HEADER STRUCTURAL PROTEIN 07-MAY-23 8JB1 TITLE CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM ATCC13032 IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 GENE: GAPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, DEHYDROGENASE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.F.SON,K.J.KIM REVDAT 1 06-DEC-23 8JB1 0 JRNL AUTH H.F.SON,W.PARK,S.KIM,I.K.KIM,K.J.KIM JRNL TITL STRUCTURE-BASED FUNCTIONAL ANALYSIS OF A NOVEL JRNL TITL 2 NADPH-PRODUCING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE JRNL TITL 3 FROM CORYNEBACTERIUM GLUTAMICUM. JRNL REF INT.J.BIOL.MACROMOL. V. 255 28103 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37992937 JRNL DOI 10.1016/J.IJBIOMAC.2023.128103 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 42947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.373 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7532 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7179 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10254 ; 1.608 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16422 ; 0.530 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 932 ; 8.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ; 9.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1240 ;17.161 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1206 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8941 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3740 ; 4.291 ; 4.337 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3740 ; 4.289 ; 4.337 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4668 ; 6.575 ; 7.778 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4669 ; 6.574 ; 7.779 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3792 ; 4.589 ; 4.707 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3793 ; 4.589 ; 4.707 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5587 ; 7.269 ; 8.444 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8202 ;10.255 ;41.670 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8203 ;10.255 ;41.670 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45137 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3K, HEPES/NAOH, SODIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.77700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.66550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.88850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.77700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.88850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 215.66550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.88850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 473 REMARK 465 ARG A 474 REMARK 465 ARG A 475 REMARK 465 GLN A 476 REMARK 465 PRO A 477 REMARK 465 ALA A 478 REMARK 465 VAL A 479 REMARK 465 LEU A 480 REMARK 465 LEU A 481 REMARK 465 GLU A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 GLU B 62 REMARK 465 GLU B 473 REMARK 465 ARG B 474 REMARK 465 ARG B 475 REMARK 465 GLN B 476 REMARK 465 PRO B 477 REMARK 465 ALA B 478 REMARK 465 VAL B 479 REMARK 465 LEU B 480 REMARK 465 LEU