GLU GLY CYS SEQRES 13 B 392 GLN VAL ASP TYR ILE ALA VAL HIS CYS TYR MSE LYS TYR SEQRES 14 B 392 GLU SER ALA PHE SER TRP TYR VAL GLY GLU PHE GLU ARG SEQRES 15 B 392 TYR ASN LYS PRO ILE TRP VAL THR GLU TRP ALA GLY TRP SEQRES 16 B 392 ASP ASP GLY GLY PRO ALA ASN MSE GLY GLU GLN MSE ASN SEQRES 17 B 392 PHE LEU SER ASP THR VAL ARG TRP MSE GLU SER ASN ASP SEQRES 18 B 392 ASN ILE TYR ARG TYR SER TRP PHE LEU GLY ARG SER SER SEQRES 19 B 392 GLU GLY TYR ASP GLN PHE PRO TYR LEU ASP VAL LEU LEU SEQRES 20 B 392 ALA ASP GLY GLU LEU THR PRO LEU GLY SER VAL TYR THR SEQRES 21 B 392 SER ILE PRO SER ASN ASP PHE ARG TYR LYS ILE PRO ALA SEQRES 22 B 392 ARG ILE GLU ALA GLU GLY ALA HIS SER LEU THR GLY PHE SEQRES 23 B 392 LYS HIS LEU ALA THR THR ASP THR THR GLY LEU ALA LYS SEQRES 24 B 392 LEU ILE ALA ALA SER ASN GLU VAL ALA GLU TYR LYS LEU SEQRES 25 B 392 ASN VAL GLU GLU GLY GLY ASP TYR THR LEU ALA LEU ARG SEQRES 26 B 392 LEU ALA SER SER ALA ASN SER ASP ILE ALA ILE ARG VAL SEQRES 27 B 392 ASP GLY LEU LEU VAL TYR THR PHE GLU ASP ILE ASN THR SEQRES 28 B 392 GLY GLY VAL GLU ALA TRP MSE THR PHE SER SER THR PRO SEQRES 29 B 392 ILE SER LEU THR ALA GLY ASP HIS ILE LEU ARG VAL GLU SEQRES 30 B 392 SER LYS SER SER ARG PHE GLY PHE ASN TRP LEU GLU LEU SEQRES 31 B 392 THR ASN MODRES 8J3X MSE A 87 MET MODIFIED RESIDUE MODRES 8J3X MSE A 107 MET MODIFIED RESIDUE MODRES 8J3X MSE A 139 MET MODIFIED RESIDUE MODRES 8J3X MSE A 172 MET MODIFIED RESIDUE MODRES 8J3X MSE A 248 MET MODIFIED RESIDUE MODRES 8J3X MSE A 284 MET MODIFIED RESIDUE MODRES 8J3X MSE A 288 MET MODIFIED RESIDUE MODRES 8J3X MSE A 298 MET MODIFIED RESIDUE MODRES 8J3X MSE A 439 MET MODIFIED RESIDUE MODRES 8J3X MSE B 87 MET MODIFIED RESIDUE MODRES 8J3X MSE B 107 MET MODIFIED RESIDUE MODRES 8J3X MSE B 139 MET MODIFIED RESIDUE MODRES 8J3X MSE B 172 MET MODIFIED RESIDUE MODRES 8J3X MSE B 248 MET MODIFIED RESIDUE MODRES 8J3X MSE B 284 MET MODIFIED RESIDUE MODRES 8J3X MSE B 288 MET MODIFIED RESIDUE MODRES 8J3X MSE B 298 MET MODIFIED RESIDUE MODRES 8J3X MSE B 439 MET MODIFIED RESIDUE HET MSE A 87 8 HET MSE A 107 8 HET MSE A 139 8 HET MSE A 172 8 HET MSE A 248 8 HET MSE A 284 8 HET MSE A 288 8 HET MSE A 298 8 HET MSE A 439 8 HET MSE B 87 8 HET MSE B 107 8 HET MSE B 139 8 HET MSE B 172 8 HET MSE B 248 8 HET MSE B 284 8 HET MSE B 288 8 HET MSE B 298 8 HET MSE B 439 8 HET GOL A 501 6 HET MG A 502 1 HET MG B 501 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *174(H2 O) HELIX 1 AA1 SER A 100 GLN A 108 1 9 HELIX 2 AA2 ASN A 128 GLY A 133 5 6 HELIX 3 AA3 ASN A 146 ASN A 156 1 11 HELIX 4 AA4 THR A 178 HIS A 185 1 8 HELIX 5 AA5 HIS A 185 ASN A 197 1 13 HELIX 6 AA6 ASP A 222 CYS A 234 1 13 HELIX 7 AA7 TYR A 250 GLU A 260 1 11 HELIX 8 AA8 PHE A 261 ASN A 265 5 5 HELIX 9 AA9 ASN A 283 ASN A 301 1 19 HELIX 10 AB1 THR A 334 ILE A 343 1 10 HELIX 11 AB2 GLU A 359 ALA A 361 5 3 HELIX 12 AB3 SER B 100 GLN B 108 1 