HEADER TOXIN 09-MAY-23 8JBQ TITLE PRO-ALPHA-HEMOLYSIN OF VIBRIO CAMPBELLII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-HEMOLYSIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CAMPBELLII; SOURCE 3 ORGANISM_TAXID: 680; SOURCE 4 GENE: DSB67_23490; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSSETTA-GAMI 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS HEMOLYSIN, PORE FORMING TOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.LIN,Y.A.CHEN,Y.C.CHIU REVDAT 3 06-NOV-24 8JBQ 1 REMARK REVDAT 2 04-OCT-23 8JBQ 1 JRNL REVDAT 1 27-SEP-23 8JBQ 0 JRNL AUTH Y.C.CHIU,M.C.YEH,C.H.WANG,Y.A.CHEN,H.CHANG,H.Y.LIN,M.C.HO, JRNL AUTH 2 S.M.LIN JRNL TITL STRUCTURAL BASIS FOR CALCIUM-STIMULATING PORE FORMATION OF JRNL TITL 2 VIBRIO ALPHA-HEMOLYSIN. JRNL REF NAT COMMUN V. 14 5946 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37741869 JRNL DOI 10.1038/S41467-023-41579-X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.540 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5500 - 4.8100 1.00 5825 153 0.1743 0.1828 REMARK 3 2 4.8100 - 3.8200 1.00 5590 145 0.1392 0.1432 REMARK 3 3 3.8200 - 3.3400 1.00 5521 144 0.1640 0.1880 REMARK 3 4 3.3400 - 3.0400 1.00 5473 143 0.1763 0.1925 REMARK 3 5 3.0400 - 2.8200 1.00 5480 143 0.1909 0.2041 REMARK 3 6 2.8200 - 2.6500 1.00 5435 142 0.1910 0.2075 REMARK 3 7 2.6500 - 2.5200 1.00 5451 143 0.2027 0.2432 REMARK 3 8 2.5200 - 2.4100 1.00 5415 140 0.1980 0.2110 REMARK 3 9 2.4100 - 2.3200 1.00 5395 142 0.1979 0.2352 REMARK 3 10 2.3200 - 2.2400 1.00 5399 141 0.2034 0.2398 REMARK 3 11 2.2400 - 2.1700 1.00 5374 140 0.2058 0.2144 REMARK 3 12 2.1700 - 2.1100 1.00 5350 140 0.2246 0.2385 REMARK 3 13 2.1100 - 2.0500 1.00 5386 140 0.2278 0.2811 REMARK 3 14 2.0500 - 2.0000 1.00 5387 141 0.2423 0.2423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.181 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.758 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5609 REMARK 3 ANGLE : 0.474 7634 REMARK 3 CHIRALITY : 0.042 828 REMARK 3 PLANARITY : 0.003 1012 REMARK 3 DIHEDRAL : 18.899 772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -72.1638 25.1938 -21.0227 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.2415 REMARK 3 T33: 0.1867 T12: -0.0194 REMARK 3 T13: 0.0036 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 5.6387 L22: 2.7302 REMARK 3 L33: 5.2122 L12: -2.5009 REMARK 3 L13: 1.1971 L23: -0.5937 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: 0.4588 S13: -0.1727 REMARK 3 S21: -0.3348 S22: -0.0693 S23: 0.1995 REMARK 3 S31: 0.4343 S32: -0.2656 S33: -0.0369 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -69.8421 35.9852 7.8482 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1507 REMARK 3 T33: 0.1314 T12: -0.0127 REMARK 3 T13: 0.0108 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2674 L22: 2.4095 REMARK 3 L33: 0.8900 L12: -0.2155 REMARK 3 L13: -0.0857 L23: 0.9164 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0004 S13: 0.0075 