HEADER OXIDOREDUCTASE 07-MAY-23 8JAT TITLE CRYSTAL STRUCTURE OF THE 3-KETODIHYDROSPHINGOSINE REDUCTASE TSC10 FROM TITLE 2 CRYPTOCOCCUS NEOFORMANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETODIHYDROSPHINGOSINE REDUCTASE TSC10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEHYDROSPHINGANINE REDUCTASE,KDS REDUCTASE; COMPND 5 EC: 1.1.1.102; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. NEOFORMANS JEC21; SOURCE 3 ORGANISM_TAXID: 214684; SOURCE 4 GENE: TSC10, CNG00270; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 3-KETODIHYDROSPHINGOSINE REDUCTASE, CRYPTOCOCCUS NEOFORMANS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHAO,Z.KUANG REVDAT 2 29-MAY-24 8JAT 1 REMARK REVDAT 1 21-JUN-23 8JAT 0 JRNL AUTH P.ZHAO,Z.ZHUANG,X.GUAN,J.YANG,W.WANG,Z.KUANG JRNL TITL CRYSTAL STRUCTURE OF THE 3-KETODIHYDROSPHINGOSINE REDUCTASE JRNL TITL 2 TSC10 FROM CRYPTOCOCCUS NEOFORMANS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 670 73 2023 JRNL REFN ESSN 1090-2104 JRNL PMID 37285720 JRNL DOI 10.1016/J.BBRC.2023.05.109 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 4945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -3.42000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.520 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.411 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1612 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1529 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2185 ; 1.586 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3533 ; 1.225 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 8.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;33.432 ;22.029 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;19.845 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1782 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 341 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 812 ; 4.779 ; 6.451 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 811 ; 4.778 ; 6.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 7.548 ; 9.671 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1012 ; 7.545 ; 9.675 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 799 ; 5.292 ; 7.243 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 792 ; 5.220 ; 7.222 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1175 ; 8.409 ;10.594 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1841 ;11.773 ;79.681 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1842 ;11.771 ;79.686 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5219 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.50100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 19.70 REMARK 200 R MERGE FOR SHELL (I) : 2.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.79967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.59933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.19950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.99917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.39983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.79967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.59933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.99917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.19950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.39983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -26.79967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 PHE A 178 REMARK 465 LEU A 179 REMARK 465 SER A 180 REMARK 465 TYR A 181 REMARK 465 VAL A 182 REMARK 465 SER A 183 REMARK 465 PHE A 184 REMARK 465 ALA A 185 REMARK 465 GLY A 186 REMARK 465 CYS A 221 REMARK 465 GLY A 222 REMARK 465 ILE A 223 REMARK 465 SER A 224 REMARK 465 GLY A 225 REMARK 465 PRO A 226 REMARK 465 GLY A 227 REMARK 465 PHE A 228 REMARK 465 ASP A 229 REMARK 465 ALA A 230 REMARK 465 GLU A 231 REMARK 465 ASN A 232 REMARK 465 ARG A 233 REMARK 465 THR A 234 REMARK 465 LYS A 235 REMARK 465 PRO A 236 REMARK 465 ALA A 237 REMARK 465 VAL A 238 REMARK 465 THR A 239 REMARK 465 LYS A 240 REMARK 465 LYS A 241 REMARK 465 ILE A 242 REMARK 465 GLU A 243 REMARK 465 GLU A 244 REMARK 465 GLY A 245 REMARK 465 ASP A 246 REMARK 465 THR A 247 REMARK 465 PRO A 248 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 VAL A 274 REMARK 465 THR A 275 REMARK 465 GLU