data_8J7R # _entry.id 8J7R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8J7R pdb_00008j7r 10.2210/pdb8j7r/pdb WWPDB D_1300036888 ? ? EMDB EMD-36046 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'EMD-35041 is the map of the same protein complex refined with a full mask' EMD-35041 'other EM volume' PDB '8HUJ is the model for EMD-35041' 8HUJ unspecified EMDB 'Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)' EMD-36046 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8J7R _pdbx_database_status.recvd_initial_deposition_date 2023-04-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Suzuki, H.' 1 0000-0001-5371-6385 'Fujiyoshi, Y.' 2 0000-0002-8070-1493 'Imai, S.' 3 0000-0001-9346-2359 'Shimada, I.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 4977 _citation.page_last 4977 _citation.title 'Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-40582-6 _citation.pdbx_database_id_PubMed 37640715 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Imai, S.' 1 0000-0001-9346-2359 primary 'Suzuki, H.' 2 0000-0001-5371-6385 primary 'Fujiyoshi, Y.' 3 0000-0002-8070-1493 primary 'Shimada, I.' 4 0000-0001-5168-8894 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8J7R _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8J7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Eukaryotic translation initiation factor 4 gamma 1' 31786.811 1 ? ? ? ? 2 polymer syn 'IRES RNA (J-K-St)' 34838.609 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'eIF-4-gamma 1,eIF-4G 1,eIF-4G1,p220' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MNHKVHHHHHHIEGRHMELGTLEDRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIF EKAISEPNFSVAYANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKE ELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQM EKIIKEKKTSSRIRFMLQDVLDLRGSNWVP ; ;MNHKVHHHHHHIEGRHMELGTLEDRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIF EKAISEPNFSVAYANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKE ELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQM EKIIKEKKTSSRIRFMLQDVLDLRGSNWVP ; B ? 2 polyribonucleotide no no ;GGGGCUGAAGGAUGCCCAGAAGGUACCCCAUUGUAUGGGAUCUGAUCUGGGGCCUCGGUGCACAUGCUUUACAUGUGUUU AGUCGAGGUUAAAAAACGUCUAGGCCCC ; ;GGGGCUGAAGGAUGCCCAGAAGGUACCCCAUUGUAUGGGAUCUGAUCUGGGGCCUCGGUGCACAUGCUUUACAUGUGUUU AGUCGAGGUUAAAAAACGUCUAGGCCCC ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 HIS n 1 4 LYS n 1 5 VAL n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 ILE n 1 13 GLU n 1 14 GLY n 1 15 ARG n 1 16 HIS n 1 17 MET n 1 18 GLU n 1 19 LEU n 1 20 GLY n 1 21 THR n 1 22 LEU n 1 23 GLU n 1 24 ASP n 1 25 ARG n 1 26 GLY n 1 27 GLU n 1 28 GLU n 1 29 ASP n 1 30 ALA n 1 31 ASP n 1 32 GLY n 1 33 SER n 1 34 LYS n 1 35 THR n 1 36 GLN n 1 37 ASP n 1 38 LEU n 1 39 PHE n 1 40 ARG n 1 41 ARG n 1 42 VAL n 1 43 ARG n 1 44 SER n 1 45 ILE n 1 46 LEU n 1 47 ASN n 1 48 LYS n 1 49 LEU n 1 50 THR n 1 51 PRO n 1 52 GLN n 1 53 MET n 1 54 PHE n 1 55 GLN n 1 56 GLN n 1 57 LEU n 1 58 MET n 1 59 LYS n 1 60 GLN n 1 61 VAL n 1 62 THR n 1 63 GLN n 1 64 LEU n 1 65 ALA n 1 66 ILE n 1 67 ASP n 1 68 THR n 1 69 GLU n 1 70 GLU n 1 71 ARG n 1 72 LEU n 1 73 LYS n 1 74 GLY n 1 75 VAL n 1 76 ILE n 1 77 ASP n 1 78 LEU n 1 79 ILE n 1 80 PHE n 1 81 GLU n 1 82 LYS n 1 83 ALA n 1 84 ILE n 1 85 SER n 1 86 GLU n 1 87 PRO n 1 88 ASN n 1 89 PHE n 1 90 SER n 1 91 VAL n 1 92 ALA n 1 93 TYR n 1 94 ALA n 1 95 ASN n 1 96 MET n 1 97 CYS n 1 98 ARG n 1 99 CYS n 1 100 LEU n 1 101 MET n 1 102 ALA n 1 103 LEU n 1 104 LYS n 1 105 VAL n 1 106 PRO n 1 107 THR n 1 108 THR n 1 109 GLU n 1 110 LYS n 1 111 PRO n 1 112 THR n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 ASN n 1 117 PHE n 1 118 ARG n 1 119 LYS n 1 120 LEU n 1 121 LEU n 1 122 LEU n 1 123 ASN n 1 124 ARG n 1 125 CYS n 1 126 GLN n 1 127 LYS n 1 128 GLU n 1 129 PHE n 1 130 GLU n 1 131 LYS n 1 132 ASP n 1 133 LYS n 1 134 ASP n 1 135 ASP n 1 136 ASP n 1 137 GLU n 1 138 VAL n 1 139 PHE n 1 140 GLU n 1 141 LYS n 1 142 LYS n 1 143 GLN n 1 144 LYS n 1 145 GLU n 1 146 MET n 1 147 ASP n 1 148 GLU n 1 149 ALA n 1 150 ALA n 1 151 THR n 1 152 ALA n 1 153 GLU n 1 154 GLU n 1 155 ARG n 1 156 GLY n 1 157 ARG n 1 158 LEU n 1 159 LYS n 1 160 GLU n 1 161 GLU n 1 162 LEU n 1 163 GLU n 1 164 GLU n 1 165 ALA n 1 166 ARG n 1 167 ASP n 1 168 ILE n 1 169 ALA n 1 170 ARG n 1 171 ARG n 1 172 ARG n 1 173 SER n 1 174 LEU n 1 175 GLY n 1 176 ASN n 1 177 ILE n 1 178 LYS n 1 179 PHE n 1 180 ILE n 1 181 GLY n 1 182 GLU n 1 183 LEU n 1 184 PHE n 1 185 LYS n 1 186 LEU n 1 187 LYS n 1 188 MET n 1 189 LEU n 1 190 THR n 1 191 GLU n 1 192 ALA n 1 193 ILE n 1 194 MET n 1 195 HIS n 1 196 ASP n 1 197 CYS n 1 198 VAL n 1 199 VAL n 1 200 LYS n 1 201 LEU n 1 202 LEU n 1 203 LYS n 1 204 ASN n 1 205 HIS n 1 206 ASP n 1 207 GLU n 1 208 GLU n 1 209 SER n 1 210 LEU n 1 211 GLU n 1 212 CYS n 1 213 LEU n 1 214 CYS n 1 215 ARG n 1 216 LEU n 1 217 LEU n 1 218 THR n 1 219 THR n 1 220 ILE n 1 221 GLY n 1 222 LYS n 1 223 ASP n 1 224 LEU n 1 225 ASP n 1 226 PHE n 1 227 GLU n 1 228 LYS n 1 229 ALA n 1 230 LYS n 1 231 PRO n 1 232 ARG n 1 233 MET n 1 234 ASP n 1 235 GLN n 1 236 TYR n 1 237 PHE n 1 238 ASN n 1 239 GLN n 1 240 MET n 1 241 GLU n 1 242 LYS n 1 243 ILE n 1 244 ILE n 1 245 LYS n 1 246 GLU n 1 247 LYS n 1 248 LYS n 1 249 THR n 1 250 SER n 1 251 SER n 1 252 ARG n 1 253 ILE n 1 254 ARG n 1 255 PHE n 1 256 MET n 1 257 LEU n 1 258 GLN n 1 259 ASP n 1 260 VAL n 1 261 LEU n 1 262 ASP n 1 263 LEU n 1 264 ARG n 1 265 GLY n 1 266 SER n 1 267 ASN n 1 268 TRP n 1 269 VAL n 1 270 PRO n 2 1 G n 2 2 G n 2 3 G n 2 4 G n 2 5 C n 2 6 U n 2 7 G n 2 8 A n 2 9 A n 2 10 G n 2 11 G n 2 12 A n 2 13 U n 2 14 G n 2 15 C n 2 16 C n 2 17 C n 2 18 A n 2 19 G n 2 20 A n 2 21 A n 2 22 G n 2 23 G n 2 24 U n 2 25 A n 2 26 C n 2 27 C n 2 28 C n 2 29 C n 2 30 A n 2 31 U n 2 32 U n 2 33 G n 2 34 U n 2 35 A n 2 36 U n 2 37 G n 2 38 G n 2 39 G n 2 40 A n 2 41 U n 2 42 C n 2 43 U n 2 44 G n 2 45 A n 2 46 U n 2 47 C n 2 48 U n 2 49 G n 2 50 G n 2 51 G n 2 52 G n 2 53 C n 2 54 C n 2 55 U n 2 56 C n 2 57 G n 2 58 G n 2 59 U n 2 60 G n 2 61 C n 2 62 A n 2 63 C n 2 64 A n 2 65 U n 2 66 G n 2 67 C n 2 68 U n 2 69 U n 2 70 U n 2 71 A n 2 72 C n 2 73 A n 2 74 U n 2 75 G n 2 76 U n 2 77 G n 2 78 U n 2 79 U n 2 80 U n 2 81 A n 2 82 G n 2 83 U n 2 84 C n 2 85 G n 2 86 A n 2 87 G n 2 88 G n 2 89 U n 2 90 U n 2 91 A n 2 92 A n 2 93 A n 2 94 A n 2 95 A n 2 96 A n 2 97 C n 2 98 G n 2 99 U n 2 100 C n 2 101 U n 2 102 A n 2 103 G n 2 104 G n 2 105 C n 2 106 C n 2 107 C n 2 108 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 270 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EIF4G1, EIF4F, EIF4G, EIF4GI' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 108 _pdbx_entity_src_syn.organism_scientific 'Encephalomyocarditis virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 12104 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP IF4G1_HUMAN Q04637 ? 1 ;DRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGEL FKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDL RGSNWVP ; 746 2 GB NC_001479.1 NC_001479.1 ? 2 ;GGGGCUGAAGGAUGCCCAGAAGGUACCCCAUUGUAUGGGAUCUGAUCUGGGGCCUCGGUGCACAUGCUUUACAUGUGUUU AGUCGAGGUUAAAAAACGUCUAGGCCCC ; 680 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8J7R B 24 ? 270 ? Q04637 746 ? 992 ? 