HEADER ISOMERASE 05-MAY-23 8JA1 TITLE ASFV TOPOISOMERASE ATPASE DOMAIN IN COMPLEX WITH AMP-PNP AND MG2+ TITLE 2 (OXIDIZED FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATPASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 10497; SOURCE 4 GENE: P1192R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GHKL NUCLEOTIDE-BINDING FOLD, TOPOISOMERASE, AMP-PNP, ASFV, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-W.CHANG,A.H.PANG,M.-D.TSAI REVDAT 2 17-APR-24 8JA1 1 JRNL REVDAT 1 07-FEB-24 8JA1 0 JRNL AUTH C.M.CHANG,S.C.WANG,C.H.WANG,A.H.PANG,C.H.YANG,Y.K.CHANG, JRNL AUTH 2 W.J.WU,M.D.TSAI JRNL TITL A UNIFIED VIEW ON ENZYME CATALYSIS BY CRYO-EM STUDY OF A DNA JRNL TITL 2 TOPOISOMERASE. JRNL REF COMMUN CHEM V. 7 45 2024 JRNL REFN ESSN 2399-3669 JRNL PMID 38418525 JRNL DOI 10.1038/S42004-024-01129-Y REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 166508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 8242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1300 - 3.5400 1.00 5777 324 0.1824 0.1695 REMARK 3 2 3.5400 - 2.8100 1.00 5512 284 0.1762 0.1711 REMARK 3 3 2.8100 - 2.4600 1.00 5414 283 0.1774 0.1866 REMARK 3 4 2.4600 - 2.2300 1.00 5432 238 0.1730 0.1818 REMARK 3 5 2.2300 - 2.0700 1.00 5364 269 0.1694 0.1834 REMARK 3 6 2.0700 - 1.9500 1.00 5295 304 0.1682 0.1924 REMARK 3 7 1.9500 - 1.8500 1.00 5344 262 0.1752 0.1714 REMARK 3 8 1.8500 - 1.7700 1.00 5316 268 0.1722 0.1731 REMARK 3 9 1.7700 - 1.7000 1.00 5264 298 0.1710 0.1797 REMARK 3 10 1.7000 - 1.6500 1.00 5259 284 0.1709 0.1737 REMARK 3 11 1.6500 - 1.5900 1.00 5277 289 0.1716 0.1746 REMARK 3 12 1.5900 - 1.5500 1.00 5272 279 0.1737 0.1824 REMARK 3 13 1.5500 - 1.5100 1.00 5239 283 0.1784 0.1970 REMARK 3 14 1.5100 - 1.4700 1.00 5266 273 0.1816 0.1986 REMARK 3 15 1.4700 - 1.4400 1.00 5250 264 0.1836 0.1891 REMARK 3 16 1.4400 - 1.4100 1.00 5223 277 0.1894 0.2226 REMARK 3 17 1.4100 - 1.3800 1.00 5245 273 0.1926 0.1994 REMARK 3 18 1.3800 - 1.3500 1.00 5256 286 0.1940 0.2050 REMARK 3 19 1.3500 - 1.3300 1.00 5226 276 0.2010 0.1965 REMARK 3 20 1.3300 - 1.3100 1.00 5203 274 0.2074 0.2075 REMARK 3 21 1.3100 - 1.2900 1.00 5272 246 0.2068 0.2283 REMARK 3 22 1.2900 - 1.2700 1.00 5225 262 0.2108 0.1896 REMARK 3 23 1.2700 - 1.2500 1.00 5211 270 0.2150 0.2314 REMARK 3 24 1.2500 - 1.2300 1.00 5217 273 0.2207 0.2236 REMARK 3 25 1.2300 - 1.2100 1.00 5221 269 0.2205 0.2254 REMARK 3 26 1.2100 - 1.2000 1.00 5222 269 0.2269 0.2284 REMARK 3 27 1.2000 - 1.1800 1.00 5209 272 0.2406 0.2581 REMARK 3 28 1.1800 - 1.1700 1.00 5209 260 0.2590 0.2616 REMARK 3 29 1.1700 - 1.1500 0.99 5143 290 0.2773 0.2644 REMARK 3 30 1.1500 - 1.1400 0.95 4903 243 0.2986 0.3157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.107 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.814 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3051 REMARK 3 ANGLE : 1.037 4158 REMARK 3 CHIRALITY : 0.091 488 REMARK 3 PLANARITY : 0.008 520 REMARK 3 DIHEDRAL : 12.825 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300033991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 43.