B 481 REMARK 465 GLU B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 87 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 29 O GLY A 81 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 35.75 73.90 REMARK 500 ILE A 58 -68.45 -109.04 REMARK 500 ASN A 79 81.70 -68.05 REMARK 500 SER A 93 38.86 -90.59 REMARK 500 SER A 99 -154.12 67.33 REMARK 500 THR A 100 140.50 -38.62 REMARK 500 ASP A 108 -34.15 -152.68 REMARK 500 ILE A 114 103.82 -42.66 REMARK 500 PHE A 130 46.11 -158.40 REMARK 500 ALA A 155 146.09 -170.19 REMARK 500 ASN A 161 -81.53 -107.52 REMARK 500 ASN A 198 -133.14 47.01 REMARK 500 ALA A 254 157.11 172.06 REMARK 500 ILE A 267 -50.74 -123.46 REMARK 500 ASN A 268 26.64 -144.65 REMARK 500 ALA A 282 -174.49 69.81 REMARK 500 ALA A 332 106.01 -46.24 REMARK 500 VAL A 371 127.57 82.04 REMARK 500 ASN A 381 32.16 -98.18 REMARK 500 GLU A 449 -61.24 -90.00 REMARK 500 PHE B 36 -123.24 50.02 REMARK 500 HIS B 57 -1.66 -59.93 REMARK 500 ILE B 59 -168.93 -117.96 REMARK 500 ASN B 79 88.42 -66.83 REMARK 500 ALA B 83 155.63 175.17 REMARK 500 GLU B 96 44.97 -106.45 REMARK 500 SER B 97 -65.77 -92.75 REMARK 500 SER B 99 132.64 -170.18 REMARK 500 PHE B 130 41.34 -149.11 REMARK 500 ASN B 161 -89.96 -121.13 REMARK 500 GLU B 163 -2.10 60.16 REMARK 500 ASN B 198 -128.88 48.75 REMARK 500 THR B 253 56.14 -90.47 REMARK 500 ASN B 268 36.02 -147.51 REMARK 500 ALA B 274 -35.54 -28.52 REMARK 500 ALA B 282 -167.33 63.08 REMARK 500 SER B 327 -98.98 -22.30 REMARK 500 PRO B 367 57.02 -65.54 REMARK 500 VAL B 371 138.72 96.57 REMARK 500 THR B 436 103.40 -164.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 336 MET A 337 149.47 REMARK 500 GLY B 162 GLU B 163 144.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 410 0.10 SIDE CHAIN REMARK 500 ARG B 174 0.09 SIDE CHAIN REMARK 500 ARG B 231 0.12 SIDE CHAIN REMARK 500 ARG B 365 0.08 SIDE CHAIN REMARK 500 ARG B 410 0.09 SIDE CHAIN REMARK 500 ARG B 467 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8JB1 A 1 480 UNP A0A8G0FZM1_CORGT DBREF2 8JB1 A A0A8G0FZM1 1 480 DBREF1 8JB1 B 1 480 UNP A0A8G0FZM1_CORGT DBREF2 8JB1 B A0A8G0FZM1 1 480 SEQADV 8JB1 LEU A 481 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 GLU A 482 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 483 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 484 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 485 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 486 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 487 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS A 488 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 LEU B 481 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 GLU B 482 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 483 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 484 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 485 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 486 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 487 UNP A0A8G0FZM EXPRESSION TAG SEQADV 8JB1 HIS B 488 UNP A0A8G0FZM EXPRESSION TAG SEQRES 1 A 488 MET THR HIS ASN HIS LYS ASP TRP