746 992 2 2 8J7R C 1 ? 108 ? NC_001479.1 680 ? 787 ? 680 787 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8J7R MET B 1 ? UNP Q04637 ? ? 'initiating methionine' 723 1 1 8J7R ASN B 2 ? UNP Q04637 ? ? 'expression tag' 724 2 1 8J7R HIS B 3 ? UNP Q04637 ? ? 'expression tag' 725 3 1 8J7R LYS B 4 ? UNP Q04637 ? ? 'expression tag' 726 4 1 8J7R VAL B 5 ? UNP Q04637 ? ? 'expression tag' 727 5 1 8J7R HIS B 6 ? UNP Q04637 ? ? 'expression tag' 728 6 1 8J7R HIS B 7 ? UNP Q04637 ? ? 'expression tag' 729 7 1 8J7R HIS B 8 ? UNP Q04637 ? ? 'expression tag' 730 8 1 8J7R HIS B 9 ? UNP Q04637 ? ? 'expression tag' 731 9 1 8J7R HIS B 10 ? UNP Q04637 ? ? 'expression tag' 732 10 1 8J7R HIS B 11 ? UNP Q04637 ? ? 'expression tag' 733 11 1 8J7R ILE B 12 ? UNP Q04637 ? ? 'expression tag' 734 12 1 8J7R GLU B 13 ? UNP Q04637 ? ? 'expression tag' 735 13 1 8J7R GLY B 14 ? UNP Q04637 ? ? 'expression tag' 736 14 1 8J7R ARG B 15 ? UNP Q04637 ? ? 'expression tag' 737 15 1 8J7R HIS B 16 ? UNP Q04637 ? ? 'expression tag' 738 16 1 8J7R MET B 17 ? UNP Q04637 ? ? 'expression tag' 739 17 1 8J7R GLU B 18 ? UNP Q04637 ? ? 'expression tag' 740 18 1 8J7R LEU B 19 ? UNP Q04637 ? ? 'expression tag' 741 19 1 8J7R GLY B 20 ? UNP Q04637 ? ? 'expression tag' 742 20 1 8J7R THR B 21 ? UNP Q04637 ? ? 'expression tag' 743 21 1 8J7R LEU B 22 ? UNP Q04637 ? ? 'expression tag' 744 22 1 8J7R GLU B 23 ? UNP Q04637 ? ? 'expression tag' 745 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8J7R _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 199.643 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8J7R _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.70 _refine.ls_d_res_low 107.86 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 42391 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.25258 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.25258 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.366 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 15.910 _refine.overall_SU_ML 0.235 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 4033 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 0.011 4297 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.017 2940 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.111 1.759 6252 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 0.444 1.607 6905 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 4.309 5.000 237 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 2.339 5.000 18 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 22.210 10.000 428 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.057 0.200 779 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 0.020 3430 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.001 0.020 806 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 21.304 16.989 951 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 21.263 16.994 951 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 32.810 30.587 1187 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 32.806 30.586 1188 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 23.221 21.094 3346 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 23.217 21.096 3347 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 36.898 37.973 5066 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 49.777 241.18 19875 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 49.776 241.18 19876 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 3.700 _refine_ls_shell.d_res_low 3.796 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 3153 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 1.129 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.000 # _struct.entry_id 8J7R _struct.title 'Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8J7R _struct_keywords.text 'Translation initiation factors, Translation, RNA binding protein' _struct_keywords.pdbx_keywords TRANSLATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 32 ? LEU A 49 ? GLY B 754 LEU B 771 1 ? 18 HELX_P HELX_P2 AA2 MET A 53 ? GLN A 63 ? MET B 775 GLN B 785 1 ? 11 HELX_P HELX_P3 AA3 THR A 68 ? GLU A 86 ? THR B 790 GLU B 808 1 ? 19 HELX_P HELX_P4 AA4 PHE A 89 ? LEU A 100 ? PHE B 811 LEU B 822 1 ? 12 HELX_P HELX_P5 AA5 ASN A 116 ? GLU A 130 ? ASN B 838 GLU B 852 1 ? 15 HELX_P HELX_P6 AA6 LYS A 131 ? ALA A 149 ? LYS B 853 ALA B 871 1 ? 19 HELX_P HELX_P7 AA7 THR A 151 ? LEU A 186 ? THR B 873 LEU B 908 1 ? 36 HELX_P HELX_P8 AA8 THR A 190 ? ASN A 204 ? THR B 912 ASN B 926 1 ? 15 HELX_P HELX_P9 AA9 ASP A 206 ? ASP A 225 ? ASP B 928 ASP B 947 1 ? 20 HELX_P HELX_P10 AB1 PHE A 226 ? LYS A 228 ? PHE B 948 LYS B 950 5 ? 3 HELX_P HELX_P11 AB2 ALA A 229 ? LYS A 247 ? ALA B 951 LYS B 969 1 ? 19 HELX_P HELX_P12 AB3 SER A 250 ? SER A 266 ? SER B 972 SER B 988 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 106 N3 ? ? C G 682 C C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 106 O2 ? ? C G 682 C C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 106 N4 ? ? C G 682 C C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 105 N3 ? ? C G 683 C C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 105 O2 ? ? C G 683 C C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 105 N4 ? ? C G 683 C C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 104 N1 ? ? C C 684 C G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 104 O6 ? ? C C 684 C G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 104 N2 ? ? C C 684 C G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B U 6 N3 ? ? ? 1_555 B G 103 O6 ? ? C U 685 C G 782 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? B U 6 O2 ? ? ? 1_555 B G 103 N1 ? ? C U 685 C G 782 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? B G 7 N2 ? ? ? 1_555 B A 102 N7 ? ? C G 686 C A 781 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? B G 7 N3 ? ? ? 1_555 B A 102 N6 ? ? C G 686 C A 781 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 101 O2 ? ? C A 687 C U 780 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog15 hydrog ? ? B A 8 N7 ? ? ? 1_555 B U 101 N3 ? ? C A 687 C U 780 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? B A 9 N3 ? ? ? 1_555 B C 97 N4 ? ? C A 688 C C 776 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog17 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 100 N3 ? ? C G 689 C C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 100 O2 ? ? C G 689 C C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 100 N4 ? ? C G 689 C C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 11 N1 ? ? ? 1_555 B U 99 O2 ? ? C G 690 C U 778 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? B G 11 O6 ? ? ? 1_555 B U 99 N3 ? ? C G 690 C U 778 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? B A 12 N6 ? ? ? 1_555 B C 97 N3 ? ? C A 691 C C 776 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog23 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 95 N7 ? ? C U 692 C A 774 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 95 N6 ? ? C U 692 C A 774 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? B G 14 N1 ? ? ? 