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LISO4, TRIS-HCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.76733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.53467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.15100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 176.91833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.38367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.76733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.53467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 176.91833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.15100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.38367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 907 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1022 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1044 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1054 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 37 REMARK 465 ASP A 38 REMARK 465 GLU A 39 REMARK 465 THR A 333 REMARK 465 ILE A 334 REMARK 465 LYS A 335 REMARK 465 ASP A 336 REMARK 465 LYS A 337 REMARK 465 ASN A 338 REMARK 465 ARG A 339 REMARK 465 LYS A 340 REMARK 465 THR A 341 REMARK 465 THR A 342 REMARK 465 LEU A 343 REMARK 465 ARG A 344 REMARK 465 ASP A 345 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 ILE A 404 REMARK 465 SER A 405 REMARK 465 LYS A 406 REMARK 465 LYS A 407 REMARK 465 ASP A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 9 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 36 OG1 CG2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 SER A 74 OG REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 THR A 76 OG1 CG2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 MET A 325 CG SD CE REMARK 470 ILE A 327 CG1 CG2 CD1 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 GLN A 331 CG CD OE1 NE2 REMARK 470 SER A 346 OG REMARK 470 ARG A 394 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 720 O HOH A 992 1.92 REMARK 500 O HOH A 771 O HOH A 1025 1.92 REMARK 500 O HOH A 989 O HOH A 1028 1.95 REMARK 500 O HOH A 1031 O HOH A 1087 2.01 REMARK 500 O HOH A 1005 O HOH A 1017 2.01 REMARK 500 O HOH A 616 O HOH A 787 2.01 REMARK 500 O HOH A 997 O HOH A 1012 2.05 REMARK 500 O HOH A 849 O HOH A 914 2.06 REMARK 500 O HOH A 892 O HOH A 1020 2.07 REMARK 500 O HOH A 813 O HOH A 1036 2.08 REMARK 500 O HOH A 922 O HOH A 1071 2.08 REMARK 500 O HOH A 801 O HOH A 1033 2.14 REMARK 500 O HOH A 777 O HOH A 1025 2.18 REMARK 500 O HOH A 769 O HOH A 818 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 963 O HOH A 1043 8555 2.17 REMARK 500 O HOH A 994 O HOH A 1082 10444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 47 48.99 -94.62 REMARK 500 ASP A 96 -154.42 -88.91 REMARK 500 ASN A 133 52.35 -111.31 REMARK 500 THR A 143 -32.39 -145.83 REMARK 500 ARG A 247 59.24 -92.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1118 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 7.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 64 OD1 REMARK 620 2 ANP A 502 O1A 90.7 REMARK 620 3 ANP A 502 O2G 172.2 96.8 REMARK 620 4 ANP A 502 O1B 90.1 84.6 93.0 REMARK 620 5 HOH A 627 O 86.7 90.7 90.9 174.2 REMARK 620 6 HOH A 806 O 84.5 174.7 88.1 93.1 91.3 REMARK 620 N 1 2 3 4 5 DBREF1 8JA1 A 1 408 UNP A0A0A1E3Q0_ASF DBREF2 8JA1 A A0A0A1E3Q0 1 408 SEQRES 1 A 408 MET GLU ALA PHE GLU ILE SER ASP PHE LYS GLU HIS ALA SEQRES 2 A 408 LYS LYS LYS SER MET TRP ALA GLY ALA LEU ASN LYS VAL SEQRES 3 A 408 THR ILE SER GLY LEU MET GLY VAL PHE THR GLU ASP GLU SEQRES 4 A 408 ASP LEU MET ALA LEU PRO ILE HIS ARG ASP HIS CYS PRO SEQRES 5 A 408 ALA LEU LEU LYS ILE PHE ASP GLU LEU ILE VAL ASN ALA SEQRES 6 A 408 THR ASP HIS GLU ARG ALA CYS HIS SER LYS THR LYS LYS SEQRES 7 A 408 VAL THR TYR ILE LYS ILE SER PHE ASP LYS GLY VAL PHE SEQRES 8 A 408 SER CYS GLU ASN ASP GLY PRO GLY ILE PRO ILE ALA LYS SEQRES 9 A 408 HIS GLU GLN ALA SER LEU ILE ALA LYS ARG ASP VAL TYR SEQRES 10 A 408 VAL PRO GLU VAL ALA SER CYS PHE PHE LEU ALA GLY THR SEQRES 11 A 408 ASN ILE ASN LYS ALA LYS ASP CYS ILE LYS GLY GLY THR SEQRES 12 A 408 ASN GLY VAL GLY LEU LYS LEU ALA MET VAL HIS SER