HEADER HYDROLASE 09-MAY-23 8JBN TITLE VASCULAR ENDOTHELIAL PROTEIN TYROSINE PHOSPHATASE IN COMPLEX WITH CPD- TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE BETA,R-PTP-BETA,VASCULAR COMPND 5 ENDOTHELIAL PROTEIN TYROSINE PHOSPHATASE,VE-PTP; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRB, PTPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TYROSINE PHOSPHATASE, FBDD, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ORITA,T.FURUZONO,S.DOI,T.ADACHI REVDAT 1 28-FEB-24 8JBN 0 JRNL AUTH W.ASANO,K.YAMANAKA,Y.OHARA,T.UHARA,S.DOI,T.ORITA,T.IWANAGA, JRNL AUTH 2 T.ADACHI,S.FUJIOKA,T.AKAKI,K.IKEGASHIRA,Y.HANTANI JRNL TITL FRAGMENT-BASED DISCOVERY OF NOVEL VE-PTP INHIBITORS USING JRNL TITL 2 ORTHOGONAL BIOPHYSICAL TECHNIQUES. JRNL REF BIOCHEMISTRY V. 62 2161 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37414577 JRNL DOI 10.1021/ACS.BIOCHEM.3C00079 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 104165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.4600 - 6.1800 0.99 3279 197 0.2046 0.2213 REMARK 3 2 6.1800 - 4.9100 1.00 3353 140 0.1606 0.2168 REMARK 3 3 4.9100 - 4.2900 0.99 3245 191 0.1290 0.1382 REMARK 3 4 4.2900 - 3.9000 1.00 3348 154 0.1325 0.1436 REMARK 3 5 3.8900 - 3.6200 1.00 3326 164 0.1462 0.1684 REMARK 3 6 3.6200 - 3.4000 1.00 3345 149 0.1580 0.1808 REMARK 3 7 3.4000 - 3.2300 1.00 3340 148 0.1722 0.1993 REMARK 3 8 3.2300 - 3.0900 0.99 3289 145 0.1592 0.2009 REMARK 3 9 3.0900 - 2.9700 1.00 3322 188 0.1658 0.1858 REMARK 3 10 2.9700 - 2.8700 1.00 3285 173 0.1669 0.1882 REMARK 3 11 2.8700 - 2.7800 1.00 3325 189 0.1789 0.2172 REMARK 3 12 2.7800 - 2.7000 1.00 3302 171 0.1769 0.1865 REMARK 3 13 2.7000 - 2.6300 1.00 3324 155 0.1696 0.2593 REMARK 3 14 2.6300 - 2.5700 1.00 3324 163 0.1818 0.2070 REMARK 3 15 2.5700 - 2.5100 1.00 3350 141 0.1696 0.2083 REMARK 3 16 2.5100 - 2.4500 1.00 3296 193 0.1627 0.2131 REMARK 3 17 2.4500 - 2.4000 0.99 3289 173 0.1774 0.2423 REMARK 3 18 2.4000 - 2.3600 0.99 3267 187 0.1809 0.1890 REMARK 3 19 2.3600 - 2.3200 1.00 3316 157 0.1766 0.2157 REMARK 3 20 2.3200 - 2.2800 1.00 3305 186 0.1792 0.2018 REMARK 3 21 2.2800 - 2.2400 1.00 3226 197 0.1851 0.1969 REMARK 3 22 2.2400 - 2.2100 1.00 3271 223 0.1896 0.2485 REMARK 3 23 2.2100 - 2.1700 1.00 3284 179 0.2090 0.2827 REMARK 3 24 2.1700 - 2.1400 0.99 3307 180 0.2191 0.2459 REMARK 3 25 2.1400 - 2.1100 1.00 3290 172 0.2356 0.2675 REMARK 3 26 2.1100 - 2.0900 0.99 3280 159 0.2264 0.2831 REMARK 3 27 2.0900 - 2.0600 0.99 3264 193 0.2334 0.2872 REMARK 3 28 2.0600 - 2.0400 0.99 3292 183 0.2392 0.2712 REMARK 3 29 2.0400 - 2.0100 0.99 3316 146 0.2601 0.2747 REMARK 3 30 2.0100 - 1.9900 0.99 3207 202 0.2673 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.742 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4739 REMARK 3 ANGLE : 0.580 6439 REMARK 3 CHIRALITY : 0.044 685 REMARK 3 PLANARITY : 0.005 843 REMARK 3 DIHEDRAL : 11.124 1772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1687 THROUGH 1710 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6955 84.5439 -6.8472 REMARK 3 T TENSOR REMARK 3 T11: 0.4900 T22: 0.5203 REMARK 3 T33: 0.4898 T12: -0.0499 REMARK 3 T13: -0.0112 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.5898 L22: 0.5877 REMARK 3 L33: 0.7133 L12: 0.2038 REMARK 3 L13: -0.4239 L23: -0.6077 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.2064 S13: 0.4348 REMARK 3 S21: 0.3852 S22: 0.0569 S23: -0.1227 REMARK 3 S31: -0.6257 S32: 0.4102 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1711 THROUGH 1782 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5534 56.2126 5.