9 HELIX 13 AB4 ASP B 122 LYS B 126 5 5 HELIX 14 AB5 ASN B 128 GLY B 133 5 6 HELIX 15 AB6 ASN B 146 HIS B 157 1 12 HELIX 16 AB7 THR B 178 HIS B 185 1 8 HELIX 17 AB8 HIS B 185 ASN B 197 1 13 HELIX 18 AB9 ASP B 222 CYS B 234 1 13 HELIX 19 AC1 TYR B 250 GLU B 260 1 11 HELIX 20 AC2 PHE B 261 ASN B 265 5 5 HELIX 21 AC3 ASN B 283 ASN B 301 1 19 HELIX 22 AC4 THR B 334 ILE B 343 1 10 HELIX 23 AC5 GLU B 359 ALA B 361 5 3 SHEET 1 AA1 6 ASP A 135 PHE A 136 0 SHEET 2 AA1 6 TRP A 113 TYR A 115 1 N TRP A 114 O ASP A 135 SHEET 3 AA1 6 ARG A 92 ALA A 95 1 N LEU A 94 O TYR A 115 SHEET 4 AA1 6 ILE A 304 PHE A 310 1 O TYR A 307 N GLY A 93 SHEET 5 AA1 6 ILE A 268 TRP A 273 1 N VAL A 270 O ARG A 306 SHEET 6 AA1 6 ILE A 242 CYS A 246 1 N ILE A 242 O TRP A 269 SHEET 1 AA2 2 TYR A 162 LEU A 164 0 SHEET 2 AA2 2 LYS A 199 VAL A 201 1 O VAL A 201 N LEU A 163 SHEET 1 AA3 3 TYR A 350 LYS A 351 0 SHEET 2 AA3 3 VAL A 388 VAL A 395 1 O ASN A 394 N TYR A 350 SHEET 3 AA3 3 SER A 363 THR A 365 -1 N THR A 365 O VAL A 388 SHEET 1 AA4 5 TYR A 350 LYS A 351 0 SHEET 2 AA4 5 VAL A 388 VAL A 395 1 O ASN A 394 N TYR A 350 SHEET 3 AA4 5 GLY A 451 SER A 459 -1 O VAL A 457 N ALA A 389 SHEET 4 AA4 5 SER A 413 VAL A 419 -1 N ALA A 416 O GLU A 458 SHEET 5 AA4 5 LEU A 422 ILE A 430 -1 O ILE A 430 N SER A 413 SHEET 1 AA5 4 ALA A 354 GLU A 357 0 SHEET 2 AA5 4 PHE A 464 THR A 472 -1 O LEU A 469 N ILE A 356 SHEET 3 AA5 4 GLY A 399 ALA A 408 -1 N ALA A 408 O GLY A 465 SHEET 4 AA5 4 MSE A 439 SER A 442 -1 O PHE A 441 N LEU A 405 SHEET 1 AA6 5 LYS A 368 ALA A 371 0 SHEET 2 AA6 5 ALA A 379 ALA A 383 -1 O LYS A 380 N LEU A 370 SHEET 3 AA6 5 PHE A 464 THR A 472 -1 O PHE A 466 N LEU A 381 SHEET 4 AA6 5 GLY A 399 ALA A 408 -1 N ALA A 408 O GLY A 465 SHEET 5 AA6 5 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 399 SHEET 1 AA7 4 ARG B 92 ALA B 95 0 SHEET 2 AA7 4 ILE B 304 PHE B 310 1 O TYR B 307 N GLY B 93 SHEET 3 AA7 4 ILE B 268 TRP B 273 1 N ILE B 268 O TYR B 305 SHEET 4 AA7 4 ILE B 242 CYS B 246 1 N ILE B 242 O TRP B 269 SHEET 1 AA8 2 TRP B 113 TRP B 114 0 SHEET 2 AA8 2 ASP B 135 PHE B 136 1 O ASP B 135 N TRP B 114 SHEET 1 AA9 2 TYR B 162 LEU B 164 0 SHEET 2 AA9 2 LYS B 199 VAL B 201 1 O VAL B 201 N LEU B 163 SHEET 1 AB1 3 TYR B 350 LYS B 351 0 SHEET 2 AB1 3 VAL B 388 VAL B 395 1 O ASN B 394 N TYR B 350 SHEET 3 AB1 3 SER B 363 THR B 365 -1 N THR B 365 O VAL B 388 SHEET 1 AB2 5 TYR B 350 LYS B 351 0 SHEET 2 AB2 5 VAL B 388 VAL B 395 1 O ASN B 394 N TYR B 350 SHEET 3 AB2 5 GLY B 451 SER B 459 -1 O VAL B 457 N ALA B 389 SHEET 4 AB2 5 SER B 413 VAL B 419 -1 N ARG B 418 O ARG B 456 SHEET 5 AB2 5 LEU B 422 ILE B 430 -1 O ILE B 430 N SER B 413 SHEET 1 AB3 4 ALA B 354 GLU B 357 0 SHEET 2 AB3 4 PHE B 464 THR B 472 -1 O LEU B 469 N ILE B 356 SHEET 3 AB3 4 GLY B 399 ALA B 408 -1 N THR B 402 O THR B 472 SHEET 4 AB3 4 MSE B 439 SER B 442 -1 O MSE B 439 N LEU B 407 SHEET 1 AB4 5 