1_555 B A 94 N3 ? ? C G 693 C A 773 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog26 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 51 N1 ? ? C C 694 C G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 51 O6 ? ? C C 694 C G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 51 N2 ? ? C C 694 C G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 50 N1 ? ? C C 695 C G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 50 O6 ? ? C C 695 C G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 50 N2 ? ? C C 695 C G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 17 N3 ? ? ? 1_555 B G 49 N1 ? ? C C 696 C G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 49 O6 ? ? C C 696 C G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 17 O2 ? ? ? 1_555 B G 49 N2 ? ? C C 696 C G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 48 N3 ? ? C A 697 C U 727 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 48 O4 ? ? C A 697 C U 727 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 19 N1 ? ? ? 1_555 B C 47 N3 ? ? C G 698 C C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 19 N2 ? ? ? 1_555 B C 47 O2 ? ? C G 698 C C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 19 O6 ? ? ? 1_555 B C 47 N4 ? ? C G 698 C C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 20 N1 ? ? ? 1_555 B U 46 N3 ? ? C A 699 C U 725 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B A 20 N6 ? ? ? 1_555 B U 46 O4 ? ? C A 699 C U 725 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B A 21 N6 ? ? ? 1_555 B G 44 N3 ? ? C A 700 C G 723 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? B A 21 N7 ? ? ? 1_555 B G 44 N2 ? ? C A 700 C G 723 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? B G 22 N1 ? ? ? 1_555 B U 43 O2 ? ? C G 701 C U 722 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? B G 22 O6 ? ? ? 1_555 B U 43 N3 ? ? C G 701 C U 722 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 42 N3 ? ? C G 702 C C 721 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 42 O2 ? ? C G 702 C C 721 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 42 N4 ? ? C G 702 C C 721 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 23 N1 ? ? ? 1_555 B U 43 O2 ? ? C G 702 C U 722 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? B G 23 O6 ? ? ? 1_555 B U 43 N3 ? ? C G 702 C U 722 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? B U 24 N3 ? ? ? 1_555 B U 41 O4 ? ? C U 703 C U 720 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog52 hydrog ? ? B U 24 O2 ? ? ? 1_555 B U 41 N3 ? ? C U 703 C U 720 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog53 hydrog ? ? B C 26 N4 ? ? ? 1_555 B A 40 N1 ? ? C C 705 C A 719 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog54 hydrog ? ? B C 27 N3 ? ? ? 1_555 B G 39 N1 ? ? C C 706 C G 718 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 27 N4 ? ? ? 1_555 B G 39 O6 ? ? C C 706 C G 718 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 27 O2 ? ? ? 1_555 B G 39 N2 ? ? C C 706 C G 718 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 28 N3 ? ? ? 1_555 B G 38 N1 ? ? C C 707 C G 717 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 28 N4 ? ? ? 1_555 B G 38 O6 ? ? C C 707 C G 717 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 28 O2 ? ? ? 1_555 B G 38 N2 ? ? C C 707 C G 717 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 29 N3 ? ? ? 1_555 B G 37 N1 ? ? C C 708 C G 716 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 29 N4 ? ? ? 1_555 B G 37 O6 ? ? C C 708 C G 716 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 29 O2 ? ? ? 1_555 B G 37 N2 ? ? C C 708 C G 716 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B A 30 N1 ? ? ? 1_555 B U 36 N3 ? ? C A 709 C U 715 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 30 N6 ? ? ? 1_555 B U 36 O4 ? ? C A 709 C U 715 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B U 31 N3 ? ? ? 1_555 B A 35 N1 ? ? C U 710 C A 714 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B U 31 O4 ? ? ? 1_555 B A 35 N6 ? ? C U 710 C A 714 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 50 N2 ? ? ? 1_555 B A 92 N3 ? ? C G 729 C A 771 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog68 hydrog ? ? B G 52 N1 ? ? ? 1_555 B A 95 N1 ? ? C G 731 C A 774 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog69 hydrog ? ? B G 52 O6 ? ? ? 1_555 B A 95 N6 ? ? C G 731 C A 774 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog70 hydrog ? ? B C 53 N3 ? ? ? 1_555 B G 88 N1 ? ? C C 732 C G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 53 N4 ? ? ? 1_555 B G 88 O6 ? ? C C 732 C G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 53 O2 ? ? ? 1_555 B G 88 N2 ? ? C C 732 C G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 54 N3 ? ? ? 1_555 B G 87 N1 ? ? C C 733 C G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 54 N4 ? ? ? 1_555 B G 87 O6 ? ? C C 733 C G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 54 O2 ? ? ? 1_555 B G 87 N2 ? ? C C 733 C G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 55 N3 ? ? ? 1_555 B A 86 N1 ? ? C U 734 C A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B U 55 O4 ? ? ? 1_555 B A 86 N6 ? ? C U 734 C A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 56 N3 ? ? ? 1_555 B G 85 N1 ? ? C C 735 C G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 56 N4 ? ? ? 1_555 B G 85 O6 ? ? C C 735 C G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 56 O2 ? ? ? 1_555 B G 85 N2 ? ? C C 735 C G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 57 N1 ? ? ? 1_555 B C 84 N3 ? ? C G 736 C C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 57 N2 ? ? ? 1_555 B C 84 O2 ? ? C G 736 C C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 57 O6 ? ? ? 1_555 B C 84 N4 ? ? C G 736 C C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 58 N1 ? ? ? 1_555 B U 83 O2 ? ? C G 737 C U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog85 hydrog ? ? B G 58 O6 ? ? ? 1_555 B U 83 N3 ? ? C G 737 C U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog86 hydrog ? ? B U 59 N3 ? ? ? 1_555 B A 81 N1 ? ? C U 738 C A 760 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 59 O4 ? ? ? 1_555 B A 81 N6 ? ? C U 738 C A 760 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 60 N1 ? ? ? 1_555 B U 78 O2 ? ? C G 739 C U 757 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? B G 60 O6 ? ? ? 1_555 B U 78 N3 ? ? C G 739 C U 757 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? B C 61 N3 ? ? ? 1_555 B G 77 N1 ? ? C C 740 C G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B C 61 N4 ? ? ? 1_555 B G 77 O6 ? ? C C 740 C G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 61 O2 ? ? ? 1_555 B G 77 N2 ? ? C C 740 C G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B A 62 N1 ? ? ? 1_555 B U 76 N3 ? ? C A 741 C U 755 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 62 N6 ? ? ? 1_555 B U 76 O4 ? ? C A 741 C U 755 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 63 N3 ? ? ? 1_555 B G 75 N1 ? ? C C 742 C G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 63 N4 ? ? ? 1_555 B G 75 O6 ? ? C C 742 C G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 63 O2 ? ? ? 1_555 B G 75 N2 ? ? C C 742 C G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B A 64 N1 ? ? ? 1_555 B U 74 N3 ? ? C A 743 C U 753 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B A 64 N6 ? ? ? 