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.4120 REMARK 3 T33: 0.3081 T12: -0.0019 REMARK 3 T13: -0.0503 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 3.2514 L22: 1.5167 REMARK 3 L33: 2.5105 L12: 0.2676 REMARK 3 L13: -1.0957 L23: 0.7389 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.3663 S13: -0.3822 REMARK 3 S21: 0.2669 S22: -0.1282 S23: -0.2287 REMARK 3 S31: 0.3048 S32: 0.0535 S33: -0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1783 THROUGH 1810 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4032 61.6413 9.0218 REMARK 3 T TENSOR REMARK 3 T11: 0.3189 T22: 0.4919 REMARK 3 T33: 0.3111 T12: -0.0812 REMARK 3 T13: 0.0190 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 1.7365 L22: 2.2530 REMARK 3 L33: 0.6275 L12: 0.1342 REMARK 3 L13: -0.9540 L23: 0.4162 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.1658 S13: -0.1850 REMARK 3 S21: -0.0920 S22: -0.1539 S23: 0.3400 REMARK 3 S31: 0.2613 S32: -0.1812 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1811 THROUGH 1968 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6433 72.3753 9.1656 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.4768 REMARK 3 T33: 0.3119 T12: -0.0204 REMARK 3 T13: 0.0305 T23: -0.1334 REMARK 3 L TENSOR REMARK 3 L11: 2.5713 L22: 2.2242 REMARK 3 L33: 2.7807 L12: 1.1791 REMARK 3 L13: -0.8205 L23: -0.3134 REMARK 3 S TENSOR REMARK 3 S11: 0.2248 S12: -0.3834 S13: 0.2341 REMARK 3 S21: 0.3021 S22: -0.2371 S23: 0.3146 REMARK 3 S31: -0.1710 S32: -0.1776 S33: -0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1696 THROUGH 1720 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9981 25.4338 6.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.7005 T22: 0.7387 REMARK 3 T33: 0.8543 T12: 0.2171 REMARK 3 T13: -0.0651 T23: 0.0969 REMARK 3 L TENSOR REMARK 3 L11: 0.2502 L22: 0.6384 REMARK 3 L33: 0.6084 L12: 0.1859 REMARK 3 L13: 0.1046 L23: 0.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.6191 S13: -0.5649 REMARK 3 S21: 0.8615 S22: 0.0028 S23: -0.5284 REMARK 3 S31: 0.2025 S32: 0.7876 S33: -0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1721 THROUGH 1740 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8766 45.4005 -3.1888 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.4628 REMARK 3 T33: 0.3544 T12: -0.0289 REMARK 3 T13: 0.0046 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.5552 L22: 0.3723 REMARK 3 L33: 0.3618 L12: 0.2604 REMARK 3 L13: -0.0544 L23: 0.2738 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1830 S13: -0.1403 REMARK 3 S21: -0.2810 S22: 0.2458 S23: -0.2494 REMARK 3 S31: -0.0431 S32: 0.3136 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1741 THROUGH 1763 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1918 43.6375 -12.