HEADER PLANT PROTEIN 19-APR-23 8J4A TITLE CRYSTAL STRUCTURE OF OY PHYTOPLASMA SAP05 IN COMPLEX WITH ATRPN10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUENCE-VARIABLE MOSAIC (SVM) SIGNAL SEQUENCE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A, C; COMPND 5 SYNONYM: OY-M SAP05; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG; COMPND 9 CHAIN: D, B; COMPND 10 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN10,ATRPN10,26S COMPND 11 PROTEASOME REGULATORY SUBUNIT S5A HOMOLOG,MULTIUBIQUITIN CHAIN- COMPND 12 BINDING PROTEIN 1,ATMCB1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ONION YELLOWS PHYTOPLASMA OY-M; SOURCE 3 ORGANISM_TAXID: 262768; SOURCE 4 STRAIN: OY-M; SOURCE 5 GENE: PAM_518; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: RPN10, MBP1, MCB1, AT4G38630, F20M13.190, T9A14.7; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-INDEPENDENT PROTEIN DEGRADATION, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,X.YAN,X.YUAN REVDAT 3 08-MAY-24 8J4A 1 JRNL REVDAT 2 06-MAR-24 8J4A 1 TITLE REVDAT 1 28-FEB-24 8J4A 0 JRNL AUTH X.YAN,X.YUAN,J.LV,B.ZHANG,Y.HUANG,Q.LI,J.MA,Y.LI,X.WANG, JRNL AUTH 2 Y.LI,Y.YU,Q.LIU,T.LIU,W.MI,C.DONG JRNL TITL MOLECULAR BASIS OF SAP05-MEDIATED UBIQUITIN-INDEPENDENT JRNL TITL 2 PROTEASOMAL DEGRADATION OF TRANSCRIPTION FACTORS. JRNL REF NAT COMMUN V. 15 1170 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38326322 JRNL DOI 10.1038/S41467-024-45521-7 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 38204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9500 - 4.6400 0.97 3018 145 0.1720 0.2293 REMARK 3 2 4.6400 - 3.6800 0.98 2902 166 0.1498 0.1702 REMARK 3 3 3.6800 - 3.2200 0.87 2575 134 0.1685 0.2342 REMARK 3 4 3.2200 - 2.9200 0.97 2883 145 0.1967 0.2742 REMARK 3 5 2.9200 - 2.7100 0.98 2868 132 0.2019 0.2669 REMARK 3 6 2.7100 - 2.5500 0.88 2608 134 0.2035 0.2768 REMARK 3 7 2.5500 - 2.4300 0.98 2915 128 0.1965 0.2669 REMARK 3 8 2.4300 - 2.3200 0.98 2882 143 0.2024 0.2781 REMARK 3 9 2.3200 - 2.2300 0.99 2867 172 0.2059 0.2622 REMARK 3 10 2.2300 - 2.1500 0.98 2887 138 0.2085 0.2459 REMARK 3 11 2.1500 - 2.0900 0.98 2881 152 0.2086 0.3018 REMARK 3 12 2.0900 - 2.0300 0.74 2153 103 0.2220 0.3010 REMARK 3 13 2.0300 - 1.9700 0.98 2932 141 0.2449 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.467 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4676 REMARK 3 ANGLE : 0.969 6320 REMARK 3 CHIRALITY : 0.056 708 REMARK 3 PLANARITY : 0.005 830 REMARK 3 DIHEDRAL : 5.981 618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 48.