1_555 B U 74 O4 ? ? C A 743 C U 753 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 65 N3 ? ? ? 1_555 B A 73 N1 ? ? C U 744 C A 752 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B U 65 O4 ? ? ? 1_555 B A 73 N6 ? ? C U 744 C A 752 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 66 N1 ? ? ? 1_555 B C 72 N3 ? ? C G 745 C C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B G 66 N2 ? ? ? 1_555 B C 72 O2 ? ? C G 745 C C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 66 O6 ? ? ? 1_555 B C 72 N4 ? ? C G 745 C C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 89 N3 ? ? ? 1_555 B A 93 N7 ? ? C U 768 C A 772 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog106 hydrog ? ? B U 89 O2 ? ? ? 1_555 B A 93 N6 ? ? C U 768 C A 772 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 105 ? PRO A 106 ? VAL B 827 PRO B 828 AA1 2 THR A 114 ? VAL A 115 ? THR B 836 VAL B 837 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 105 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id B _pdbx_struct_sheet_hbond.range_1_auth_seq_id 827 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 115 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 837 # _atom_sites.entry_id 8J7R _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 723 ? ? ? B . n A 1 2 ASN 2 724 ? ? ? B . n A 1 3 HIS 3 725 ? ? ? B . n A 1 4 LYS 4 726 ? ? ? B . n A 1 5 VAL 5 727 ? ? ? B . n A 1 6 HIS 6 728 ? ? ? B . n A 1 7 HIS 7 729 ? ? ? B . n A 1 8 HIS 8 730 ? ? ? B . n A 1 9 HIS 9 731 ? ? ? B . n A 1 10 HIS 10 732 ? ? ? B . n A 1 11 HIS 11 733 ? ? ? B . n A 1 12 ILE 12 734 ? ? ? B . n A 1 13 GLU 13 735 ? ? ? B . n A 1 14 GLY 14 736 ? ? ? B . n A 1 15 ARG 15 737 ? ? ? B . n A 1 16 HIS 16 738 ? ? ? B . n A 1 17 MET 17 739 ? ? ? B . n A 1 18 GLU 18 740 ? ? ? B . n A 1 19 LEU 19 741 ? ? ? B . n A 1 20 GLY 20 742 ? ? ? B . n A 1 21 THR 21 743 ? ? ? B . n A 1 22 LEU 22 744 ? ? ? B . n A 1 23 GLU 23 745 ? ? ? B . n A 1 24 ASP 24 746 ? ? ? B . n A 1 25 ARG 25 747 ? ? ? B . n A 1 26 GLY 26 748 ? ? ? B . n A 1 27 GLU 27 749 ? ? ? B . n A 1 28 GLU 28 750 ? ? ? B . n A 1 29 ASP 29 751 ? ? ? B . n A 1 30 ALA 30 752 ? ? ? B . n A 1 31 ASP 31 753 ? ? ? B . n A 1 32 GLY 32 754 754 GLY GLY B . n A 1 33 SER 33 755 755 SER SER B . n A 1 34 LYS 34 756 756 LYS LYS B . n A 1 35 THR 35 757 757 THR THR B . n A 1 36 GLN 36 758 758 GLN GLN B . n A 1 37 ASP 37 759 759 ASP ASP B . n A 1 38 LEU 38 760 760 LEU LEU B . n A 1 39 PHE 39 761 761 PHE PHE B . n A 1 40 ARG 40 762 762 ARG ARG B . n A 1 41 ARG 41 763 763 ARG ARG B . n A 1 42 VAL 42 764 764 VAL VAL B . n A 1 43 ARG 43 765 765 ARG ARG B . n A 1 44 SER 44 766 766 SER SER B . n A 1 45 ILE 45 767 767 ILE ILE B . n A 1 46 LEU 46 768 768 LEU LEU B . n A 1 47 ASN 47 769 769 ASN ASN B . n A 1 48 LYS 48 770 770 LYS LYS B . n A 1 49 LEU 49 771 771 LEU LEU B . n A 1 50 THR 50 772 772 THR THR B . n A 1 51 PRO 51 773 773 PRO PRO B . n A 1 52 GLN 52 774 774 GLN GLN B . n A 1 53 MET 53 775 775 MET MET B . n A 1 54 PHE 54 776 776 PHE PHE B . n A 1 55 GLN 55 777 777 GLN GLN B . n A 1 56 GLN 56 778 778 GLN GLN B . n A 1 57 LEU 57 779 779 LEU LEU B . n A 1 58 MET 58 780 780 MET MET B . n A 1 59 LYS 59 781 781 LYS LYS B . n A 1 60 GLN 60 782 782 GLN GLN B . n A 1 61 VAL 61 783 783 VAL VAL B . n A 1 62 THR 62 784 784 THR THR B . n A 1 63 GLN 63 785 785 GLN GLN B . n A 1 64 LEU 64 786 786 LEU LEU B . n A 1 65 ALA 65 787 787 ALA ALA B . n A 1 66 ILE 66 788 788 ILE ILE B . n A 1 67 ASP 67 789 789 ASP ASP B . n A 1 68 THR 68 790 790 THR THR B . n A 1 69 GLU 69 791 791 GLU GLU B . n A 1 70 GLU 70 792 792 GLU GLU B . n A 1 71 ARG 71 793 793 ARG ARG B . n A 1 72 LEU 72 794 794 LEU LEU B . n A 1 73 LYS 73 795 795 LYS LYS B . n A 1 74 GLY 74 796 796 GLY GLY B . n A 1 75 VAL 75 797 797 VAL VAL B . n A 1 76 ILE 76 798 798 ILE ILE B . n A 1 77 ASP 77 799 799 ASP ASP B . n A 1 78 LEU 78 800 800 LEU LEU B . n A 1 79 ILE 79 801 801 ILE ILE B . n A 1 80 PHE 80 802 802 PHE PHE B . n A 1 81 GLU 81 803 803 GLU GLU B . n A 1 82 LYS 82 804 804 LYS LYS B . n A 1 83 ALA 83 805 805 ALA ALA B . n A 1 84 ILE 84 806 806 ILE ILE B . n A 1 85 SER 85 807 807 SER SER B . n A 1 86 GLU 86 808 808 GLU GLU B . n A 1 87 PRO 87 809 809 PRO PRO B . n A 1 88 ASN 88 810 810 ASN ASN B . n A 1 89 PHE 89 811 811 PHE PHE B . n A 1 90 SER 90 812 812 SER SER B . n A 1 91 VAL 91 813 813 VAL VAL B . n A 1 92 ALA 92 814 814 ALA ALA B . n A 1 93 TYR 93 815 815 TYR TYR B . n A 1 94 ALA 94 816 816 ALA ALA B . n A 1 95 ASN 95 817 817 ASN ASN B . n A 1 96 MET 96 818 818 MET MET B . n A 1 97 CYS 97 819 819 CYS CYS B . n A 1 98 ARG 98 820 820 ARG ARG B . n A 1 99 CYS 99 821 821 CYS CYS B . n A 1 100 LEU 100 822 822 LEU LEU B . n A 1 101 MET 101 823 823 MET MET B . n A 1 102 ALA 102 824 824 ALA ALA B . n A 1 103 LEU 103 825 825 LEU LEU B . n A 1 104 LYS 104 826 826 LYS LYS B . n A 1 105 VAL 105 827 827 VAL VAL B . n A 1 106 PRO 106 828 828 PRO PRO B . n A 1 107 THR 107 829 829 THR THR B . n A 1 108 THR 108 830 830 THR THR B . n A 1 109 GLU 109 831 831 GLU GLU B . n A 1 110 LYS 110 832 832 LYS LYS B . n A 1 111 PRO 111 833 833 PRO PRO B . n A 1 112 THR 112 834 834 THR THR B . n A 1 113 VAL 113 835 835 VAL VAL B . n A 1 114 THR 114 836 836 THR THR B . n A 1 115 VAL 115 837 837 VAL VAL B . n A 1 116 ASN 116 838 838 ASN ASN B . n A 1 117 PHE 117 839 839 PHE PHE B . n A 1 118 ARG 118 840 840 ARG ARG B . n A 1 119 LYS 119 841 841 LYS LYS B . n A 1 120 LEU 120 842 842 LEU LEU B . n A 1 121 LEU 121 843 843 LEU LEU B . n A 1 122 LEU 122 844 844 LEU LEU B . n A 1 123 ASN 123 845 845 ASN ASN B . n A 1 124 ARG 124 846 846 ARG ARG B . n A 1 125 CYS 125 847 847 CYS CYS B . n A 1 126 GLN 126 848 848 GLN GLN B . n A 1 127 LYS 127 849 849 LYS LYS B . n A 1 128 GLU 128 850 850 GLU GLU B . n A 1 129 PHE 129 851 851 PHE PHE B . n A 1 130 GLU 130 852 852 GLU GLU B . n A 1 131 LYS 131 853 853 LYS LYS B . n A 1 132 ASP 132 854 854 ASP ASP B . n A 1 133 LYS 133 855 855 LYS LYS B . n A 1 134 ASP 134 856 856 ASP ASP B . n A 1 135 ASP 135 857 857 ASP ASP B . n A 1 136 ASP 136 858 858 ASP ASP B . n A 1 137 GLU 137 859 859 GLU GLU B . n A 1 138 VAL 138 860 860 VAL VAL B . n A 1 139 PHE 139 861 861 PHE PHE B . n A 1 140 GLU 140 862 862 GLU GLU B . n A 1 141 LYS 141 863 863 LYS LYS B . n A 1 142 LYS 142 864 864 LYS LYS B . n A 1 143 GLN 143 865 865 GLN GLN B . n A 1 144 LYS 144 866 866 LYS LYS B . n A 1 145 GLU 145 867 867 GLU GLU B . n A 1 146 MET 146 868 868 MET MET B . n A 1 147 ASP 147 869 869 ASP ASP B . n A 1 148 GLU 148 870 870 GLU GLU B . n A 1 149 ALA 149 871 871 ALA ALA B . n A 1 150 ALA 150 872 872 ALA ALA B . n A 1 151 THR 151 873 873 THR THR B . n A 1 152 ALA 152 874 874 ALA ALA B . n A 1 153 GLU 153 875 875 GLU GLU B . n A 1 154 GLU 154 876 876 GLU GLU B . n A 1 155 ARG 155 877 877 ARG ARG B . n A 1 156 GLY 156 878 878 GLY GLY B . n A 1 157 ARG 157 879 879 ARG ARG B . n A 1 158 LEU 158 880 880 LEU LEU B . n A 1 159 LYS 159 881 881 LYS LYS B . n A 1 160 GLU 160 882 882 GLU GLU B . n A 1 161 GLU 161 883 883 GLU GLU B . n A 1 162 LEU 162 884 884 LEU LEU B . n A 1 163 GLU 163 885 885 GLU GLU B . n A 1 164 GLU 164 886 886 GLU GLU B . n A 1 165 ALA 165 887 887 ALA ALA B . n A 1 166 ARG 166 888 888 ARG ARG B . n A 1 167 ASP 167 889 889 ASP ASP B . n A 1 168 ILE 168 890 890 ILE