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.3581 T22: 0.4968 REMARK 3 T33: 0.4296 T12: -0.0281 REMARK 3 T13: -0.0283 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0752 L22: 0.5284 REMARK 3 L33: 0.7976 L12: -0.1747 REMARK 3 L13: -0.0554 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.5102 S13: 0.2286 REMARK 3 S21: -0.5644 S22: -0.0983 S23: 0.0357 REMARK 3 S31: -0.1715 S32: 0.3010 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1764 THROUGH 1810 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0543 39.8118 -1.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.3380 REMARK 3 T33: 0.2929 T12: -0.0088 REMARK 3 T13: -0.0177 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.7165 L22: 2.0178 REMARK 3 L33: 2.1752 L12: 0.2276 REMARK 3 L13: -0.3972 L23: -0.4517 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.1635 S13: -0.1110 REMARK 3 S21: 0.1111 S22: 0.0211 S23: -0.0580 REMARK 3 S31: 0.0930 S32: 0.0189 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1811 THROUGH 1850 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0141 46.4477 1.2288 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.4416 REMARK 3 T33: 0.4032 T12: -0.0225 REMARK 3 T13: 0.0321 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.1937 L22: 1.2601 REMARK 3 L33: 1.0690 L12: -0.0912 REMARK 3 L13: -0.4210 L23: 0.9112 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: -0.3902 S13: 0.2726 REMARK 3 S21: 0.1743 S22: -0.1035 S23: 0.2137 REMARK 3 S31: -0.2446 S32: -0.1665 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1851 THROUGH 1892 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3230 34.6944 3.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.3323 T22: 0.4424 REMARK 3 T33: 0.4336 T12: -0.0978 REMARK 3 T13: 0.0508 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 2.6196 L22: 2.0249 REMARK 3 L33: 1.6484 L12: -0.3505 REMARK 3 L13: -0.3430 L23: 1.2528 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.2666 S13: -0.2634 REMARK 3 S21: 0.2989 S22: -0.0147 S23: 0.1387 REMARK 3 S31: 0.4241 S32: -0.1302 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1893 THROUGH 1926 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1246 28.3806 1.4471 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.3723 REMARK 3 T33: 0.4486 T12: -0.0548 REMARK 3 T13: -0.0328 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: 0.8300 L22: 0.7639 REMARK 3 L33: 1.3533 L12: -0.3953 REMARK 3 L13: -0.5910 L23: -0.4535 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.1605 S13: -0.4788 REMARK 3 S21: -0.0588 S22: 0.0341 S23: 0.1039 REMARK 3 S31: 0.7110 S32: -0.0299 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1927 THROUGH 1949 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9209 24.6300 2.7711 REMARK 3 T TENSOR REMARK 3 T11: 0.6236 T22: 0.4399 REMARK 3 T33: 0.7015 T12: 0.1020 REMARK 3 T13: 0.0331 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 0.5246 L22: 0.0376 REMARK 3 L33: 0.6720 L12: -0.0998 REMARK 3 L13: -0.1225 L23: -0.