ASN ASP ARG ILE ALA SEQRES 2 A 488 VAL ALA GLU GLU MET VAL PRO LEU ILE GLY ARG LEU HIS SEQRES 3 A 488 ARG ASN ASN ASN VAL VAL VAL SER VAL PHE GLY ARG LEU SEQRES 4 A 488 LEU VAL ASN VAL SER ASP ILE ASP ILE ILE LYS SER HIS SEQRES 5 A 488 ARG TYR ALA ARG HIS ILE ILE SER LYS GLU LEU PRO LEU SEQRES 6 A 488 GLU SER SER LEU ASP ILE LEU ARG GLU LEU VAL ASP MET SEQRES 7 A 488 ASN LEU GLY THR ALA SER ILE ASP LEU GLY GLN LEU ALA SEQRES 8 A 488 TYR SER PHE GLU GLU SER GLU SER THR ASP LEU ARG ALA SEQRES 9 A 488 PHE LEU GLU ASP ALA LEU ALA PRO VAL ILE GLY ALA GLU SEQRES 10 A 488 THR ASP ILE ASN PRO THR ASP ILE VAL LEU TYR GLY PHE SEQRES 11 A 488 GLY ARG ILE GLY ARG LEU LEU ALA ARG ILE LEU VAL SER SEQRES 12 A 488 ARG GLU ALA LEU TYR ASP GLY ALA ARG LEU ARG ALA ILE SEQRES 13 A 488 VAL VAL ARG LYS ASN GLY GLU GLU ASP LEU VAL LYS ARG SEQRES 14 A 488 ALA SER LEU LEU ARG ARG ASP SER VAL HIS GLY GLY PHE SEQRES 15 A 488 ASP GLY THR ILE THR THR ASP TYR ASP ASN ASN ILE ILE SEQRES 16 A 488 TRP ALA ASN GLY THR PRO ILE LYS VAL ILE TYR SER ASN SEQRES 17 A 488 ASP PRO ALA THR ILE ASP TYR THR GLU TYR GLY ILE ASN SEQRES 18 A 488 ASP ALA VAL VAL VAL ASP ASN THR GLY ARG TRP ARG ASP SEQRES 19 A 488 ARG GLU GLY LEU SER GLN HIS LEU LYS SER LYS GLY VAL SEQRES 20 A 488 ALA LYS VAL VAL LEU THR ALA PRO GLY LYS GLY ASP LEU SEQRES 21 A 488 LYS ASN ILE VAL TYR GLY ILE ASN HIS THR ASP ILE THR SEQRES 22 A 488 ALA ASP ASP GLN ILE VAL SER ALA ALA SER CYS THR THR SEQRES 23 A 488 ASN ALA ILE THR PRO VAL LEU LYS VAL ILE ASN ASP ARG SEQRES 24 A 488 TYR GLY VAL GLU PHE GLY HIS VAL GLU THR VAL HIS SER SEQRES 25 A 488 PHE THR ASN ASP GLN ASN LEU ILE ASP ASN PHE HIS LYS SEQRES 26 A 488 GLY SER ARG ARG GLY ARG ALA ALA GLY LEU ASN MET VAL SEQRES 27 A 488 LEU THR GLU THR GLY ALA ALA LYS ALA VAL SER LYS ALA SEQRES 28 A 488 LEU PRO GLU LEU GLU GLY LYS LEU THR GLY ASN ALA ILE SEQRES 29 A 488 ARG VAL PRO THR PRO ASP VAL SER MET ALA VAL LEU ASN SEQRES 30 A 488 LEU THR LEU ASN THR GLU VAL ASP ARG ASP GLU VAL ASN SEQRES 31 A 488 GLU PHE LEU ARG ARG VAL SER LEU HIS SER ASP LEU ARG SEQRES 32 A 488 GLN GLN ILE ASP TRP ILE ARG SER PRO GLU VAL VAL SER SEQRES 33 A 488 THR ASP PHE VAL GLY THR THR HIS ALA GLY ILE VAL ASP SEQRES 34 A 488 GLY LEU ALA THR ILE ALA THR GLY ARG HIS LEU VAL LEU SEQRES 35 A 488 TYR VAL TRP TYR ASP ASN GLU PHE GLY TYR SER ASN GLN SEQRES 36 A 488 VAL ILE ARG ILE VAL GLU GLU ILE ALA GLY VAL ARG PRO SEQRES 37 A 488 ARG VAL TYR PRO GLU ARG ARG GLN PRO ALA VAL LEU LEU SEQRES 38 A 488 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 488 MET THR HIS ASN HIS LYS ASP TRP ASN ASP ARG ILE ALA SEQRES 2 B 488 VAL ALA GLU GLU MET VAL PRO LEU ILE GLY ARG LEU HIS SEQRES 3 B 488 ARG ASN ASN ASN VAL VAL VAL SER VAL PHE GLY ARG LEU SEQRES 4 B 488 LEU VAL ASN VAL SER ASP ILE ASP ILE ILE LYS SER HIS SEQRES 5 B 488 ARG TYR ALA ARG HIS ILE ILE SER LYS GLU LEU PRO LEU SEQRES 6 B 488 GLU SER SER LEU ASP ILE LEU ARG GLU LEU VAL ASP MET SEQRES 7 B 488 ASN LEU GLY THR ALA SER ILE ASP LEU GLY GLN LEU ALA SEQRES 8 B 488 TYR SER PHE GLU GLU SER GLU SER THR ASP LEU ARG ALA SEQRES 9 B 488 PHE LEU GLU ASP