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46790 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM ACETATE DEHYDRATE, 18% REMARK 280 PEG3350, 0.1 M GUANINE HYDROCHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.29300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 32 REMARK 465 GLN A 134 REMARK 465 LYS A 135 REMARK 465 GLY C 32 REMARK 465 GLN C 134 REMARK 465 LYS C 135 REMARK 465 ASP D 147 REMARK 465 ASP B 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 36 O HOH C 201 1.73 REMARK 500 OE2 GLU C 133 O HOH C 202 1.89 REMARK 500 ND2 ASN B 34 O HOH B 201 2.07 REMARK 500 O HOH A 238 O HOH A 271 2.07 REMARK 500 O HOH D 210 O HOH D 216 2.07 REMARK 500 O HOH D 326 O HOH D 340 2.09 REMARK 500 O HOH D 301 O HOH D 328 2.09 REMARK 500 O LYS D 119 O HOH D 201 2.09 REMARK 500 N ALA A 33 O HOH A 201 2.09 REMARK 500 O HOH A 221 O HOH B 225 2.09 REMARK 500 O HOH C 262 O HOH B 301 2.11 REMARK 500 OE1 GLN D 95 O HOH D 202 2.11 REMARK 500 OG SER B 136 O HOH B 202 2.12 REMARK 500 OE1 GLU C 115 O HOH C 203 2.13 REMARK 500 O HOH A 303 O HOH A 305 2.14 REMARK 500 O HOH A 202 O HOH A 213 2.14 REMARK 500 O SER D 136 O HOH D 203 2.16 REMARK 500 OD1 ASN D 135 O HOH D 202 2.16 REMARK 500 O HOH C 296 O HOH B 301 2.16 REMARK 500 O HOH B 263 O HOH B 296 2.16 REMARK 500 O HOH D 212 O HOH D 301 2.16 REMARK 500 O HOH A 205 O HOH A 300 2.17 REMARK 500 O HOH A 231 O HOH A 309 2.18 REMARK 500 O HOH C 202 O HOH C 301 2.18 REMARK 500 O HOH A 260 O HOH A 267 2.18 REMARK 500 O HOH A 268 O HOH B 266 2.18 REMARK 500 O HOH C 287 O HOH C 297 2.18 REMARK 500 NH2 ARG D 60 O HOH D 204 2.19 REMARK 500 O HOH D 215 O HOH D 280 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 227 O HOH D 279 2656 2.09 REMARK 500 O HOH D 282 O HOH D 291 2756 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 52 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU B 52 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 -172.34 69.58 REMARK 500 ASN C 102 -174.81 64.46 REMARK 500 MET D 1 -109.83 61.09 REMARK 500 ALA D 55 -127.22 -127.14 REMARK 500 LYS D 57 38.79 -99.17 REMARK 500 MET B 1 -46.91 72.50 REMARK 500 ASN B 44 118.88 -161.24 REMARK 500 ALA B 55 -123.66 -123.17 REMARK 500 LYS B 119 44.26 -84.13 REMARK 500 THR B 192 54.45 -101.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR C 132 GLU C 133 146.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 341 DISTANCE = 6.41 ANGSTROMS DBREF 8J4A A 33 135 UNP Q6YQ57 Q6YQ57_ONYPE 33 135 DBREF 8J4A C 33 135 UNP Q6YQ57 Q6YQ57_ONYPE 33 135 DBREF 8J4A D 1 193 UNP P55034 PSMD4_ARATH 1 193 DBREF 8J4A B 1 193 UNP P55034 PSMD4_ARATH 1 193 SEQADV 8J4A GLY A 32 UNP Q6YQ57 EXPRESSION TAG SEQADV 8J4A GLY C 32 UNP Q6YQ57 EXPRESSION TAG SEQADV 8J4A GLY D 0 UNP P55034 EXPRESSION TAG SEQADV 8J4A GLY B 0 UNP P55034 EXPRESSION TAG SEQRES 1 A 104 GLY ALA PRO HIS GLU GLU ARG VAL GLY ASP MET ARG ILE SEQRES 2 A 104 VAL ASN