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.2234 S12: -0.3306 S13: -0.7711 REMARK 3 S21: 0.4530 S22: 0.1669 S23: -0.0828 REMARK 3 S31: 0.7214 S32: 0.2986 S33: 0.0196 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1950 THROUGH 1968 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3561 19.4872 14.2733 REMARK 3 T TENSOR REMARK 3 T11: 0.9889 T22: 0.6487 REMARK 3 T33: 0.6495 T12: -0.0387 REMARK 3 T13: -0.0805 T23: 0.2692 REMARK 3 L TENSOR REMARK 3 L11: 0.3527 L22: 0.2344 REMARK 3 L33: 0.1803 L12: -0.0819 REMARK 3 L13: -0.2509 L23: 0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: -0.4748 S13: -0.3503 REMARK 3 S21: 0.7433 S22: -0.1093 S23: 0.0079 REMARK 3 S31: 1.0063 S32: 0.0788 S33: 0.0133 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300034752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 91.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 19.50 REMARK 200 R MERGE FOR SHELL (I) : 3.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 9.5%(V/V) PEG 6000, REMARK 280 8.8%(V/V) ETHYLENE GLYCOL, SOAKING THE CRYSTAL WITH 6.25 MM CPD- REMARK 280 1, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.63633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.27267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.45450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 149.09083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.81817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.63633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 119.27267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.09083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.45450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.81817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A6237 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1677 REMARK 465 PRO A 1678 REMARK 465 LEU A 1679 REMARK 465 GLY A 1680 REMARK 465 SER A 1681 REMARK 465 PRO A 1682 REMARK 465 GLY A 1683 REMARK 465 ILE A 1684 REMARK 465 PRO A 1685 REMARK 465 ASN A 1686 REMARK 465 LEU A 1969 REMARK 465 ARG A 1970 REMARK 465 SER A 1971 REMARK 465 GLY B 1677 REMARK 465 PRO B 1678 REMARK 465 LEU B 1679 REMARK 465 GLY B 1680 REMARK 465 SER B 1681 REMARK 465 PRO B 1682 REMARK 465 GLY B 1683 REMARK 465 ILE B 1684 REMARK 465 PRO B 1685 REMARK 465 ASN B 1686 REMARK 465 GLN B 1687 REMARK 465 PHE B 1688 REMARK 465 GLU B 1689 REMARK 465 GLY B 1690 REMARK 465 HIS B 1691 REMARK 465 PHE B 1692 REMARK 465 MET B 1693 REMARK 465 LYS B 1694 REMARK 465 LEU B 1695 REMARK 465 LEU B 1969 REMARK 465 ARG B 1970 REMARK 465 SER B 1971 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1770 63.38 -117.38 REMARK 500 SER A1894 70.61 -113.58 REMARK 500 CYS A1904 -125.43 -126.38 REMARK 500 VAL A1908 -51.43 -134.87 REMARK 500 SER A1926 -78.07 -93.25 REMARK 500 VAL A1947 85.87 59.13 REMARK 500 CYS B1754 -2.51 82.89 REMARK 500 ARG B1770 54.51 -114.66 REMARK 500 ASP B1819 -157.37 -113.56 REMARK 500 CYS B1904 -128.46 -124.65 REMARK 500 VAL B1908 -52.33 -136.88 REMARK 500 HIS B1945 15.62 57.79 REMARK 500 VAL B1947 92.26 66.