A 276 REMARK 465 PRO A 277 REMARK 465 ILE A 278 REMARK 465 ARG A 279 REMARK 465 LEU A 280 REMARK 465 ARG A 281 REMARK 465 SER A 282 REMARK 465 ASN A 283 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 VAL A 286 REMARK 465 PRO A 287 REMARK 465 THR A 288 REMARK 465 ASN A 289 REMARK 465 ASN A 290 REMARK 465 PHE A 291 REMARK 465 LEU A 292 REMARK 465 LEU A 293 REMARK 465 SER A 294 REMARK 465 GLY A 295 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 85 O PRO A 85 11555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 57 -34.62 -34.56 REMARK 500 PRO A 85 149.01 -39.31 REMARK 500 HIS A 113 34.64 -90.04 REMARK 500 ASP A 115 -9.85 62.29 REMARK 500 GLN A 116 116.62 -39.67 REMARK 500 ALA A 117 157.86 -44.32 REMARK 500 ASP A 119 -68.58 -95.21 REMARK 500 ARG A 129 65.62 -119.32 REMARK 500 TYR A 149 -74.71 -79.93 REMARK 500 GLN A 161 -34.54 -32.57 REMARK 500 THR A 169 -140.31 -106.28 REMARK 500 ALA A 176 -127.88 -125.29 REMARK 500 SER A 188 -104.20 -85.32 REMARK 500 SER A 206 -93.80 -65.70 REMARK 500 GLU A 207 -58.18 -29.48 REMARK 500 THR A 250 132.22 -39.36 REMARK 500 VAL A 253 -77.52 -52.24 REMARK 500 SER A 260 -78.36 -50.30 REMARK 500 THR A 270 -157.07 -116.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP A 401 DBREF 8JAT A 29 293 UNP P0CR36 TSC10_CRYNJ 29 293 SEQADV 8JAT MET A 28 UNP P0CR36 INITIATING METHIONINE SEQADV 8JAT PHE A 190 UNP P0CR36 TYR 190 ENGINEERED MUTATION SEQADV 8JAT SER A 294 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT GLY A 295 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT SER A 296 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 297 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 298 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 299 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 300 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 301 UNP P0CR36 EXPRESSION TAG SEQADV 8JAT HIS A 302 UNP P0CR36 EXPRESSION TAG SEQRES 1 A 275 MET SER ASN TYR ASP PRO ARG GLY LYS HIS CYS TYR ILE SEQRES 2 A 275 THR GLY GLY SER SER GLY LEU GLY LYS ALA LEU ALA GLU SEQRES 3 A 275 ARG LEU VAL LYS GLN GLY ALA HIS VAL THR ILE VAL GLY SEQRES 4 A 275 ARG ASP SER LYS LYS ALA GLU GLY VAL VAL GLU GLU LEU SEQRES 5 A 275 LYS ALA ILE ALA ALA PRO GLY GLN ILE ILE GLN CYS ILE SEQRES 6 A 275 ALA ALA ASP LEU THR SER PRO ILE ALA SER THR ASN ALA SEQRES 7 A 275 ILE HIS ALA ALA CYS LYS PRO HIS ALA ASP GLN ALA PRO SEQRES 8 A 275 ASP TYR VAL TYR LEU CYS ALA GLY PHE SER ARG PRO LYS SEQRES 9 A 275 LEU PHE VAL GLU THR THR LYS GLN GLU LEU LYS ASP GLY SEQRES 10 A 275 LEU ASP GLY VAL TYR TRP VAL SER ALA TYR THR ALA HIS SEQRES 11 A 275 GLU ALA CYS GLN MET MET SER LYS GLN ARG ARG THR GLY SEQRES 12 A 275 LYS ILE ILE PHE VAL ALA SER PHE LEU SER TYR VAL SER SEQRES 13 A 275 PHE ALA GLY TYR SER SER PHE SER PRO ALA LYS TYR ALA SEQRES 14 A 275 LEU ARG GLY LEU SER ASP ALA LEU ARG SER GLU MET LEU SEQRES 15 A 275 LEU HIS ASN ILE ASP ILE HIS ILE PHE LEU PRO CYS GLY SEQRES 16 A 275 ILE SER GLY PRO GLY PHE ASP ALA GLU ASN ARG THR LYS SEQRES 17 A 275 PRO ALA VAL THR LYS LYS ILE GLU GLU GLY ASP THR PRO SEQRES 18 A 275 ILE THR PRO ASP VAL CYS ALA ALA ALA LEU GLU SER GLY SEQRES 19 A 275 LEU LYS LYS GLY TYR TYR GLN ILE THR ASP ASN LEU VAL SEQRES 20 A 275 THR GLU PRO ILE ARG LEU ARG SER ASN GLY GLY VAL PRO SEQRES 21 A 275 THR ASN ASN PHE LEU LEU SER GLY SER HIS HIS HIS HIS SEQRES 22 A 275 HIS HIS HET NDP A 401 31 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 SER A 45 GLY A 59 1 15 HELIX 2 AA2 ASP A 68 ALA A 83 1 16 HELIX 3 AA3 SER A 98 ALA A 109 1 12 HELIX 4 AA4 THR A 137 TYR A 149 1 13 HELIX 5 AA5 TYR A 149 ARG A 167 1 19 HELIX 6 AA6 PHE A 190 MET A 208 1 19 HELIX 7 AA7 THR A 250 LYS A 264 1 15 SHEET 1 AA1 7 CYS A 91 ALA A 93 0 SHEET 2 AA1 7 HIS A 61 GLY A 66 1 N GLY A 66 O ILE A 92 SHEET 3 AA1 7 HIS A 37 THR A 41 1 N CYS A 38 O HIS A 61 SHEET 4 AA1 7 TYR A 120 LEU A 123 1 O TYR A 122 N THR A 41 SHEET 5 AA1 7 LYS A 171 VAL A 175 1 O ILE A 173 N VAL A 121 SHEET 6 AA1 7 ASP A 214 PHE A 218 1 O HIS A 216 N ILE A 172 SHEET 7 AA1 7 GLN A 268 ILE A 269 1 O ILE A 269 N ILE A 217 CRYST1 111.311 111.311 80.399 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008984 0.005187 0.000000 0.00000 SCALE2 0.000000 0.010374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012438 0.00000