REMARK 3 S21: 0.1448 S22: -0.0375 S23: -0.0014 REMARK 3 S31: 0.1781 S32: 0.0442 S33: 0.0125 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 602 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.4096 -3.6997 -16.6655 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.1580 REMARK 3 T33: 0.1720 T12: 0.0690 REMARK 3 T13: -0.0028 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.6496 L22: 4.1179 REMARK 3 L33: 1.9930 L12: 0.5076 REMARK 3 L13: -0.0537 L23: 0.9748 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0195 S13: 0.1197 REMARK 3 S21: 0.0230 S22: 0.0034 S23: -0.0783 REMARK 3 S31: -0.1146 S32: 0.0185 S33: 0.0070 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 603 THROUGH 713 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7982 1.3994 -16.8295 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.3544 REMARK 3 T33: 0.8401 T12: 0.0223 REMARK 3 T13: -0.0071 T23: -0.1142 REMARK 3 L TENSOR REMARK 3 L11: 1.4987 L22: 3.6803 REMARK 3 L33: 2.2727 L12: 0.5866 REMARK 3 L13: -0.8639 L23: 1.9888 REMARK 3 S TENSOR REMARK 3 S11: 0.1209 S12: -0.1511 S13: 0.7776 REMARK 3 S21: -0.1225 S22: 0.2656 S23: -0.9553 REMARK 3 S31: -0.4453 S32: 0.1845 S33: -0.3247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE/HCL, 200 MM REMARK 280 LITHIUM SULFATE, AND 30% (V/V) PEG 400, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.15450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 104.41250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 104.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.23175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 104.41250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 104.41250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.07725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 104.41250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 104.41250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.23175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 104.41250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 104.41250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.07725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.15450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1260 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1431 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 GLU A 113 REMARK 465 ALA A 114 REMARK 465 PRO A 115 REMARK 465 LEU A 116 REMARK 465 THR A 117 REMARK 465 THR A 118 REMARK 465 ARG A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 LEU A 122 REMARK 465 LYS A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 ALA A 126 REMARK 465 PRO A 127 REMARK 465 THR A 128 REMARK 465 ASN A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 THR A 132 REMARK 465 GLU A 714 REMARK 465 HIS A 715 REMARK 465 HIS A 716 REMARK 465 HIS A 717 REMARK 465 HIS A 718 REMARK 465 HIS A 719 REMARK 465 HIS A 720 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 VAL A 418 CG1 CG2 REMARK 470 VAL A 419 