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 8JBN A 1686 1971 UNP P23467 PTPRB_HUMAN 1686 1971 DBREF 8JBN B 1686 1971 UNP P23467 PTPRB_HUMAN 1686 1971 SEQADV 8JBN GLY A 1677 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO A 1678 UNP P23467 EXPRESSION TAG SEQADV 8JBN LEU A 1679 UNP P23467 EXPRESSION TAG SEQADV 8JBN GLY A 1680 UNP P23467 EXPRESSION TAG SEQADV 8JBN SER A 1681 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO A 1682 UNP P23467 EXPRESSION TAG SEQADV 8JBN GLY A 1683 UNP P23467 EXPRESSION TAG SEQADV 8JBN ILE A 1684 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO A 1685 UNP P23467 EXPRESSION TAG SEQADV 8JBN GLY B 1677 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO B 1678 UNP P23467 EXPRESSION TAG SEQADV 8JBN LEU B 1679 UNP P23467 EXPRESSION TAG SEQADV 8JBN GLY B 1680 UNP P23467 EXPRESSION TAG SEQADV 8JBN SER B 1681 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO B 1682 UNP P23467 EXPRESSION TAG SEQADV 8JBN GLY B 1683 UNP P23467 EXPRESSION TAG SEQADV 8JBN ILE B 1684 UNP P23467 EXPRESSION TAG SEQADV 8JBN PRO B 1685 UNP P23467 EXPRESSION TAG SEQRES 1 A 295 GLY PRO LEU GLY SER PRO GLY ILE PRO ASN GLN PHE GLU SEQRES 2 A 295 GLY HIS PHE MET LYS LEU GLN ALA ASP SER ASN TYR LEU SEQRES 3 A 295 LEU SER LYS GLU TYR GLU GLU LEU LYS ASP VAL GLY ARG SEQRES 4 A 295 ASN GLN SER CYS ASP ILE ALA LEU LEU PRO GLU ASN ARG SEQRES 5 A 295 GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO TYR ASP ALA SEQRES 6 A 295 THR ARG VAL LYS LEU SER ASN VAL ASP ASP ASP PRO CYS SEQRES 7 A 295 SER ASP TYR ILE ASN ALA SER TYR ILE PRO GLY ASN ASN SEQRES 8 A 295 PHE ARG ARG GLU TYR ILE VAL THR GLN GLY PRO LEU PRO SEQRES 9 A 295 GLY THR LYS ASP ASP PHE TRP LYS MET VAL TRP GLU GLN SEQRES 10 A 295 ASN VAL HIS ASN ILE VAL MET VAL THR GLN CYS VAL GLU SEQRES 11 A 295 LYS GLY ARG VAL LYS CYS ASP HIS TYR TRP PRO ALA ASP SEQRES 12 A 295 GLN ASP SER LEU TYR TYR GLY ASP LEU ILE LEU GLN MET SEQRES 13 A 295 LEU SER GLU SER VAL LEU PRO GLU TRP THR ILE ARG GLU SEQRES 14 A 295 PHE LYS ILE CYS GLY GLU GLU GLN LEU ASP ALA HIS ARG SEQRES 15 A 295 LEU ILE ARG HIS PHE HIS TYR THR VAL TRP PRO ASP HIS SEQRES 16 A 295 GLY VAL PRO GLU THR THR GLN SER LEU ILE GLN PHE VAL SEQRES 17 A 295 ARG THR VAL ARG ASP TYR ILE ASN ARG SER PRO GLY ALA SEQRES 18 A 295 GLY PRO THR VAL VAL HIS CYS SER ALA GLY VAL GLY ARG SEQRES 19 A 295 THR GLY THR PHE ILE ALA LEU ASP ARG ILE LEU GLN GLN SEQRES 20 A 295 LEU ASP SER LYS ASP SER VAL ASP ILE TYR GLY ALA VAL SEQRES 21 A 295 HIS ASP LEU ARG LEU HIS ARG VAL HIS MET VAL GLN THR SEQRES 22 A 295 GLU CYS GLN TYR VAL TYR LEU HIS GLN CYS VAL ARG ASP SEQRES 23 A 295 VAL LEU ARG ALA ARG LYS LEU ARG SER SEQRES 1 B 295 GLY PRO LEU GLY SER PRO GLY ILE PRO ASN GLN PHE GLU SEQRES 2 B 295 GLY HIS PHE MET LYS LEU GLN ALA ASP SER ASN TYR LEU SEQRES 3 B 295 LEU SER LYS GLU TYR GLU GLU LEU LYS ASP VAL GLY ARG SEQRES 4 B 295 ASN GLN SER CYS ASP ILE ALA LEU LEU PRO GLU ASN ARG SEQRES 5 B 295 GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO TYR ASP ALA SEQRES 6 B 295 THR ARG VAL LYS LEU SER ASN VAL ASP ASP ASP PRO CYS SEQRES 7 B 295 SER ASP TYR ILE ASN ALA SER TYR ILE PRO GLY ASN ASN SEQRES 8 B 295 PHE ARG ARG GLU TYR ILE VAL THR GLN GLY PRO LEU PRO SEQRES 9 B 295 GLY THR LYS ASP ASP PHE TRP LYS MET VAL TRP GLU GLN SEQRES 10 B 295 ASN VAL HIS ASN ILE VAL MET VAL THR GLN CYS VAL GLU SEQRES 11 B 295 LYS GLY ARG VAL LYS CYS ASP HIS TYR TRP PRO ALA ASP SEQRES 12 B 295 GLN ASP SER LEU TYR TYR GLY ASP LEU ILE LEU GLN MET SEQRES 13 B 295 LEU SER GLU SER VAL LEU PRO GLU TRP THR ILE ARG GLU SEQRES 14 B 295 PHE LYS ILE CYS GLY GLU GLU GLN LEU ASP ALA HIS ARG SEQRES 15 B 295 LEU ILE ARG HIS PHE HIS TYR THR VAL TRP PRO ASP HIS SEQRES 16 B 295 GLY VAL PRO GLU THR THR GLN SER LEU ILE GLN PHE VAL SEQRES 17 B 295 ARG THR VAL ARG ASP TYR ILE ASN ARG SER PRO GLY ALA SEQRES 18 B 295 GLY PRO THR VAL VAL HIS CYS SER ALA GLY VAL GLY ARG SEQRES 19 B 295 THR GLY THR PHE ILE ALA LEU ASP ARG ILE LEU GLN GLN SEQRES 20 B 295 LEU ASP SER LYS ASP SER VAL ASP ILE TYR GLY ALA VAL SEQRES 21 B 295 HIS ASP LEU ARG LEU HIS ARG VAL HIS MET VAL GLN THR SEQRES 22 B 295 GLU CYS GLN TYR VAL TYR LEU HIS GLN CYS VAL ARG ASP SEQRES 23 B 295 VAL LEU ARG ALA ARG LYS LEU ARG SER HET EDO A6000 10 HET EDO A6001 10 HET EDO A6002 10 HET U7C B2001 23 HET EPE B2002 32 HETNAM EDO 1,2-ETHANEDIOL HETNAM U7C 5-(1~{H}-INDOL-3-YL)-1,2-OXAZOLE-3-CARBOXYLIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN EPE HEPES FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 U7C C12 H8 N2 O3 FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 HOH *371(H2 O) HELIX 1 AA1 GLN A 1687 LEU A 1710 1 24 HELIX 2 AA2 LEU A 1724 ASN A 1731 5 8 HELIX 3 AA3 LEU A 1779 GLY A 1781 5 3 HELIX 4 AA4 THR A 1782 GLN A 1793 1 12 HELIX 5 AA5 THR A 1876 SER A 1894 1 19 HELIX 6 AA6 VAL A 1908 SER A 1926 1 19 HELIX 7 AA7 ASP A 1931 ARG A 1943 1 13 HELIX 8 AA8 THR A 1949 LYS A 1968 1 20 HELIX 9 AA9 ALA B 1697 LEU B 1710 1 14 HELIX 10 AB1 ASP B 1720 ASN B 1731 5 12 HELIX 11 AB2 THR B 1782 GLN B 1793 1 12 HELIX 12 AB3 THR B 1876 ARG B 1893 1 18 HELIX 13 AB4 VAL B 1908 LYS B 1927 1 20 HELIX 14 AB5 ASP B 1931 ARG B 1943 1 13 HELIX 15 AB6 THR B 1949 LYS B 1968 1 20 SHEET 1 AA1 9 ARG A1743 LYS A1745 0 SHEET 2 AA1 9 TYR A1757 ILE A1763 -1 O ALA A1760 N VAL A1744 SHEET 3 AA1 9 TYR A1772 THR A1775 -1 O TYR A1772 N ILE A1763 SHEET 4 AA1 9 THR A1900 HIS A1903 1 O VAL A1902 N ILE A1773 SHEET 5 AA1 9 ASN A1797 MET A1800 1 N VAL A1799 O VAL A1901 SHEET 6 AA1 9 ARG A1858 TYR A1865 1 O PHE A1863 N ILE A1798 SHEET 7 AA1 9 TRP A1841 GLY A1850 -1 N PHE A1846 O ILE A1860 SHEET 8 AA1 9 LEU A1828 VAL A1837 -1 N ILE A1829 O CYS A1849 SHEET 9 AA1 9 LEU A1823 TYR A1825 -1 N LEU A1823 O LEU A1830 SHEET 1 AA2 2 VAL A1805 GLU A1806 0 SHEET 2 AA2 2 ARG A1809 VAL A1810 -1 O ARG A1809 N GLU A1806 SHEET 1 AA3 9 ARG B1743 LYS B1745 0 SHEET 2 AA3 9 TYR B1757 ILE B1763 -1 O ALA B1760 N VAL B1744 SHEET 3 AA3 9 TYR B1772 THR B1775 -1 O TYR B1772 N ILE B1763 SHEET 4 AA3 9 THR B1900 HIS B1903 1 O THR B1900 N ILE B1773 SHEET 5 AA3 9 ASN B1797 MET B1800 1 N VAL B1799 O VAL B1901 SHEET 6 AA3 9 ARG B1858 TYR B1865 1 O PHE B1863 N ILE B1798 SHEET 7 AA3 9 TRP B1841 GLY B1850 -1 N THR B1842 O HIS B1864 SHEET 8 AA3 9 LEU B1828 VAL B1837 -1 N GLN B1831 O LYS B1847 SHEET 9 AA3 9 LEU B1823 TYR B1825 -1 N LEU B1823 O LEU B1830 SHEET 1 AA4 2 VAL B1805 GLU B1806 0 SHEET 2 AA4 2 ARG B1809 VAL B1810 -1 O ARG B1809 N GLU B1806 CRYST1 123.467 123.467 178.909 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008099 0.004676 0.000000 0.00000 SCALE2 0.000000 0.009352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005589 0.00000