GLN SEQRES 13 A 408 TRP ALA ILE LEU THR THR ALA ASP GLY ALA GLN LYS TYR SEQRES 14 A 408 VAL GLN GLN ILE ASN GLN ARG LEU ASP ILE ILE GLU PRO SEQRES 15 A 408 PRO THR ILE THR PRO SER ARG GLU MET PHE THR ARG ILE SEQRES 16 A 408 GLU LEU MET PRO VAL TYR GLN GLU LEU GLY TYR ALA GLU SEQRES 17 A 408 PRO LEU SER GLU THR GLU GLN ALA ASP LEU SER ALA TRP SEQRES 18 A 408 ILE TYR LEU ARG ALA CYS GLN CYS ALA ALA TYR VAL GLY SEQRES 19 A 408 LYS GLY THR THR ILE TYR TYR ASN ASP LYS PRO CYS ARG SEQRES 20 A 408 THR GLY SER VAL MET ALA LEU ALA LYS MET TYR THR LEU SEQRES 21 A 408 LEU SER ALA PRO ASN SER THR ILE HIS THR ALA THR ILE SEQRES 22 A 408 LYS ALA ASP ALA LYS PRO TYR SER LEU HIS PRO LEU GLN SEQRES 23 A 408 VAL ALA ALA VAL VAL SER PRO LYS PHE LYS LYS PHE GLU SEQRES 24 A 408 HIS VAL SER ILE ILE ASN GLY VAL ASN CYS VAL LYS GLY SEQRES 25 A 408 GLU HIS VAL THR PHE LEU LYS LYS THR ILE ASN GLU MET SEQRES 26 A 408 VAL ILE LYS LYS PHE GLN GLN THR ILE LYS ASP LYS ASN SEQRES 27 A 408 ARG LYS THR THR LEU ARG ASP SER CYS SER ASN ILE PHE SEQRES 28 A 408 VAL VAL ILE VAL GLY SER ILE PRO GLY ILE GLU TRP THR SEQRES 29 A 408 GLY GLN ARG LYS ASP GLU LEU SER ILE ALA GLU ASN VAL SEQRES 30 A 408 PHE LYS THR HIS TYR SER ILE PRO SER SER PHE LEU THR SEQRES 31 A 408 SER MET THR ARG SER ILE VAL ASP ILE LEU LEU GLN SER SEQRES 32 A 408 ILE SER LYS LYS ASP HET MG A 501 1 HET ANP A 502 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *521(H2 O) HELIX 1 AA1 ASP A 8 LYS A 16 1 9 HELIX 2 AA2 CYS A 51 HIS A 68 1 18 HELIX 3 AA3 HIS A 105 LYS A 113 1 9 HELIX 4 AA4 TYR A 117 PHE A 125 1 9 HELIX 5 AA5 VAL A 146 HIS A 154 1 9 HELIX 6 AA6 TYR A 201 GLY A 205 5 5 HELIX 7 AA7 SER A 211 VAL A 233 1 23 HELIX 8 AA8 SER A 250 LEU A 260 1 11 HELIX 9 AA9 PRO A 279 HIS A 283 5 5 HELIX 10 AB1 GLY A 312 GLN A 332 1 21 HELIX 11 AB2 GLU A 375 HIS A 381 1 7 HELIX 12 AB3 PRO A 385 LEU A 401 1 17 SHEET 1 AA1 2 MET A 32 PHE A 35 0 SHEET 2 AA1 2 MET A 42 PRO A 45 -1 O LEU A 44 N GLY A 33 SHEET 1 AA2 3 ILE A 179 ILE A 180 0 SHEET 2 AA2 3 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA2 3 THR A 184 PRO A 187 -1 O THR A 186 N LYS A 168 SHEET 1 AA3 8 ILE A 179 ILE A 180 0 SHEET 2 AA3 8 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA3 8 SER A 155 ASP A 164 -1 N THR A 162 O TYR A 169 SHEET 4 AA3 8 MET A 191 PRO A 199 -1 O ARG A 194 N THR A 161 SHEET 5 AA3 8 VAL A 90 ASN A 95 -1 N PHE A 91 O LEU A 197 SHEET 6 AA3 8 TYR A 81 ASP A 87 -1 N LYS A 83 O GLU A 94 SHEET 7 AA3 8 THR A 238 TYR A 241 1 O TYR A 240 N ILE A 84 SHEET 8 AA3 8 LYS A 244 PRO A 245 -1 O LYS A 244 N TYR A 241 SHEET 1 AA4 6 VAL A 307 CYS A 309 0 SHEET 2 AA4 6 GLU A 299 ILE A 304 -1 N ILE A 304 O VAL A 307 SHEET 3 AA4 6 ILE A 350 GLY A 356 1 O ILE A 354 N VAL A 301 SHEET 4 AA4 6 LEU A 285 VAL A 291 -1 N ALA A 288 O VAL A 353 SHEET 5 AA4 6 HIS A 269 ALA A 275 -1 N HIS A 269 O ALA A 289 SHEET 6 AA4 6 TYR A 382 SER A 383 -1 O SER A 383 N LYS A 274 SHEET 1 AA5 2 GLU A 362 TRP A 363 0 SHEET 2 AA5 2 LEU A 371 SER A 372 -1 O SER A 372 N GLU A 362 SSBOND 1 CYS A 72 CYS A 138 1555 1555 2.06 LINK OD1 ASN A 64 MG MG A 501 1555 1555 2.07 LINK MG MG A 501 O1A ANP A 502 1555 1555 2.15 LINK MG MG A 501 O2G ANP A 502 1555 1555 1.97 LINK MG MG A 501 O1B ANP A 502 1555 1555 2.08 LINK MG MG A 501 O HOH A 627 1555 1555 2.06 LINK MG MG A 501 O HOH A 806 1555 1555 2.14 CISPEP 1 GLU A 208 PRO A 209 0 3.45 CISPEP 2 LYS A 278 PRO A 279 0 1.39 CRYST1 85.759 85.759 212.302 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011661 0.006732 0.000000 0.00000 SCALE2 0.000000 0.013464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004710 0.00000