CG1 CG2 REMARK 470 LYS A 592 CG CD CE NZ REMARK 470 GLN A 600 CG CD OE1 NE2 REMARK 470 ASN A 601 CG OD1 ND2 REMARK 470 ASP A 620 CG OD1 OD2 REMARK 470 LEU A 621 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 195 30.76 -141.08 REMARK 500 SER A 211 12.95 -140.92 REMARK 500 GLN A 320 -113.76 52.05 REMARK 500 GLN A 320 -112.39 50.03 REMARK 500 TYR A 374 -26.02 -142.33 REMARK 500 TYR A 417 -73.78 -98.45 REMARK 500 VAL A 418 -60.41 -137.34 REMARK 500 ASN A 466 49.01 -141.63 REMARK 500 PHE A 577 -63.32 -100.48 REMARK 500 ASP A 700 -168.01 -101.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1520 DISTANCE = 6.67 ANGSTROMS DBREF1 8JBQ A 1 712 UNP A0A344KRS4_9VIBR DBREF2 8JBQ A A0A344KRS4 26 737 SEQADV 8JBQ MET A 0 UNP A0A344KRS INITIATING METHIONINE SEQADV 8JBQ HIS A 20 UNP A0A344KRS ASN 45 CONFLICT SEQADV 8JBQ ASP A 65 UNP A0A344KRS ASN 90 CONFLICT SEQADV 8JBQ SER A 475 UNP A0A344KRS GLY 500 CONFLICT SEQADV 8JBQ LEU A 713 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ GLU A 714 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 715 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 716 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 717 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 718 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 719 UNP A0A344KRS EXPRESSION TAG SEQADV 8JBQ HIS A 720 UNP A0A344KRS EXPRESSION TAG SEQRES 1 A 721 MET ASN ILE ASN GLU PRO SER GLY GLU ALA ALA ASN ILE SEQRES 2 A 721 ILE SER GLN ALA ALA ASP SER HIS ALA MET LYS TYR TYR SEQRES 3 A 721 ASN ALA ALA ASP TRP GLN ALA GLU ASP ASN ALA LEU PRO SEQRES 4 A 721 SER LEU ALA GLU LEU ARG ASP LEU VAL ILE ASN GLN GLN SEQRES 5 A 721 LYS SER VAL LEU PHE ASP PHE SER GLN ASN SER ASP ALA SEQRES 6 A 721 ASP GLY GLN ALA GLU MET GLN ALA GLN PHE ARG LYS THR SEQRES 7 A 721 TYR GLY VAL GLY PHE ALA ASN GLN PHE ILE PHE ILE THR SEQRES 8 A 721 GLU HIS LYS GLY GLU LEU LEU PHE THR PRO PHE GLU HIS SEQRES 9 A 721 SER GLU GLU VAL ASP PRO LYS LEU LEU GLU ALA PRO LEU SEQRES 10 A 721 THR THR ARG SER GLY LEU LYS SER THR ALA PRO THR ASN SEQRES 11 A 721 SER GLU THR SER THR LEU PRO HIS VAL ALA PHE TYR ILE SEQRES 12 A 721 SER VAL ASN ARG PRO ILE SER ASP GLU GLU CYS THR PHE SEQRES 13 A 721 ASP ASN SER TRP LEU TRP LYS ASP GLU LYS GLY SER ARG SEQRES 14 A 721 PRO PHE CYS LYS ASP ALA ASN ILE SER LEU ILE TYR ARG SEQRES 15 A 721 VAL ASN LEU GLU ARG SER LEU GLN TYR GLY ILE VAL GLY SEQRES 16 A 721 SER ALA THR PRO ASN ALA LYS ILE VAL ARG ILE SER LEU SEQRES 17 A 721 ASP ASP ASP SER SER GLY ALA GLY ILE HIS LEU ASN ASP SEQRES 18 A 721 GLN LEU SER TYR ARG ARG PHE GLY ALA SER TYR THR THR SEQRES 19 A 721 LEU ASP ALA TYR PHE ARG GLU TRP SER THR ASP ALA ILE SEQRES 20 A 721 ALA GLN ASP TYR ARG PHE VAL PHE LYS THR SER ASN ASN SEQRES 21 A 721 LYS ALA GLU ILE LEU GLU THR PHE PRO ILE ASP ASN LEU SEQRES 22 A 721 ASN VAL LYS TYR GLU LYS ARG LYS GLN SER GLY PHE GLU SEQRES 23 A 721 LEU GLY VAL THR GLY GLY ALA GLU VAL SER GLU ASP GLY SEQRES 24 A 721 PRO LYS ALA LYS