ILE THR PHE SER ASP ILE ASN SER ILE LYS ASN SEQRES 3 A 104 PHE GLN PRO PHE SER GLN TYR PHE ASP PHE THR LEU THR SEQRES 4 A 104 GLY PRO ARG TYR ASN GLY ASN ILE ALA GLN PHE ALA MET SEQRES 5 A 104 ILE TRP LYS ILE LYS ASN PRO PRO HIS ASN LEU LEU GLY SEQRES 6 A 104 VAL PHE PHE ASP ASN ASN THR ARG ASP ASP GLU ASP ASP SEQRES 7 A 104 LYS TYR THR LEU GLU GLU LEU LYS GLN MET GLY ASN GLY SEQRES 8 A 104 ALA LYS ASN MET TYR ILE PHE TRP GLN TYR GLU GLN LYS SEQRES 1 C 104 GLY ALA PRO HIS GLU GLU ARG VAL GLY ASP MET ARG ILE SEQRES 2 C 104 VAL ASN ILE THR PHE SER ASP ILE ASN SER ILE LYS ASN SEQRES 3 C 104 PHE GLN PRO PHE SER GLN TYR PHE ASP PHE THR LEU THR SEQRES 4 C 104 GLY PRO ARG TYR ASN GLY ASN ILE ALA GLN PHE ALA MET SEQRES 5 C 104 ILE TRP LYS ILE LYS ASN PRO PRO HIS ASN LEU LEU GLY SEQRES 6 C 104 VAL PHE PHE ASP ASN ASN THR ARG ASP ASP GLU ASP ASP SEQRES 7 C 104 LYS TYR THR LEU GLU GLU LEU LYS GLN MET GLY ASN GLY SEQRES 8 C 104 ALA LYS ASN MET TYR ILE PHE TRP GLN TYR GLU GLN LYS SEQRES 1 D 194 GLY MET VAL LEU GLU ALA THR MET ILE CYS ILE ASP ASN SEQRES 2 D 194 SER GLU TRP MET ARG ASN GLY ASP TYR SER PRO SER ARG SEQRES 3 D 194 LEU GLN ALA GLN THR GLU ALA VAL ASN LEU LEU CYS GLY SEQRES 4 D 194 ALA LYS THR GLN SER ASN PRO GLU ASN THR VAL GLY ILE SEQRES 5 D 194 LEU THR MET ALA GLY LYS GLY VAL ARG VAL LEU THR THR SEQRES 6 D 194 PRO THR SER ASP LEU GLY LYS ILE LEU ALA CYS MET HIS SEQRES 7 D 194 GLY LEU ASP VAL GLY GLY GLU ILE ASN LEU THR ALA ALA SEQRES 8 D 194 ILE GLN ILE ALA GLN LEU ALA LEU LYS HIS ARG GLN ASN SEQRES 9 D 194 LYS ASN GLN ARG GLN ARG ILE ILE VAL PHE ALA GLY SER SEQRES 10 D 194 PRO ILE LYS TYR GLU LYS LYS ALA LEU GLU ILE VAL GLY SEQRES 11 D 194 LYS ARG LEU LYS LYS ASN SER VAL SER LEU ASP ILE VAL SEQRES 12 D 194 ASN PHE GLY GLU ASP ASP ASP GLU GLU LYS PRO GLN LYS SEQRES 13 D 194 LEU GLU ALA LEU LEU THR ALA VAL ASN ASN ASN ASP GLY SEQRES 14 D 194 SER HIS ILE VAL HIS VAL PRO SER GLY ALA ASN ALA LEU SEQRES 15 D 194 SER ASP VAL LEU LEU SER THR PRO VAL PHE THR GLY SEQRES 1 B 194 GLY MET VAL LEU GLU ALA THR MET ILE CYS ILE ASP ASN SEQRES 2 B 194 SER GLU TRP MET ARG ASN GLY ASP TYR SER PRO SER ARG SEQRES 3 B 194 LEU GLN ALA GLN THR GLU ALA VAL ASN LEU LEU CYS GLY SEQRES 4 B 194 ALA LYS THR GLN SER ASN PRO GLU ASN THR VAL GLY ILE SEQRES 5 B 194 LEU THR MET ALA GLY LYS GLY VAL ARG VAL LEU THR THR SEQRES 6 B 194 PRO THR SER ASP LEU GLY LYS ILE LEU ALA CYS MET HIS SEQRES 7 B 194 GLY LEU ASP VAL GLY GLY GLU ILE ASN LEU THR ALA ALA SEQRES 8 B 194 ILE GLN ILE ALA GLN LEU ALA LEU LYS HIS ARG GLN ASN SEQRES 9 B 194 LYS ASN GLN ARG GLN ARG ILE ILE VAL PHE ALA GLY SER SEQRES 10 B 194 PRO ILE LYS TYR GLU LYS LYS ALA LEU GLU ILE VAL GLY SEQRES 11 B 194 LYS ARG LEU LYS LYS ASN SER VAL