ILE B . n A 1 169 ALA 169 891 891 ALA ALA B . n A 1 170 ARG 170 892 892 ARG ARG B . n A 1 171 ARG 171 893 893 ARG ARG B . n A 1 172 ARG 172 894 894 ARG ARG B . n A 1 173 SER 173 895 895 SER SER B . n A 1 174 LEU 174 896 896 LEU LEU B . n A 1 175 GLY 175 897 897 GLY GLY B . n A 1 176 ASN 176 898 898 ASN ASN B . n A 1 177 ILE 177 899 899 ILE ILE B . n A 1 178 LYS 178 900 900 LYS LYS B . n A 1 179 PHE 179 901 901 PHE PHE B . n A 1 180 ILE 180 902 902 ILE ILE B . n A 1 181 GLY 181 903 903 GLY GLY B . n A 1 182 GLU 182 904 904 GLU GLU B . n A 1 183 LEU 183 905 905 LEU LEU B . n A 1 184 PHE 184 906 906 PHE PHE B . n A 1 185 LYS 185 907 907 LYS LYS B . n A 1 186 LEU 186 908 908 LEU LEU B . n A 1 187 LYS 187 909 909 LYS LYS B . n A 1 188 MET 188 910 910 MET MET B . n A 1 189 LEU 189 911 911 LEU LEU B . n A 1 190 THR 190 912 912 THR THR B . n A 1 191 GLU 191 913 913 GLU GLU B . n A 1 192 ALA 192 914 914 ALA ALA B . n A 1 193 ILE 193 915 915 ILE ILE B . n A 1 194 MET 194 916 916 MET MET B . n A 1 195 HIS 195 917 917 HIS HIS B . n A 1 196 ASP 196 918 918 ASP ASP B . n A 1 197 CYS 197 919 919 CYS CYS B . n A 1 198 VAL 198 920 920 VAL VAL B . n A 1 199 VAL 199 921 921 VAL VAL B . n A 1 200 LYS 200 922 922 LYS LYS B . n A 1 201 LEU 201 923 923 LEU LEU B . n A 1 202 LEU 202 924 924 LEU LEU B . n A 1 203 LYS 203 925 925 LYS LYS B . n A 1 204 ASN 204 926 926 ASN ASN B . n A 1 205 HIS 205 927 927 HIS HIS B . n A 1 206 ASP 206 928 928 ASP ASP B . n A 1 207 GLU 207 929 929 GLU GLU B . n A 1 208 GLU 208 930 930 GLU GLU B . n A 1 209 SER 209 931 931 SER SER B . n A 1 210 LEU 210 932 932 LEU LEU B . n A 1 211 GLU 211 933 933 GLU GLU B . n A 1 212 CYS 212 934 934 CYS CYS B . n A 1 213 LEU 213 935 935 LEU LEU B . n A 1 214 CYS 214 936 936 CYS CYS B . n A 1 215 ARG 215 937 937 ARG ARG B . n A 1 216 LEU 216 938 938 LEU LEU B . n A 1 217 LEU 217 939 939 LEU LEU B . n A 1 218 THR 218 940 940 THR THR B . n A 1 219 THR 219 941 941 THR THR B . n A 1 220 ILE 220 942 942 ILE ILE B . n A 1 221 GLY 221 943 943 GLY GLY B . n A 1 222 LYS 222 944 944 LYS LYS B . n A 1 223 ASP 223 945 945 ASP ASP B . n A 1 224 LEU 224 946 946 LEU LEU B . n A 1 225 ASP 225 947 947 ASP ASP B . n A 1 226 PHE 226 948 948 PHE PHE B . n A 1 227 GLU 227 949 949 GLU GLU B . n A 1 228 LYS 228 950 950 LYS LYS B . n A 1 229 ALA 229 951 951 ALA ALA B . n A 1 230 LYS 230 952 952 LYS LYS B . n A 1 231 PRO 231 953 953 PRO PRO B . n A 1 232 ARG 232 954 954 ARG ARG B . n A 1 233 MET 233 955 955 MET MET B . n A 1 234 ASP 234 956 956 ASP ASP B . n A 1 235 GLN 235 957 957 GLN GLN B . n A 1 236 TYR 236 958 958 TYR TYR B . n A 1 237 PHE 237 959 959 PHE PHE B . n A 1 238 ASN 238 960 960 ASN ASN B . n A 1 239 GLN 239 961 961 GLN GLN B . n A 1 240 MET 240 962 962 MET MET B . n A 1 241 GLU 241 963 963 GLU GLU B . n A 1 242 LYS 242 964 964 LYS LYS B . n A 1 243 ILE 243 965 965 ILE ILE B . n A 1 244 ILE 244 966 966 ILE ILE B . n A 1 245 LYS 245 967 967 LYS LYS B . n A 1 246 GLU 246 968 968 GLU GLU B . n A 1 247 LYS 247 969 969 LYS LYS B . n A 1 248 LYS 248 970 970 LYS LYS B . n A 1 249 THR 249 971 971 THR THR B . n A 1 250 SER 250 972 972 SER SER B . n A 1 251 SER 251 973 973 SER SER B . n A 1 252 ARG 252 974 974 ARG ARG B . n A 1 253 ILE 253 975 975 ILE ILE B . n A 1 254 ARG 254 976 976 ARG ARG B . n A 1 255 PHE 255 977 977 PHE PHE B . n A 1 256 MET 256 978 978 MET MET B . n A 1 257 LEU 257 979 979 LEU LEU B . n A 1 258 GLN 258 980 980 GLN GLN B . n A 1 259 ASP 259 981 981 ASP ASP B . n A 1 260 VAL 260 982 982 VAL VAL B . n A 1 261 LEU 261 983 983 LEU LEU B . n A 1 262 ASP 262 984 984 ASP ASP B . n A 1 263 LEU 263 985 985 LEU LEU B . n A 1 264 ARG 264 986 986 ARG ARG B . n A 1 265 GLY 265 987 987 GLY GLY B . n A 1 266 SER 266 988 988 SER SER B . n A 1 267 ASN 267 989 989 ASN ASN B . n A 1 268 TRP 268 990 990 TRP TRP B . n A 1 269 VAL 269 991 991 VAL VAL B . n A 1 270 PRO 270 992 ? ? ? B . n B 2 1 G 1 680 ? ? ? C . n B 2 2 G 2 681 ? ? ? C . n B 2 3 G 3 682 682 G G C . n B 2 4 G 4 683 683 G G C . n B 2 5 C 5 684 684 C C C . n B 2 6 U 6 685 685 U U C . n B 2 7 G 7 686 686 G G C . n B 2 8 A 8 687 687 A A C . n B 2 9 A 9 688 688 A A C . n B 2 10 G 10 689 689 G G C . n B 2 11 G 11 690 690 G G C . n B 2 12 A 12 691 691 A A C . n B 2 13 U 13 692 692 U U C . n B 2 14 G 14 693 693 G G C . n B 2 15 C 15 694 694 C C C . n B 2 16 C 16 695 695 C C C . n B 2 17 C 17 696 696 C C C . n B 2 18 A 18 697 697 A A C . n B 2 19 G 19 698 698 G G C . n B 2 20 A 20 699 699 A A C . n B 2 21 A 21 700 700 A A C . n B 2 22 G 22 701 701 G G C . n B 2 23 G 23 702 702 G G C . n B 2 24 U 24 703 703 U U C . n B 2 25 A 25 704 704 A A C . n B 2 26 C 26 705 705 C C C . n B 2 27 C 27 706 706 C C C . n B 2 28 C 28 707 707 C C C . n B 2 29 C 29 708 708 C C C . n B 2 30 A 30 709 709 A A C . n B 2 31 U 31 710 710 U U C . n B 2 32 U 32 711 711 U U C . n B 2 33 G 33 712 712 G G C . n B 2 34 U 34 713 713 U U C . n B 2 35 A 35 714 714 A A C . n B 2 36 U 36 715 715 U U C . n B 2 37 G 37 716 716 G G C . n B 2 38 G 38 717 717 G G C . n B 2 39 G 39 718 718 G G C . n B 2 40 A 40 719 719 A A C . n B 2 41 U 41 720 720 U U C . n B 2 42 C 42 721 721 C C C . n B 2 43 U 43 722 722 U U C . n B 2 44 G 44 723 723 G G C . n B 2 45 A 45 724 724 A A C . n B 2 46 U 46 725 725 U U C . n B 2 47 C 47 726 726 C C C . n B 2 48 U 48 727 727 U U C . n B 2 49 G 49 728 728 G G C . n B 2 50 G 50 729 729 G G C . n B 2 51 G 51 730 730 G G C . n B 2 52 G 52 731 731 G G C . n B 2 53 C 53 732 732 C C C . n B 2 54 C 54 733 733 C C C . n B 2 55 U 55 734 734 U U C . n B 2 56 C 56 735 735 C C C . n B 2 57 G 57 736 736 G G C . n B 2 58 G 58 737 737 G G C . n B 2 59 U 59 738 738 U U C . n B 2 60 G 60 739 739 G G C . n B 2 61 C 61 740 740 C C C . n B 2 62 A 62 741 741 A A C . n B 2 63 C 63 742 742 C C C . n B 2 64 A 64 743 743 A A C . n B 2 65 U 65 744 744 U U C . n B 2 66 G 66 745 745 G G C . n B 2 67 C 67 746 ? ? ? C . n B 2 68 U 68 747 ? ? ? C . n B 2 69 U 69 748 ? ? ? C . n B 2 70 U 70 749 ? ? ? C . n B 2 71 A 71 750 ? ? ? C . n B 2 72 C 72 751 751 C C C . n B 2 73 A 73 752 752 A A C . n B 2 74 U 74 753 753 U U C . n B 2 75 G 75 754 754 G G C . n B 2 76 U 76 755 755 U U C . n B 2 77 G 77 756 756 G G C . n B 2 78 U 78 757 757 U U C . n B 2 79 U 79 758 ? ? ? C . n B 2 80 U 80 759 ? ? ? C . n B 2 81 A 81 760 760 A A C . n B 2 82 G 82 761 761 G G C . n B 2 83 U 83 762 762 U U C . n B 2 84 C 84 763 763 C C C . n B 2 85 G 85 764 764 G G C . n B 2 86 A 86 765 765 A A C . n B 2 87 G 87 766 766 G G C . n B 2 88 G 88 767 767 G G C . n B 2 89 U 89 768 768 U U C . n B 2 90 U 90 769 769 U U C . n B 2 91 A 91 770 770 A A C . n B 2 92 A 92 771 771 A A C . n B 2 93 A 93 772 772 A A C . n B 2 94 A 94 773 773 A A C . n B 2 95 A 95 774 774 A A C . n B 2 96 A 96 775 775 A A C . n B 2 97 C 97 776 776 C C C . n B 2 98 G 98 777 777 G G C . n B 2 99 U 99 778 778 U U C . n B 2 100 C 100 779 779 C C C . n B 2 101 U 101 780 780 U U C . n B 2 102 A 102 781 781 A A C . n B 2 103 G 103 782 782 G G C . n B 2 104 G 104 783 783 G G C . n B 2 105 C 105 784 784 C C C . n B 2 106 C 106 785 785 C C C . n B 2 107 C 107 786 ? ? ? C . n B 2 108 C 108 787 ? ? ? C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email yoshi.cesp@tmd.ac.jp _pdbx_contact_author.name_first Fujiyoshi _pdbx_contact_author.name_last Yoshinori _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8070-1493 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 801 801 MG MG C . D 3 MG 1 802 802 MG MG C . E 3 MG 1 803 803 MG MG C . F 4 HOH 1 901 901 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -35 ? 