ALA LEU ALA PRO VAL ILE GLY ALA GLU SEQRES 10 B 488 THR ASP ILE ASN PRO THR ASP ILE VAL LEU TYR GLY PHE SEQRES 11 B 488 GLY ARG ILE GLY ARG LEU LEU ALA ARG ILE LEU VAL SER SEQRES 12 B 488 ARG GLU ALA LEU TYR ASP GLY ALA ARG LEU ARG ALA ILE SEQRES 13 B 488 VAL VAL ARG LYS ASN GLY GLU GLU ASP LEU VAL LYS ARG SEQRES 14 B 488 ALA SER LEU LEU ARG ARG ASP SER VAL HIS GLY GLY PHE SEQRES 15 B 488 ASP GLY THR ILE THR THR ASP TYR ASP ASN ASN ILE ILE SEQRES 16 B 488 TRP ALA ASN GLY THR PRO ILE LYS VAL ILE TYR SER ASN SEQRES 17 B 488 ASP PRO ALA THR ILE ASP TYR THR GLU TYR GLY ILE ASN SEQRES 18 B 488 ASP ALA VAL VAL VAL ASP ASN THR GLY ARG TRP ARG ASP SEQRES 19 B 488 ARG GLU GLY LEU SER GLN HIS LEU LYS SER LYS GLY VAL SEQRES 20 B 488 ALA LYS VAL VAL LEU THR ALA PRO GLY LYS GLY ASP LEU SEQRES 21 B 488 LYS ASN ILE VAL TYR GLY ILE ASN HIS THR ASP ILE THR SEQRES 22 B 488 ALA ASP ASP GLN ILE VAL SER ALA ALA SER CYS THR THR SEQRES 23 B 488 ASN ALA ILE THR PRO VAL LEU LYS VAL ILE ASN ASP ARG SEQRES 24 B 488 TYR GLY VAL GLU PHE GLY HIS VAL GLU THR VAL HIS SER SEQRES 25 B 488 PHE THR ASN ASP GLN ASN LEU ILE ASP ASN PHE HIS LYS SEQRES 26 B 488 GLY SER ARG ARG GLY ARG ALA ALA GLY LEU ASN MET VAL SEQRES 27 B 488 LEU THR GLU THR GLY ALA ALA LYS ALA VAL SER LYS ALA SEQRES 28 B 488 LEU PRO GLU LEU GLU GLY LYS LEU THR GLY ASN ALA ILE SEQRES 29 B 488 ARG VAL PRO THR PRO ASP VAL SER MET ALA VAL LEU ASN SEQRES 30 B 488 LEU THR LEU ASN THR GLU VAL ASP ARG ASP GLU VAL ASN SEQRES 31 B 488 GLU PHE LEU ARG ARG VAL SER LEU HIS SER ASP LEU ARG SEQRES 32 B 488 GLN GLN ILE ASP TRP ILE ARG SER PRO GLU VAL VAL SER SEQRES 33 B 488 THR ASP PHE VAL GLY THR THR HIS ALA GLY ILE VAL ASP SEQRES 34 B 488 GLY LEU ALA THR ILE ALA THR GLY ARG HIS LEU VAL LEU SEQRES 35 B 488 TYR VAL TRP TYR ASP ASN GLU PHE GLY TYR SER ASN GLN SEQRES 36 B 488 VAL ILE ARG ILE VAL GLU GLU ILE ALA GLY VAL ARG PRO SEQRES 37 B 488 ARG VAL TYR PRO GLU ARG ARG GLN PRO ALA VAL LEU LEU SEQRES 38 B 488 GLU HIS HIS HIS HIS HIS HIS HET NAP A 501 48 HET GOL A 502 6 HET NAP B 501 48 HET GOL B 502 6 HET GOL B 503 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *130(H2 O) HELIX 1 AA1 ASP A 7 ASN A 30 1 24 HELIX 2 AA2 SER A 44 TYR A 54 1 11 HELIX 3 AA3 ALA A 55 HIS A 57 5 3 HELIX 4 AA4 PRO A 64 VAL A 76 1 13 HELIX 5 AA5 LEU A 87 GLU A 96 1 10 HELIX 6 AA6 ASP A 101 LEU A 106 1 6 HELIX 7 AA7 GLY A 131 TYR A 148 1 18 HELIX 8 AA8 GLU A 164 ARG A 175 1 12 HELIX 9 AA9 ASP A 214 GLY A 219 5 6 HELIX 10 AB1 ASP A 234 SER A 239 1 6 HELIX 11 AB2 SER A 239 SER A 244 1 6 HELIX 12 AB3 ASN A 268 ILE A 272 5 5 HELIX 13 AB4 SER A 283 TYR A 300 1 18 HELIX 14 AB5 GLY A 343 LEU A 352 1 10 HELIX 15 AB6 PRO A 353 GLU A 356 5 4 HELIX 16 AB7 ASP A 385 SER A 400 1 16 HELIX 17 AB8 VAL A 415 VAL A 420 5 6 HELIX 18 AB9 LEU A 431 THR A 433 5 3 HELIX 19 AC1 GLU A 449 GLY A 465 1 17 HELIX 20 AC2 ASP B 7 ASN B 28 1 22 HELIX 21 AC3 SER B 44 TYR B 54 1 11 HELIX 22 AC4 ALA B 55 ILE B 58 5 4 HELIX 23 AC5 PRO B 64 GLU B 74 1 11 HELIX 24 AC6 GLY B 88 GLU B 96 1 9 HELIX 25 AC7 ASP B 101 LEU B 110 1 10 HELIX 26 AC8 GLY B 131 ALA B 146 1 16 HELIX 27 AC9 