LYS B 368 ALA B 371 0 SHEET 2 AB4 5 ALA B 379 ALA B 383 -1 O LYS B 380 N LEU B 370 SHEET 3 AB4 5 PHE B 464 THR B 472 -1 O PHE B 466 N LEU B 381 SHEET 4 AB4 5 GLY B 399 ALA B 408 -1 N THR B 402 O THR B 472 SHEET 5 AB4 5 ILE B 446 LEU B 448 -1 O ILE B 446 N TYR B 401 SSBOND 1 CYS A 234 CYS A 237 1555 1555 2.04 SSBOND 2 CYS B 234 CYS B 237 1555 1555 2.04 LINK C ASP A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N ARG A 88 1555 1555 1.33 LINK C ALA A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLN A 108 1555 1555 1.34 LINK C PRO A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ALA A 140 1555 1555 1.34 LINK C PHE A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N GLU A 173 1555 1555 1.33 LINK C TYR A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N LYS A 249 1555 1555 1.33 LINK C ASN A 283 N MSE A 284 1555 1555 1.33 LINK C MSE A 284 N GLY A 285 1555 1555 1.34 LINK C GLN A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N ASN A 289 1555 1555 1.34 LINK C TRP A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N GLU A 299 1555 1555 1.34 LINK C TRP A 438 N MSE A 439 1555 1555 1.33 LINK C MSE A 439 N THR A 440 1555 1555 1.33 LINK C ASP B 86 N MSE B 87 1555 1555 1.32 LINK C MSE B 87 N ARG B 88 1555 1555 1.34 LINK C ALA B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N GLN B 108 1555 1555 1.34 LINK C PRO B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N ALA B 140 1555 1555 1.33 LINK C PHE B 171 N MSE B 172 1555 1555 1.33 LINK C MSE B 172 N GLU B 173 1555 1555 1.33 LINK C TYR B 247 N MSE B 248 1555 1555 1.32 LINK C MSE B 248 N LYS B 249 1555 1555 1.34 LINK C ASN B 283 N MSE B 284 1555 1555 1.32 LINK C MSE B 284 N GLY B 285 1555 1555 1.34 LINK C GLN B 287 N MSE B 288 1555 1555 1.33 LINK C MSE B 288 N ASN B 289 1555 1555 1.34 LINK C TRP B 297 N MSE B 298 1555 1555 1.33 LINK C MSE B 298 N GLU B 299 1555 1555 1.33 LINK C TRP B 438 N MSE B 439 1555 1555 1.33 LINK C MSE B 439 N THR B 440 1555 1555 1.33 LINK OE1 GLU A 357 MG MG A 502 1555 1555 2.38 LINK OE1 GLU A 359 MG MG A 502 1555 1555 2.69 LINK OE2 GLU A 359 MG MG A 502 1555 1555 2.57 LINK O GLY A 377 MG MG A 502 1555 1555 2.59 LINK O ALA A 379 MG MG A 502 1555 1555 2.32 LINK O ASN A 467 MG MG A 502 1555 1555 2.49 LINK OD1 ASN A 467 MG MG A 502 1555 1555 2.62 LINK OE1 GLU B 357 MG MG B 501 1555 1555 2.35 LINK OE1 GLU B 359 MG MG B 501 1555 1555 2.43 LINK OE2 GLU B 359 MG MG B 501 1555 1555 2.72 LINK O ALA B 379 MG MG B 501 1555 1555 2.37 LINK O ASN B 467 MG MG B 501 1555 1555 2.44 LINK OD1 ASN B 467 MG MG B 501 1555 1555 2.52 CISPEP 1 PHE A 310 LEU A 311 0 2.91 CISPEP 2 PHE A 321 PRO A 322 0 5.20 CISPEP 3 ILE A 352 PRO A 353 0 -2.02 CISPEP 4 PHE B 310 LEU B 311 0 11.56 CISPEP 5 PHE B 321 PRO B 322 0 -4.45 CISPEP 6 ILE B 352 PRO B 353 0 1.17 CRYST1 84.807 146.033 76.847 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013013 0.00000