1 'SSA (A^2)' 28110 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-02 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8J7R _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8J7R _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8J7R _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.70 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 255256 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ternary complex of the J-K-St region of EMCV IRES with eIF4A and eIF4G-HEAT1' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2 # _em_image_scans.entry_id 8J7R _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image 1-40 # _em_imaging.entry_id 8J7R _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'JEOL CRYO ARM 300' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ;The microscope model is the JEOL's "JEM-Z320FHC", the custom-built model equipped with a helium-cooled specimen stage. ; _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 3.4 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8J7R _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8J7R _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8J7R _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 723 ? A MET 1 2 1 Y 1 B ASN 724 ? A ASN 2 3 1 Y 1 B HIS 725 ? A HIS 3 4 1 Y 1 B LYS 726 ? A LYS 4 5 1 Y 1 B VAL 727 ? A VAL 5 6 1 Y 1 B HIS 728 ? A HIS 6 7 1 Y 1 B HIS 729 ? A HIS 7 8 1 Y 1 B HIS 730 ? A HIS 8 9 1 Y 1 B HIS 731 ? A HIS 9 10 1 Y 1 B HIS 732 ? A HIS 10 11 1 Y 1 B HIS 733 ? A HIS 11 12 1 Y 1 B ILE 734 ? A ILE 12 13 1 Y 1 B GLU 735 ? A GLU 13 14 1 Y 1 B GLY 736 ? A GLY 14 15 1 Y 1 B ARG 737 ? A ARG 15 16 1 Y 1 B HIS 738 ? A HIS 16 17 1 Y 1 B MET 739 ? A MET 17 18 1 Y 1 B GLU 740 ? A GLU 18 19 1 Y 1 B LEU 741 ? A LEU 19 20 1 Y 1 B GLY 742 ? A GLY 20 21 1 Y 1 B THR 743 ? A THR 21 22 1 Y 1 B LEU 744 ? A LEU 22 23 1 Y 1 B GLU 745 ? A GLU 23 24 1 Y 1 B ASP 746 ? A ASP 24 25 1 Y 1 B ARG 747 ? A ARG 25 26 1 Y 1 B GLY 748 ? A GLY 26 27 1 Y 1 B GLU 749 ? A GLU 27 28 1 Y 1 B GLU 750 ? A GLU 28 29 1 Y 1 B ASP 751 ? A ASP 29 30 1 Y 1 B ALA 752 ? A ALA 30 31 1 Y 1 B ASP 753 ? A ASP 31 32 1 Y 1 B PRO 992 ? A PRO 270 33 1 Y 1 C G 680 ? B G 1 34 1 Y 1 C G 681 ? B G 2 35 1 Y 1 C C 746 ? B C 67 36 1 Y 1 C U 747 ? B U 68 37 1 Y 1 C U 748 ? B U 69 38 1 Y 1 C U 749 ? B U 70 39 1 Y 1 C A 750 ? B A 71 40 1 Y 1 C U 758 ? B U 79 41 1 Y 1 C U 759 ? B U 80 42 1 Y 1 C C 786 ? B C 107 43 1 Y 1 C C 787 ? B C 108 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 MG MG MG N N 360 PHE N N N N 361 PHE CA C N S 362 PHE C C N N 363 PHE O O N N 364 PHE CB C N N 365 PHE CG C Y N 366 PHE CD1 C Y N 367 PHE CD2 C Y N 368 PHE CE1 C Y N 369 PHE CE2 C Y N 370 PHE CZ C Y N 371 PHE OXT O N N 372 PHE H H N N 373 PHE H2 H N N 374 PHE HA H N N 375 PHE HB2 H N N 376 PHE HB3 H N N 377 PHE HD1 H N N 378 PHE HD2 H N N 379 PHE HE1 H N N 380 PHE HE2 H N N 381 PHE HZ H N N 382 PHE HXT H N N 383 PRO N N N N 384 PRO CA C N S 385 PRO C C N N 386 PRO O O N N 387 PRO CB C N N 388 PRO CG C N N 389 PRO CD C N N 390 PRO OXT O N N 391 PRO H H N N 392 PRO HA H N N 393 PRO HB2 H N N 394 PRO HB3 H N N 395 PRO HG2 H N N 396 PRO HG3 H N N 397 PRO HD2 H N N 398 PRO HD3 H N N 399 PRO HXT H N N 400 SER N N N N 401 SER CA C N S 402 SER C C N N 403 SER O O N N 404 SER CB C N N 405 SER OG O N N 406 SER OXT O N N 407 SER H H N N 408 SER H2 H N N 409 SER HA H N N 410 SER HB2 H N N 411 SER HB3 H N N 412 SER HG H N N 413 SER HXT H N N 414 THR N N N N 415 THR CA C N S 416 THR C C N N 417 THR O O N N 418 THR CB C N R 419 THR OG1 O N N 420 THR CG2 C N N 421 THR OXT O N N 422 THR H H N N 423 THR H2 H N N 424 THR HA H N N 425 THR HB H N N 426 THR HG1 H N N 427 THR HG21 H N N 428 THR HG22 H N N 429 THR HG23 H N N 430 THR HXT H N N 431 TRP N N N N 432 TRP CA C N S 433 TRP C C N N 434 TRP O O N N 435 TRP CB C N N 436 TRP CG C Y N 437 TRP CD1 C Y N 438 TRP CD2 C Y N 439 TRP NE1 N Y N 440 TRP CE2 C Y N 441 TRP CE3 C Y N 442 TRP CZ2 C Y N 443 TRP CZ3 C Y N 444 TRP CH2 C Y N 445 TRP OXT O N N 446 TRP H H N N 447 TRP H2 H N N 448 TRP HA H N N 449 TRP HB2 H N N 450 TRP HB3 H N N 451 TRP HD1 H N N 452 TRP HE1 H N N 453 TRP HE3 H N N 454 TRP HZ2 H N N 455 TRP HZ3 H N N 456 TRP HH2 H N N 457 TRP HXT H N N 458 TYR N N N N 459 TYR CA C N S 460 TYR C C N N 461 TYR O O N N 462 TYR CB C N N 463 TYR CG C Y N 464 TYR CD1 C Y N 465 TYR CD2 C Y N 466 TYR CE1 C Y N 467 TYR CE2 C Y N 468 TYR CZ C Y N 469 TYR OH O N N 470 TYR OXT O N N 471 TYR H H N N 472 TYR H2 H N N 473 TYR HA H N N 474 TYR HB2 H N N 475 TYR HB3 H N N 476 TYR HD1 H N N 477 TYR HD2 H N N 478 TYR HE1 H N N 479 TYR HE2 H N N 480 TYR HH H N N 481 TYR HXT H N N 482 U OP3 O N N 483 U P P N N 484 U OP1 O N N 485 U OP2 O N N 486 U "O5'" O N N 487 U "C5'" C N N 488 U "C4'" C N R 489 U "O4'" O N N 490 U "C3'" C N S 491 U "O3'" O N N 492 U "C2'" C N R 493 U "O2'" O N N 494 U "C1'" C N R 495 U N1 N N N 496 U C2 C N N 497 U O2 O N N 498 U N3 N N N 499 U C4 C N N 500 U O4 O N N 501 U C5 C N N 502 U C6 C N N 503 U HOP3 H N N 504 U HOP2 H N N 505 U "H5'" H N N 506 U "H5''" H N N 507 U "H4'" H N N 508 U "H3'" H N N 509 U "HO3'" H N N 510 U "H2'" H N N 511 U "HO2'" H N N 512 U "H1'" H N N 513 U H3 H N N 514 U H5 H N N 515 U H6 H N N 516 VAL N N N N 517 VAL CA C N S 518 VAL C C N N 519 VAL O O N N 520 VAL CB C N N 521 VAL CG1 C N N 522 VAL CG2 C N N 523 VAL OXT O N N 524 VAL H H N N 525 VAL H2 H N N 526 VAL HA H N N 527 VAL HB H N N 528 VAL HG11 H N N 529 VAL HG12 H N N 530 VAL HG13 H N N 531 VAL HG21 H N N 532 VAL HG22 H N N 533 VAL HG23 H N N 534 VAL HXT H N N 535 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TRP N CA sing N N 421 TRP N H sing N N 422 TRP N H2 sing N N 423 TRP CA C sing N N 424 TRP CA CB sing N N 425 TRP CA HA sing N N 426 TRP C O doub N N 427 TRP C OXT sing N N 428 TRP CB CG sing N N 429 TRP CB HB2 sing N N 430 TRP CB HB3 sing N N 431 TRP CG CD1 doub Y N 432 TRP CG CD2 sing Y N 433 TRP CD1 NE1 sing Y N 434 TRP CD1 HD1 sing N N 435 TRP CD2 CE2 doub Y N 436 TRP CD2 CE3 sing Y N 437 TRP NE1 CE2 sing Y N 438 TRP NE1 HE1 sing N N 439 TRP CE2 CZ2 sing Y N 440 TRP CE3 CZ3 doub Y N 441 TRP CE3 HE3 sing N N 442 TRP CZ2 CH2 doub Y N 443 TRP CZ2 HZ2 sing N N 444 TRP CZ3 CH2 sing Y N 445 TRP CZ3 HZ3 sing N N 446 TRP CH2 HH2 sing N N 447 TRP OXT HXT sing N N 448 TYR N CA sing N N 449 TYR N H sing N N 450 TYR N H2 sing N N 451 TYR CA C sing N N 452 TYR CA CB sing N N 453 TYR CA HA sing N N 454 TYR C O doub N N 455 TYR C OXT sing N N 456 TYR CB CG sing N N 457 TYR CB HB2 sing N N 458 TYR CB HB3 sing N N 459 TYR CG CD1 doub Y N 460 TYR CG CD2 sing Y N 461 TYR CD1 CE1 sing Y N 462 TYR CD1 HD1 sing N N 463 TYR CD2 CE2 doub Y N 464 TYR CD2 HD2 sing N N 465 TYR CE1 CZ doub Y N 466 TYR CE1 HE1 sing N N 467 TYR CE2 CZ sing Y N 468 TYR CE2 HE2 sing N N 469 TYR CZ OH sing N N 470 TYR OH HH sing N N 471 TYR OXT HXT sing N N 472 U OP3 P sing N N 473 U OP3 HOP3 sing N N 474 U P OP1 doub N N 475 U P OP2 sing N N 476 U P "O5'" sing N N 477 