GLU B 164 ARG B 175 1 12 HELIX 28 AD1 ASP B 214 GLY B 219 5 6 HELIX 29 AD2 ASP B 234 SER B 239 1 6 HELIX 30 AD3 GLN B 240 SER B 244 5 5 HELIX 31 AD4 ASN B 268 ILE B 272 5 5 HELIX 32 AD5 SER B 283 TYR B 300 1 18 HELIX 33 AD6 GLY B 343 LEU B 352 1 10 HELIX 34 AD7 PRO B 353 GLU B 356 5 4 HELIX 35 AD8 ASP B 385 SER B 400 1 16 HELIX 36 AD9 VAL B 415 VAL B 420 5 6 HELIX 37 AE1 GLU B 449 GLY B 465 1 17 SHEET 1 AA1 3 VAL A 31 SER A 34 0 SHEET 2 AA1 3 ALA A 83 ASP A 86 1 O ALA A 83 N VAL A 32 SHEET 3 AA1 3 VAL A 470 TYR A 471 1 O TYR A 471 N ASP A 86 SHEET 1 AA2 8 ILE A 186 ASP A 189 0 SHEET 2 AA2 8 ILE A 194 ALA A 197 -1 O TRP A 196 N THR A 187 SHEET 3 AA2 8 THR A 200 TYR A 206 -1 O ILE A 202 N ILE A 195 SHEET 4 AA2 8 ALA A 151 VAL A 158 1 N ILE A 156 O ILE A 205 SHEET 5 AA2 8 THR A 123 TYR A 128 1 N ILE A 125 O ARG A 154 SHEET 6 AA2 8 ALA A 223 ASP A 227 1 O VAL A 226 N VAL A 126 SHEET 7 AA2 8 VAL A 247 LEU A 252 1 O VAL A 251 N VAL A 225 SHEET 8 AA2 8 ILE A 278 SER A 280 1 O VAL A 279 N VAL A 250 SHEET 1 AA3 7 VAL A 338 THR A 340 0 SHEET 2 AA3 7 LEU A 359 ARG A 365 -1 O ALA A 363 N THR A 340 SHEET 3 AA3 7 VAL A 302 HIS A 311 1 N THR A 309 O ILE A 364 SHEET 4 AA3 7 SER A 372 LEU A 380 -1 O MET A 373 N VAL A 310 SHEET 5 AA3 7 HIS A 439 TYR A 446 -1 O VAL A 444 N ALA A 374 SHEET 6 AA3 7 GLY A 426 ASP A 429 -1 N ILE A 427 O TRP A 445 SHEET 7 AA3 7 ILE A 406 ILE A 409 1 N ASP A 407 O VAL A 428 SHEET 1 AA4 6 VAL A 338 THR A 340 0 SHEET 2 AA4 6 LEU A 359 ARG A 365 -1 O ALA A 363 N THR A 340 SHEET 3 AA4 6 VAL A 302 HIS A 311 1 N THR A 309 O ILE A 364 SHEET 4 AA4 6 SER A 372 LEU A 380 -1 O MET A 373 N VAL A 310 SHEET 5 AA4 6 HIS A 439 TYR A 446 -1 O VAL A 444 N ALA A 374 SHEET 6 AA4 6 ILE A 434 THR A 436 -1 N ILE A 434 O VAL A 441 SHEET 1 AA5 4 ARG B 38 LEU B 39 0 SHEET 2 AA5 4 VAL B 31 VAL B 35 -1 N VAL B 35 O ARG B 38 SHEET 3 AA5 4 ALA B 83 ASP B 86 1 O ILE B 85 N SER B 34 SHEET 4 AA5 4 VAL B 470 TYR B 471 1 O TYR B 471 N SER B 84 SHEET 1 AA6 8 ILE B 186 ASP B 189 0 SHEET 2 AA6 8 ILE B 194 ALA B 197 -1 O TRP B 196 N THR B 187 SHEET 3 AA6 8 THR B 200 TYR B 206 -1 O ILE B 202 N ILE B 195 SHEET 4 AA6 8 ALA B 151 VAL B 158 1 N ILE B 156 O ILE B 205 SHEET 5 AA6 8 THR B 123 TYR B 128 1 N ILE B 125 O ARG B 152 SHEET 6 AA6 8 ALA B 223 ASP B 227 1 O VAL B 226 N VAL B 126 SHEET 7 AA6 8 VAL B 247 LEU B 252 1 O LYS B 249 N VAL B 225 SHEET 8 AA6 8 ILE B 278 SER B 280 1 O VAL B 279 N VAL B 250 SHEET 1 AA7 7 VAL B 338 THR B 340 0 SHEET 2 AA7 7 LEU B 359 VAL B 366 -1 O ARG B 365 N VAL B 338 SHEET 3 AA7 7 VAL B 302 SER B 312 1 N THR B 309 O ILE B 364 SHEET 4 AA7 7 SER B 372 LEU B 380 -1 O THR B 379 N PHE B 304 SHEET 5 AA7 7 HIS B 439 TYR B 446 -1 O LEU B 440 N LEU B 378 SHEET 6 AA7 7 ILE B 427 THR B 436 -1 N ILE B 427 O TRP B 445 SHEET 7 AA7 7 ASP B 407 ILE B 409 1 N ILE B 409 O GLY B 430 CISPEP 1 THR A 100 ASP A 101 0 14.18 CISPEP 2 TYR A 471 PRO A 472 0 -7.91 CISPEP 3 SER B 97 GLU B 98 0 -0.27 CISPEP 4 THR B 100 ASP B 101 0 6.26 CISPEP 5 TYR B 471 PRO B 472 0 -0.96 CRYST1 92.754 92.754 287.554 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003478 0.00000