SER LEU ASP ILE VAL SEQRES 12 B 194 ASN PHE GLY GLU ASP ASP ASP GLU GLU LYS PRO GLN LYS SEQRES 13 B 194 LEU GLU ALA LEU LEU THR ALA VAL ASN ASN ASN ASP GLY SEQRES 14 B 194 SER HIS ILE VAL HIS VAL PRO SER GLY ALA ASN ALA LEU SEQRES 15 B 194 SER ASP VAL LEU LEU SER THR PRO VAL PHE THR GLY FORMUL 5 HOH *477(H2 O) HELIX 1 AA1 ASP A 51 PHE A 58 5 8 HELIX 2 AA2 PRO A 60 TYR A 64 5 5 HELIX 3 AA3 THR A 112 LYS A 117 1 6 HELIX 4 AA4 ASP C 51 PHE C 58 5 8 HELIX 5 AA5 PRO C 60 PHE C 65 5 6 HELIX 6 AA6 THR C 112 LYS C 117 1 6 HELIX 7 AA7 SER D 13 ASN D 18 5 6 HELIX 8 AA8 SER D 24 ASN D 44 1 21 HELIX 9 AA9 ASP D 68 CYS D 75 1 8 HELIX 10 AB1 ASN D 86 HIS D 100 1 15 HELIX 11 AB2 GLU D 121 ASN D 135 1 15 HELIX 12 AB3 GLU D 150 ASN D 164 1 15 HELIX 13 AB4 ALA D 180 SER D 187 1 8 HELIX 14 AB5 THR D 188 GLY D 193 1 6 HELIX 15 AB6 SER B 13 ASN B 18 5 6 HELIX 16 AB7 SER B 24 ASN B 44 1 21 HELIX 17 AB8 ASP B 68 CYS B 75 1 8 HELIX 18 AB9 ASN B 86 HIS B 100 1 15 HELIX 19 AC1 GLU B 121 ASN B 135 1 15 HELIX 20 AC2 GLU B 151 ASN B 164 1 14 HELIX 21 AC3 ALA B 180 SER B 187 1 8 SHEET 1 AA110 LEU A 94 PHE A 99 0 SHEET 2 AA110 ASN A 125 GLN A 131 -1 O TYR A 127 N PHE A 98 SHEET 3 AA110 MET A 42 PHE A 49 1 N VAL A 45 O ILE A 128 SHEET 4 AA110 HIS A 35 VAL A 39 -1 N GLU A 37 O ILE A 44 SHEET 5 AA110 HIS C 35 VAL C 39 -1 O ARG C 38 N GLU A 36 SHEET 6 AA110 MET C 42 PHE C 49 -1 O ILE C 44 N GLU C 37 SHEET 7 AA110 ASN C 125 GLN C 131 1 O TRP C 130 N ILE C 47 SHEET 8 AA110 LEU C 94 PHE C 99 -1 N LEU C 95 O PHE C 129 SHEET 9 AA110 ARG C 73 ASN C 75 1 N ARG C 73 O VAL C 97 SHEET 10 AA110 MET C 83 LYS C 86 -1 O TRP C 85 N TYR C 74 SHEET 1 AA2 2 ARG A 73 ASN A 75 0 SHEET 2 AA2 2 MET A 83 LYS A 86 -1 O TRP A 85 N TYR A 74 SHEET 1 AA3 6 ARG D 60 THR D 66 0 SHEET 2 AA3 6 THR D 48 THR D 53 -1 N ILE D 51 O LEU D 62 SHEET 3 AA3 6 GLU D 4 ILE D 10 1 N ILE D 10 O LEU D 52 SHEET 4 AA3 6 ARG D 107 ALA D 114 1 O ILE D 111 N CYS D 9 SHEET 5 AA3 6 VAL D 137 ASN D 143 1 O ASP D 140 N VAL D 112 SHEET 6 AA3 6 HIS D 170 HIS D 173 1 O VAL D 172 N ASN D 143 SHEET 1 AA4 6 ARG B 60 THR B 66 0 SHEET 2 AA4 6 THR B 48 THR B 53 -1 N VAL B 49 O THR B 66 SHEET 3 AA4 6 GLU B 4 ILE B 10 1 N ILE B 8 O GLY B 50 SHEET 4 AA4 6 ARG B 107 ALA B 114 1 O ARG B 107 N ALA B 5 SHEET 5 AA4 6 VAL B 137 ASN B 143 1 O VAL B 142 N VAL B 112 SHEET 6 AA4 6 HIS B 170 HIS B 173 1 O VAL B 172 N ASN B 143 CISPEP 1 GLN A 59 PRO A 60 0 -1.62 CISPEP 2 GLN C 59 PRO C 60 0 4.15 CISPEP 3 SER D 22 PRO D 23 0 -5.05 CISPEP 4 SER B 22 PRO B 23 0 -3.55 CRYST1 54.045 40.586 130.329 90.00 93.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018503 0.000000 0.000974 0.00000 SCALE2 0.000000 0.024639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007684 0.00000