U OP2 HOP2 sing N N 478 U "O5'" "C5'" sing N N 479 U "C5'" "C4'" sing N N 480 U "C5'" "H5'" sing N N 481 U "C5'" "H5''" sing N N 482 U "C4'" "O4'" sing N N 483 U "C4'" "C3'" sing N N 484 U "C4'" "H4'" sing N N 485 U "O4'" "C1'" sing N N 486 U "C3'" "O3'" sing N N 487 U "C3'" "C2'" sing N N 488 U "C3'" "H3'" sing N N 489 U "O3'" "HO3'" sing N N 490 U "C2'" "O2'" sing N N 491 U "C2'" "C1'" sing N N 492 U "C2'" "H2'" sing N N 493 U "O2'" "HO2'" sing N N 494 U "C1'" N1 sing N N 495 U "C1'" "H1'" sing N N 496 U N1 C2 sing N N 497 U N1 C6 sing N N 498 U C2 O2 doub N N 499 U C2 N3 sing N N 500 U N3 C4 sing N N 501 U N3 H3 sing N N 502 U C4 O4 doub N N 503 U C4 C5 sing N N 504 U C5 C6 doub N N 505 U C5 H5 sing N N 506 U C6 H6 sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM C8H18N2O4S 1 HEPES 1 150 mM KCl 2 'potassium chloride' 1 2 mM MgCl2 3 'magnesium chloride' 1 0.1 mM C10H16N5O13P3 4 ATP 1 1 mM C4H10O2S2 5 DTT # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_molwt.entity_assembly_id _em_entity_assembly_molwt.experimental_flag _em_entity_assembly_molwt.id _em_entity_assembly_molwt.units _em_entity_assembly_molwt.value 1 NO 1 MEGADALTONS 0.1 1 NO 2 ? ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 8 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 71.1 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 6194 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'In-column Omega Filter' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 947392 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Gautomatch ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? Gctf ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' ? 'MODEL FITTING' ? 8 ? 1 ? Coot ? OTHER ? 9 ? ? ? ? ? 'MODEL REFINEMENT' ? 10 ? 1 ? PHENIX ? 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? RELION 3.1 CLASSIFICATION ? 13 1 ? ? RELION 3.1 RECONSTRUCTION ? 14 1 ? ? RELION 3.1 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8J7R 'double helix' 8J7R 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 3 1_555 B C 106 1_555 -0.080 -0.473 -1.368 -0.381 5.269 -3.816 1 C_G682:C785_C C 682 ? C 785 ? 19 1 1 B G 4 1_555 B C 105 1_555 -0.123 -0.349 -1.121 -3.655 4.219 -2.932 2 C_G683:C784_C C 683 ? C 784 ? 19 1 1 B C 5 1_555 B G 104 1_555 0.053 -0.271 -1.135 -4.713 -5.209 -1.435 3 C_C684:G783_C C 684 ? C 783 ? 19 1 1 B U 6 1_555 B G 103 1_555 3.150 -0.736 -0.122 -8.323 1.332 -4.198 4 C_U685:G782_C C 685 ? C 782 ? 28 1 1 B G 7 1_555 B A 102 1_555 6.797 -3.405 -0.131 11.305 5.008 -11.941 5 C_G686:A781_C C 686 ? C 781 ? 11 10 1 B A 8 1_555 B U 101 1_555 -4.468 -2.521 -0.668 5.327 -9.835 -94.952 6 C_A687:U780_C C 687 ? C 780 ? 24 4 1 B G 10 1_555 B C 100 1_555 -0.833 -0.224 -0.284 0.644 -4.117 -5.695 7 C_G689:C779_C C 689 ? C 779 ? 19 1 1 B G 11 1_555 B U 99 1_555 -2.074 -0.502 -0.598 1.866 1.142 -3.956 8 C_G690:U778_C C 690 ? C 778 ? 28 1 1 B A 12 1_555 B C 97 1_555 -3.149 -0.667 -0.846 5.953 -14.268 -3.620 9 C_A691:C776_C C 691 ? C 776 ? ? 1 1 B A 95 1_555 B G 52 1_555 0.827 1.571 -0.714 4.132 -19.272 -12.307 10 C_A774:G731_C C 774 ? C 731 ? 8 1 1 B G 14 1_555 B A 94 1_555 -4.514 1.309 0.357 12.690 -3.497 69.140 11 C_G693:A773_C C 693 ? C 773 ? ? 5 1 B C 15 1_555 B G 51 1_555 -0.452 0.064 0.668 5.262 -5.097 3.103 12 C_C694:G730_C C 694 ? C 730 ? 19 1 1 B C 16 1_555 B G 50 1_555 0.189 -0.146 0.139 7.113 -5.244 0.438 13 C_C695:G729_C C 695 ? C 729 ? 19 1 1 B C 17 1_555 B G 49 1_555 0.226 -0.157 0.044 -0.810 -3.768 -1.278 14 C_C696:G728_C C 696 ? C 728 ? 19 1 1 B A 18 1_555 B U 48 1_555 0.180 -0.077 -0.238 -6.104 -3.396 -2.113 15 C_A697:U727_C C 697 ? C 727 ? 20 1 1 B G 19 1_555 B C 47 1_555 0.032 -0.064 -0.233 -4.761 -5.848 -2.498 16 C_G698:C726_C C 698 ? C 726 ? 19 1 1 B A 20 1_555 B U 46 1_555 -0.031 -0.163 -0.650 -6.336 -9.708 -3.735 17 C_A699:U725_C C 699 ? C 725 ? 20 1 1 B A 21 1_555 B G 44 1_555 -6.603 -3.944 -1.080 -2.596 -5.802 -4.694 18 C_A700:G723_C C 700 ? C 723 ? 11 9 1 B G 22 1_555 B U 43 1_555 -2.609 -0.495 -0.934 -5.156 -5.808 4.378 19 C_G701:U722_C C 701 ? C 722 ? 28 1 1 B G 23 1_555 B C 42 1_555 -0.164 -0.237 -0.985 -2.623 0.820 0.424 20 C_G702:C721_C C 702 ? C 721 ? 19 1 1 B U 24 1_555 B U 41 1_555 4.180 -2.182 -0.989 6.999 -5.439 -2.892 21 C_U703:U720_C C 703 ? C 720 ? 16 1 1 B C 26 1_555 B A 40 1_555 -2.531 0.530 0.733 17.722 14.335 -2.181 22 C_C705:A719_C C 705 ? C 719 ? ? ? 1 B C 27 1_555 B G 39 1_555 0.172 -0.200 0.597 11.158 -0.436 0.469 23 C_C706:G718_C C 706 ? C 718 ? 19 1 1 B C 28 1_555 B G 38 1_555 0.196 -0.137 0.094 5.117 0.003 0.942 24 C_C707:G717_C C 707 ? C 717 ? 19 1 1 B C 29 1_555 B G 37 1_555 0.147 -0.103 -0.017 1.867 -6.285 1.137 25 C_C708:G716_C C 708 ? C 716 ? 19 1 1 B A 30 1_555 B U 36 1_555 0.077 -0.121 -0.490 -4.832 -1.679 -0.774 26 C_A709:U715_C C 709 ? C 715 ? 20 1 1 B U 31 1_555 B A 35 1_555 -0.092 -0.144 -0.682 4.248 2.537 -2.386 27 C_U710:A714_C C 710 ? C 714 ? 20 1 1 B C 72 1_555 B G 66 1_555 0.181 -0.200 -0.483 -5.261 11.675 -0.523 28 C_C751:G745_C C 751 ? C 745 ? 19 1 1 B A 73 1_555 B U 65 1_555 -0.005 -0.109 0.093 -5.172 0.087 0.115 29 C_A752:U744_C C 752 ? C 744 ? 20 1 1 B U 74 1_555 B A 64 1_555 -0.075 -0.097 0.081 0.345 2.439 0.555 30 C_U753:A743_C C 753 ? C 743 ? 20 1 1 B G 75 1_555 B C 63 1_555 -0.208 -0.175 -0.256 0.807 -5.408 0.536 31 C_G754:C742_C C 754 ? C 742 ? 19 1 1 B U 76 1_555 B A 62 1_555 -0.050 -0.048 -0.108 4.468 -6.643 0.039 32 C_U755:A741_C C 755 ? C 741 ? 20 1 1 B G 77 1_555 B C 61 1_555 -0.148 -0.230 -0.898 -1.156 1.841 -0.521 33 C_G756:C740_C C 756 ? C 740 ? 19 1 1 B U 78 1_555 B G 60 1_555 1.924 -0.619 -1.371 14.064 -0.733 -5.664 34 C_U757:G739_C C 757 ? C 739 ? 28 1 1 B A 81 1_555 B U 59 1_555 0.004 -0.173 0.335 -0.453 -6.190 3.262 35 C_A760:U738_C C 760 ? C 738 ? 20 1 1 B U 83 1_555 B G 58 1_555 1.447 -0.367 -0.115 4.382 -9.847 -4.967 36 C_U762:G737_C C 762 ? C 737 ? 28 1 1 B C 84 1_555 B G 57 1_555 -0.286 -0.060 -0.153 3.849 -10.074 -5.430 37 C_C763:G736_C C 763 ? C 736 ? 19 1 1 B G 85 1_555 B C 56 1_555 -0.224 -0.120 -0.147 2.991 -2.365 -0.512 38 C_G764:C735_C C 764 ? C 735 ? 19 1 1 B A 86 1_555 B U 55 1_555 -0.876 0.190 -0.316 -5.959 -0.590 13.693 39 C_A765:U734_C C 765 ? C 734 ? 20 1 1 B G 87 1_555 B C 54 1_555 -0.579 -0.178 -0.100 0.442 -5.891 -0.442 40 C_G766:C733_C C 766 ? C 733 ? 19 1 1 B G 88 1_555 B C 53 1_555 -0.996 -0.372 -0.645 -5.519 -11.235 1.950 41 C_G767:C732_C C 767 ? C 732 ? 19 1 1 B U 89 1_555 B A 93 1_555 4.210 -2.324 -0.779 -8.300 -1.109 -89.592 42 C_U768:A772_C C 768 ? C 772 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 3 1_555 B C 106 1_555 B G 4 1_555 B C 105 1_555 -0.205 -1.790 4.093 4.406 5.288 34.352 -3.936 1.141 3.731 8.843 -7.369 35.015 1 CC_G682G683:C784C785_CC C 682 ? C 785 ? C 683 ? C 784 ? 1 B G 4 1_555 B C 105 1_555 B C 5 1_555 B G 104 1_555 -0.285 -1.740 3.439 0.716 8.405 33.460 -4.225 0.591 2.923 14.318 -1.220 34.478 2 CC_G683C684:G783C784_CC C 683 ? C 784 ? C 684 ? C 783 ? 1 B C 5 1_555 B G 104 1_555 B U 6 1_555 B G 103 1_555 0.255 -1.213 3.644 -0.282 4.752 48.259 -1.879 -0.335 3.515 5.795 0.343 48.479 3 CC_C684U685:G782G783_CC C 684 ? C 783 ? C 685 ? C 782 ? 1 B U 6 1_555 B G 103 1_555 B G 7 1_555 B A 102 1_555 -1.891 -0.819 3.061 6.298 2.197 43.104 -1.291 3.086 2.729 2.969 -8.511 43.593 4 CC_U685G686:A781G782_CC C 685 ? C 782 ? C 686 ? C 781 ? 