LEU GLU ALA ARG ALA SER ILE THR GLN SEQRES 25 A 721 SER ARG TRP LEU THR TYR ASN THR GLN ASP TYR ARG VAL SEQRES 26 A 721 GLU ARG ASN ALA LYS ASN ALA GLN THR VAL SER PHE THR SEQRES 27 A 721 TRP ASN ARG GLN GLU TYR ALA THR ALA GLU SER LEU LEU SEQRES 28 A 721 ASN ARG SER THR ASP ALA LEU TRP VAL ASP THR TYR PRO SEQRES 29 A 721 VAL ASP VAL ASN ARG ILE SER PRO LEU SER TYR ALA SER SEQRES 30 A 721 PHE VAL PRO LYS MET ASP VAL ILE TYR LYS ALA SER ASP SEQRES 31 A 721 THR GLU THR GLY SER THR ASP PHE ILE ILE ASP SER SER SEQRES 32 A 721 VAL ASN ILE ARG PRO ILE TYR ASN GLY ALA TYR LYS HIS SEQRES 33 A 721 TYR TYR VAL VAL GLY ALA HIS GLN SER TYR HIS GLY PHE SEQRES 34 A 721 GLU ASN SER PRO ARG ARG ARG ILE THR LYS SER ALA SER SEQRES 35 A 721 PHE THR VAL ASP TRP ASP HIS PRO VAL PHE THR GLY GLY SEQRES 36 A 721 ARG PRO VAL ASN LEU GLN LEU ALA SER PHE ASN ASN ARG SEQRES 37 A 721 CYS VAL GLN VAL ASP ALA GLN SER ARG LEU THR ALA ASN SEQRES 38 A 721 THR CYS ASP ASP GLN GLN SER ALA GLN SER PHE ILE TYR SEQRES 39 A 721 ASP GLN LEU GLY ARG TYR VAL SER ALA SER ASN THR GLU SEQRES 40 A 721 LEU CYS LEU ASP GLY ALA ALA LEU ASP VAL LEU GLN THR SEQRES 41 A 721 CYS ASN GLN ASN LEU THR GLN ARG TRP GLU TRP ARG LYS SEQRES 42 A 721 ASN THR ASP GLU LEU THR ASN VAL TYR SER GLY GLU SER SEQRES 43 A 721 LEU GLY HIS ASP LYS GLN THR GLY GLU LEU GLY LEU TYR SEQRES 44 A 721 ALA SER SER ASN ASP ALA VAL SER LEU ARG THR ILE THR SEQRES 45 A 721 ALA TYR THR ASN VAL PHE ASN VAL GLN LYS SER SER PRO SEQRES 46 A 721 ILE LEU GLY TYR THR GLN GLY LYS MET ASN GLN GLN SER SEQRES 47 A 721 VAL GLY GLN ASN TYR ARG LEU TYR VAL ARG GLU GLY SER SEQRES 48 A 721 ALA ILE ASP ALA LEU GLY THR ALA SER ASP LEU LEU VAL SEQRES 49 A 721 GLY GLY ASN GLY GLY SER LEU THR SER VAL ASP LEU SER SEQRES 50 A 721 GLY VAL LYS SER ILE THR ALA THR SER GLY ASP PHE GLN SEQRES 51 A 721 TYR GLY GLY GLN GLN LEU VAL ALA LEU THR PHE THR TYR SEQRES 52 A 721 GLN ASP GLY ARG GLN GLN MET VAL GLY SER LYS ALA HIS SEQRES 53 A 721 VAL THR ASN ALA HIS GLU ASP ARG PHE ASP LEU PRO ASP SEQRES 54 A 721 ALA ALA LYS ILE THR GLN LEU ASN ILE TRP ALA ASP ASP SEQRES 55 A 721 TRP LEU VAL LYS GLY VAL GLN PHE ASP LEU ASN LEU GLU SEQRES 56 A 721 HIS HIS HIS HIS HIS HIS HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *620(H2 O) HELIX 1 AA1 SER A 6 ALA A 16 1 11 HELIX 2 AA2 ASP A 18 HIS A 20 5 3 HELIX 3 AA3 ALA A 28 ALA A 32 5 5 HELIX 4 AA4 SER A 39 ILE A 48 1 10 HELIX 5 AA5 ASP A 63 GLY A 79 1 17 HELIX 6 AA6 HIS A 103 ASP A 108 5 6 HELIX 7 AA7 ASP A 150 GLU A 152 5 3 HELIX 8 AA8 ASP A 297 ALA A 301 5 5 HELIX 9 AA9 ALA A 346 LEU A 350 5 5 HELIX 10 AB1 ASP A 365 ILE A 369 5 5 HELIX 11 AB2 HIS A 448 GLY A 453 5 6 HELIX 12 AB3 GLN A 486 GLN A 489 5 4 HELIX 13 AB4 ASN A 523 GLN A 526 5 4 SHEET 1 AA1 7 MET A 22 ASN A 26 0 SHEET 2 AA1 7 SER A 53 ASP A 57 1 O LEU A 55 N LYS A 23 SHEET 3 AA1 7 PHE A 86 HIS A 92 -1 O ILE A 87 N PHE A 56 SHEET 4 AA1 7 GLU A 95 PHE A 101 -1 O LEU A 97 N THR A 90 SHEET 5 AA1 7 HIS A 137 PRO A 147 1 O TYR A 141 N PHE A 98 SHEET 6 AA1 7 ASN A 175 SER A 187 -1 O TYR A 180 N ILE A 142 SHEET 7 AA1 7 GLY A 215 HIS A 217 -1 O GLY A 215 N SER A 177 SHEET 1 AA2 9 MET A 22 ASN A 26 0 SHEET 2 AA2 9 SER A 53 ASP A 57 1 O LEU A 55 N LYS A 23 SHEET 3 AA2 9 PHE A 86 HIS A 92 -1 O ILE A 87 N PHE A 56 SHEET 4 AA2 9 GLU A 95 PHE A 101 -1 O LEU A 97 N THR A 90 SHEET 5 AA2 9 HIS A 137 PRO A 147 1 O TYR A 141 N PHE A 98 SHEET 6 AA2 9 ASN A 175 SER A 187 -1 O TYR A 180 N ILE A 142 SHEET 7 AA2 9 ALA A 200 LEU A 207 -1 O ILE A 202 N GLU A 185 SHEET 8 AA2 9 MET A 381 ALA A 387 -1 O VAL A 383 N ILE A 205 SHEET 9 AA2 9 GLU A 262 PHE A 267 -1 N LEU A 264 O ILE A 384 SHEET 1 AA3 2 THR A 154 ASP A 156 0 SHEET 2 AA3 2 SER A 167 PRO A 169 -1 O ARG A 168 N PHE A 155 SHEET 1 AA4 5 TYR A 224 GLY A 228 0 SHEET 2 AA4 5 TYR A 237 THR A 256 -1 O GLU A 240 N PHE A 227 SHEET 3 AA4 5 SER A 394 TYR A 416 -1 O ILE A 408 N THR A 243 SHEET 4 AA4 5 ALA A 421 PHE A 428 -1 O SER A 424 N TYR A 413 SHEET 5 AA4 5 THR A 354 ASP A 355 -1 N ASP A 355 O GLN A 423 SHEET 1 AA5 5 TYR A 322 ASN A 330 0 SHEET 2 AA5 5 THR A 333 ARG A 340 -1 O ASN A 339 N ARG A 323 SHEET 3 AA5 5 TYR A 237 THR A 256 -1 N PHE A 254 O VAL A 334 SHEET 4 AA5 5 SER A 394 TYR A 416 -1 O ILE A 408 N THR A 243 SHEET 5 AA5 5 ARG A 434 ASP A 445 -1 O LYS A 438 N SER A 401 SHEET 1 AA6 2 GLU A 277 VAL A 288 0 SHEET 2 AA6 2 ALA A 307 ASN A 318 -1 O LEU A 315 N LYS A 280 SHEET 1 AA7 2 GLN A 460 LEU A 461 0 SHEET 2 AA7 2 THR A 569 ILE A 570 -1 O ILE A 570 N GLN A 460 SHEET 1 AA8 2 ARG A 467 VAL A 471 0 SHEET 2 AA8 2 LEU A 477 THR A 481 -1 O ASN A 480 N CYS A 468 SHEET 1 AA9 2 PHE A 491 TYR A 493 0 SHEET 2 AA9 2 TYR A 499 SER A 501 -1 O VAL A 500 N ILE A 492 SHEET 1 AB1 2 LEU A 507 CYS A 508 0 SHEET 2 AB1 2 GLN A 518 THR A 519 -1 O GLN A 518 N CYS A 508 SHEET 1 AB2 2 TRP A 528 TRP A 530 0 SHEET 2 AB2 2 LEU A 537 ASN A 539 -1 O THR A 538 N GLU A 529 SHEET 1 AB3 3 LEU A 555 TYR A 558 0 SHEET 2 AB3 3 SER A 545 ASP A 549 -1 N GLY A 547 O GLY A 556 SHEET 3 AB3 3 VAL A 565 SER A 566 -1 O SER A 566 N HIS A 548 SHEET 1 AB4 4 LEU A 586 GLY A 587 0 SHEET 2 AB4 4 VAL A 704 ASN A 712 -1 O VAL A 707 N LEU A 586 SHEET 3 AB4 4 LYS A 691 ALA A 699 -1 N TRP A 698 O LYS A 705 SHEET 4 AB4 4 ASN A 594 SER A 597 -1 N GLN A 596 O LEU A 695 SHEET 1 AB5 4 VAL A 623 GLY A 624 0 SHEET 2 AB5 4 ILE A 612 GLY A 616 -1 N LEU A 615 O VAL A 623 SHEET 3 AB5 4 ARG A 603 GLU A 608 -1 N TYR A 605 O GLY A 616 SHEET 4 AB5 4 SER A 629 ASP A 634 -1 O SER A 629 N GLU A 608 SHEET 1 AB6 4 GLN A 667 GLY A 671 0 SHEET 2 AB6 4 GLN A 653 TYR A 662 -1 N PHE A 660 O GLN A 668 SHEET 3 AB6 4 VAL A 638 PHE A 648 -1 N LYS A 639 O THR A 661 SHEET 4 AB6 4 VAL A 676 ASP A 685 -1 O PHE A 684 N ILE A 641 SSBOND 1 CYS A 153 CYS A 171 1555 1555 2.04 SSBOND 2 CYS A 468 CYS A 482 1555 1555 2.04 SSBOND 3 CYS A 508 CYS A 520 1555 1555 2.04 CISPEP 1 PHE A 267 PRO A 268 0 3.47 CRYST1 208.825 208.825 52.309 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019117 0.00000