1 B G 7 1_555 B A 102 1_555 B A 8 1_555 B U 101 1_555 -4.966 -0.816 3.493 -4.495 4.951 -4.302 -3.101 -43.978 -0.408 -42.412 -38.505 -7.950 5 CC_G686A687:U780A781_CC C 686 ? C 781 ? C 687 ? C 780 ? 1 B A 8 1_555 B U 101 1_555 B G 10 1_555 B C 100 1_555 2.541 -2.006 3.523 -4.241 2.253 71.221 -1.800 -2.330 3.331 1.932 3.638 71.361 6 CC_A687G689:C779U780_CC C 687 ? C 780 ? C 689 ? C 779 ? 1 B G 10 1_555 B C 100 1_555 B G 11 1_555 B U 99 1_555 0.181 -1.783 3.448 -2.324 1.092 25.660 -4.313 -1.081 3.341 2.451 5.217 25.786 7 CC_G689G690:U778C779_CC C 689 ? C 779 ? C 690 ? C 778 ? 1 B G 11 1_555 B U 99 1_555 B A 12 1_555 B C 97 1_555 2.157 -0.723 3.354 -7.612 9.541 50.923 -1.429 -2.933 2.858 10.917 8.710 52.270 8 CC_G690A691:C776U778_CC C 690 ? C 778 ? C 691 ? C 776 ? 1 B A 12 1_555 B C 97 1_555 B A 95 1_555 B G 52 1_555 -0.506 -5.148 3.563 -18.402 19.795 126.041 -3.030 0.131 3.133 11.054 10.276 127.651 9 CC_A691A774:G731C776_CC C 691 ? C 776 ? C 774 ? C 731 ? 1 B A 95 1_555 B G 52 1_555 B G 14 1_555 B A 94 1_555 1.284 -0.417 3.563 -7.355 4.305 -73.738 0.196 0.809 3.675 -3.576 -6.109 -74.160 10 CC_A774G693:A773G731_CC C 774 ? C 731 ? C 693 ? C 773 ? 1 B G 14 1_555 B A 94 1_555 B C 15 1_555 B G 51 1_555 0.306 0.335 3.308 -6.932 -1.845 79.109 0.312 -0.428 3.270 -1.446 5.432 79.380 11 CC_G693C694:G730A773_CC C 693 ? C 773 ? C 694 ? C 730 ? 1 B C 15 1_555 B G 51 1_555 B C 16 1_555 B G 50 1_555 -0.210 -1.412 3.085 -0.381 2.382 36.079 -2.587 0.288 2.991 3.841 0.615 36.157 12 CC_C694C695:G729G730_CC C 694 ? C 730 ? C 695 ? C 729 ? 1 B C 16 1_555 B G 50 1_555 B C 17 1_555 B G 49 1_555 -0.252 -1.941 3.193 -0.105 13.248 35.281 -4.519 0.379 2.340 20.968 0.167 37.612 13 CC_C695C696:G728G729_CC C 695 ? C 729 ? C 696 ? C 728 ? 1 B C 17 1_555 B G 49 1_555 B A 18 1_555 B U 48 1_555 -0.768 -1.702 3.275 -2.246 10.553 28.797 -5.124 1.044 2.558 20.339 4.328 30.712 14 CC_C696A697:U727G728_CC C 696 ? C 728 ? C 697 ? C 727 ? 1 B A 18 1_555 B U 48 1_555 B G 19 1_555 B C 47 1_555 0.148 -1.794 3.192 -2.332 6.817 31.426 -4.347 -0.648 2.735 12.383 4.236 32.221 15 CC_A697G698:C726U727_CC C 697 ? C 727 ? C 698 ? C 726 ? 1 B G 19 1_555 B C 47 1_555 B A 20 1_555 B U 46 1_555 -0.340 -1.753 3.333 -1.687 7.391 32.961 -4.168 0.322 2.897 12.816 2.925 33.798 16 CC_G698A699:U725C726_CC C 698 ? C 726 ? C 699 ? C 725 ? 1 B A 20 1_555 B U 46 1_555 B A 21 1_555 B G 44 1_555 1.412 0.145 3.244 -13.018 8.320 23.065 -1.499 -5.766 2.098 18.394 28.782 27.703 17 CC_A699A700:G723U725_CC C 699 ? C 725 ? C 700 ? C 723 ? 1 B A 21 1_555 B G 44 1_555 B G 22 1_555 B U 43 1_555 0.707 -0.473 3.846 -4.392 1.137 55.847 -0.580 -1.046 3.775 1.212 4.681 56.016 18 CC_A700G701:U722G723_CC C 700 ? C 723 ? C 701 ? C 722 ? 1 B G 22 1_555 B U 43 1_555 B G 23 1_555 B C 42 1_555 -1.045 -1.776 3.365 -4.674 6.073 32.304 -4.133 1.043 3.106 10.728 8.256 33.177 19 CC_G701G702:C721U722_CC C 701 ? C 722 ? C 702 ? C 721 ? 1 B G 23 1_555 B C 42 1_555 B U 24 1_555 B U 41 1_555 0.171 -0.867 3.069 1.226 3.203 51.574 -1.197 -0.119 3.017 3.676 -1.407 51.680 20 CC_G702U703:U720C721_CC C 702 ? C 721 ? C 703 ? C 720 ? 1 B U 24 1_555 B U 41 1_555 B C 26 1_555 B A 40 1_555 -2.764 0.229 3.839 -1.043 16.839 20.678 -4.907 5.665 3.242 39.493 2.446 26.629 21 CC_U703C705:A719U720_CC C 703 ? C 720 ? C 705 ? C 719 ? 1 B C 26 1_555 B A 40 1_555 B C 27 1_555 B G 39 1_555 0.465 -2.013 3.168 -3.116 4.188 44.521 -2.997 -0.875 2.940 5.505 4.095 44.810 22 CC_C705C706:G718A719_CC C 705 ? C 719 ? C 706 ? C 718 ? 1 B C 27 1_555 B G 39 1_555 B C 28 1_555 B G 38 1_555 -0.117 -2.051 3.116 2.518 4.942 33.085 -4.291 0.577 2.773 8.603 -4.383 33.534 23 CC_C706C707:G717G718_CC C 706 ? C 718 ? C 707 ? C 717 ? 1 B C 28 1_555 B G 38 1_555 B C 29 1_555 B G 37 1_555 -0.131 -1.914 2.992 1.300 6.688 33.036 -4.233 0.407 2.560 11.607 -2.257 33.712 24 CC_C707C708:G716G717_CC C 707 ? C 717 ? C 708 ? C 716 ? 1 B C 29 1_555 B G 37 1_555 B A 30 1_555 B U 36 1_555 -0.186 -1.623 3.125 2.637 17.034 30.034 -4.927 0.653 1.932 29.968 -4.640 34.530 25 CC_C708A709:U715G716_CC C 708 ? C 716 ? C 709 ? C 715 ? 1 B A 30 1_555 B U 36 1_555 B U 31 1_555 B A 35 1_555 0.185 -1.218 3.166 0.018 2.749 27.477 -3.188 -0.383 3.032 5.768 -0.038 27.612 26 CC_A709U710:A714U715_CC C 709 ? C 715 ? C 710 ? C 714 ? 1 B C 72 1_555 B G 66 1_555 B A 73 1_555 B U 65 1_555 -0.243 -1.579 3.107 -0.759 7.552 31.793 -3.982 0.315 2.676 13.545 1.361 32.663 27 CC_C751A752:U744G745_CC C 751 ? C 745 ? C 752 ? C 744 ? 1 B A 73 1_555 B U 65 1_555 B U 74 1_555 B A 64 1_555 -0.503 -1.525 3.101 -0.904 2.805 31.680 -3.258 0.765 2.971 5.125 1.651 31.813 28 CC_A752U753:A743U744_CC C 752 ? C 744 ? C 753 ? C 743 ? 1 B U 74 1_555 B A 64 1_555 B G 75 1_555 B C 63 1_555 -0.018 -1.322 3.014 1.887 7.893 34.099 -3.238 0.279 2.647 13.228 -3.162 35.023 29 CC_U753G754:C742A743_CC C 753 ? C 743 ? C 754 ? C 742 ? 1 B G 75 1_555 B C 63 1_555 B U 76 1_555 B A 62 1_555 0.131 -1.491 3.222 1.232 0.342 31.411 -2.816 -0.014 3.208 0.631 -2.274 31.436 30 CC_G754U755:A741C742_CC C 754 ? C 742 ? C 755 ? C 741 ? 1 B U 76 1_555 B A 62 1_555 B G 77 1_555 B C 61 1_555 -0.192 -1.190 3.233 4.395 25.491 33.235 -4.006 0.672 1.863 38.201 -6.586 41.889 31 CC_U755G756:C740A741_CC C 755 ? C 741 ? C 756 ? C 740 ? 1 B G 77 1_555 B C 61 1_555 B U 78 1_555 B G 60 1_555 -0.281 -0.862 2.986 3.493 3.420 35.845 -1.821 0.894 2.856 5.524 -5.642 36.166 32 CC_G756U757:G739C740_CC C 756 ? C 740 ? C 757 ? C 739 ? 1 B U 78 1_555 B G 60 1_555 B A 81 1_555 B U 59 1_555 -1.050 -1.126 3.694 -10.583 9.294 36.293 -2.981 0.113 3.475 14.277 16.257 38.845 33 CC_U757A760:U738G739_CC C 757 ? C 739 ? C 760 ? C 738 ? 1 B A 81 1_555 B U 59 1_555 B U 83 1_555 B G 58 1_555 0.260 -1.297 3.123 5.113 1.967 31.511 -2.692 0.406 3.042 3.588 -9.327 31.972 34 CC_A760U762:G737U738_CC C 760 ? C 738 ? C 762 ? C 737 ? 1 B U 83 1_555 B G 58 1_555 B C 84 1_555 B G 57 1_555 0.133 -1.523 2.897 5.151 9.157 31.871 -3.887 0.469 2.373 16.136 -9.077 33.516 35 CC_U762C763:G736G737_CC C 762 ? C 737 ? C 763 ? C 736 ? 1 B C 84 1_555 B G 57 1_555 B G 85 1_555 B C 56 1_555 0.843 -1.668 3.050 0.753 9.258 27.187 -5.146 -1.556 2.386 19.003 -1.546 28.702 36 CC_C763G764:C735G736_CC C 763 ? C 736 ? C 764 ? C 735 ? 1 B G 85 1_555 B C 56 1_555 B A 86 1_555 B U 55 1_555 0.243 -1.949 3.149 -4.853 13.700 31.734 -5.011 -1.027 2.097 23.569 8.349 34.826 37 CC_G764A765:U734C735_CC C 764 ? C 735 ? C 765 ? C 734 ? 1 B A 86 1_555 B U 55 1_555 B G 87 1_555 B C 54 1_555 -0.071 -1.465 3.247 -0.250 0.213 30.913 -2.790 0.085 3.238 0.401 0.469 30.915 38 CC_A765G766:C733U734_CC C 765 ? C 734 ? C 766 ? C 733 ? 1 B G 87 1_555 B C 54 1_555 B G 88 1_555 B C 53 1_555 0.210 -1.755 3.448 -0.434 5.792 30.675 -4.368 -0.473 3.070 10.827 0.810 31.207 39 CC_G766G767:C732C733_CC C 766 ? C 733 ? C 767 ? C 732 ? 1 B G 88 1_555 B C 53 1_555 B U 89 1_555 B A 93 1_555 -2.900 -1.848 3.372 -0.643 2.272 85.413 -1.415 2.122 3.349 1.675 0.474 85.440 40 CC_G767U768:A772C732_CC C 767 ? C 732 ? C 768 ? C 772 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Agency for Medical Research and Development (AMED)' Japan 21ae0121028h0001 1 'Japan Society for the Promotion of Science (JSPS)' Japan 20H00451 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #