HEADER PROTEIN BINDING 10-MAY-23 8JC5 TITLE CRYSTAL STRUCTURE OF PLEKHM1 RUN DOMAIN IN COMPLEX WITH GTP-BOUND TITLE 2 ARL8B(Q75L) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 10C,NOVEL SMALL G COMPND 5 PROTEIN INDISPENSABLE FOR EQUAL CHROMOSOME SEGREGATION 1; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 1; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: PH DOMAIN-CONTAINING FAMILY M MEMBER 1,162 KDA ADAPTER COMPND 13 PROTEIN,AP162; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARL8B, ARL10C, GIE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PLEKHM1, KIAA0356; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLEKHM1, RUN, ARL8B, GTP-BOUND, GTPASE, ARF, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.H.QIU,L.F.PAN REVDAT 1 27-MAR-24 8JC5 0 JRNL AUTH X.QIU,Y.LI,Y.WANG,X.GONG,Y.WANG,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE INTERACTIONS OF ARL8B WITH THE JRNL TITL 2 RUN DOMAINS OF PLEKHM1 AND SKIP. JRNL REF J.MOL.BIOL. V. 435 68293 2023 JRNL REFN ESSN 1089-8638 JRNL PMID 37775038 JRNL DOI 10.1016/J.JMB.2023.168293 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 63813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7500 - 5.7200 0.99 2778 156 0.1584 0.1719 REMARK 3 2 5.7200 - 4.5400 0.98 2723 126 0.1526 0.2202 REMARK 3 3 4.5400 - 3.9700 0.99 2733 142 0.1375 0.1373 REMARK 3 4 3.9600 - 3.6000 0.97 2687 126 0.1460 0.1809 REMARK 3 5 3.6000 - 3.3400 0.98 2654 131 0.1617 0.2153 REMARK 3 6 3.3400 - 3.1500 0.99 2728 125 0.1721 0.2145 REMARK 3 7 3.1500 - 2.9900 1.00 2718 142 0.1757 0.2022 REMARK 3 8 2.9900 - 2.8600 1.00 2711 131 0.1908 0.2478 REMARK 3 9 2.8600 - 2.7500 0.97 2632 154 0.1802 0.2055 REMARK 3 10 2.7500 - 2.6500 0.98 2663 150 0.1766 0.2182 REMARK 3 11 2.6500 - 2.5700 0.99 2651 164 0.1896 0.2485 REMARK 3 12 2.5700 - 2.5000 1.00 2701 147 0.1787 0.2292 REMARK 3 13 2.5000 - 2.4300 1.00 2699 129 0.1737 0.2032 REMARK 3 14 2.4300 - 2.3700 1.00 2729 132 0.1769 0.1946 REMARK 3 15 2.3700 - 2.3200 0.99 2712 117 0.1758 0.2323 REMARK 3 16 2.3200 - 2.2700 0.96 2618 124 0.1793 0.2058 REMARK 3 17 2.2700 - 2.2200 0.54 1453 77 0.2341 0.2672 REMARK 3 18 2.2200 - 2.1800 0.99 2638 149 0.1926 0.2657 REMARK 3 19 2.1800 - 2.1400 0.99 2657 147 0.1945 0.2455 REMARK 3 20 2.1400 - 2.1100 1.00 2695 157 0.1980 0.2171 REMARK 3 21 2.1100 - 2.0700 0.99 2711 147 0.2189 0.2538 REMARK 3 22 2.0700 - 2.0400 0.99 2651 144 0.2508 0.3135 REMARK 3 23 2.0400 - 2.0100 1.00 2711 143 0.2357 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.212 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.056 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5913 REMARK 3 ANGLE : 1.205 8034 REMARK 3 CHIRALITY : 0.062 920 REMARK 3 PLANARITY : 0.006 1013 REMARK 3 DIHEDRAL : 20.316 810 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 29 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6168 -21.6379 34.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.4766 REMARK 3 T33: 0.4248 T12: 0.0069 REMARK 3 T13: -0.0132 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 5.0871 L22: 7.1009 REMARK 3 L33: 7.6047 L12: 1.5554 REMARK 3 L13: 1.1169 L23: 1.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.5476 S13: -0.4607 REMARK 3 S21: -0.0733 S22: 0.2030 S23: -0.7803 REMARK 3 S31: 0.6963 S32: 0.7067 S33: -0.2299 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8481 -16.2444 43.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.2810 T22: 0.6739 REMARK 3 T33: 0.4514 T12: -0.0281 REMARK 3 T13: -0.0147 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 7.0306 L22: 9.5971 REMARK 3 L33: 8.5179 L12: 1.5521 REMARK 3 L13: 0.0905 L23: -0.8394 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.6244 S13: -0.2190 REMARK 3 S21: 0.7853 S22: -0.1723 S23: -0.8334 REMARK 3 S31: -0.2058 S32: 0.9760 S33: 0.2376 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2336 -23.0703 33.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.3292 T22: 0.5559 REMARK 3 T33: 0.5283 T12: 0.0164 REMARK 3 T13: 0.0520 T23: 0.1266 REMARK 3 L TENSOR REMARK 3 L11: 8.7225 L22: 2.1700 REMARK 3 L33: 4.6791 L12: -4.0636 REMARK 3 L13: 0.6718 L23: -0.2999 REMARK 3 S TENSOR REMARK 3 S11: 0.4890 S12: 0.4624 S13: -0.7079 REMARK 3 S21: -0.2515 S22: -0.7376 S23: -0.2733 REMARK 3 S31: 0.2710 S32: 0.9088 S33: 0.3061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1179 -11.4867 27.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.3880 T22: 0.5418 REMARK 3 T33: 0.4503 T12: -0.0515 REMARK 3 T13: 0.0069 T23: 0.2008 REMARK 3 L TENSOR REMARK 3 L11: 6.7020 L22: 2.1134 REMARK 3 L33: 5.2642 L12: -2.7510 REMARK 3 L13: -0.3983 L23: 2.3908 REMARK 3 S TENSOR REMARK 3 S11: -0.3154 S12: 1.6225 S13: 0.7351 REMARK 3 S21: -0.1771 S22: 0.3562 S23: -0.1002 REMARK 3 S31: -0.2627 S32: 0.1653 S33: 0.0797 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9748 -18.2652 32.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.2800 REMARK 3 T33: 0.3049 T12: -0.0320 REMARK 3 T13: 0.0458 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.6602 L22: 5.7628 REMARK 3 L33: 7.8975 L12: -0.8056 REMARK 3 L13: 0.3994 L23: 2.8779 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: 0.4766 S13: -0.0519 REMARK 3 S21: -0.2497 S22: 0.0291 S23: 0.1193 REMARK 3 S31: -0.1575 S32: 0.1354 S33: 0.0772 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2724 -20.6005 47.5851 REMARK 3 T TENSOR REMARK 3 T11: 0.3737 T22: 0.5910 REMARK 3 T33: 0.4856 T12: 0.0234 REMARK 3 T13: 0.0547 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 5.7436 L22: 6.0044 REMARK 3 L33: 5.6447 L12: 5.8280 REMARK 3 L13: 5.6623 L23: 5.7005 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: -1.2119 S13: -0.1962 REMARK 3 S21: 0.6486 S22: -0.1701 S23: 0.4190 REMARK 3 S31: 0.1433 S32: -0.4392 S33: 0.0464 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9898 -28.0085 38.0607 REMARK 3 T TENSOR REMARK 3 T11: 0.3629 T22: 0.2747 REMARK 3 T33: 0.5945 T12: 0.0157 REMARK 3 T13: 0.0704 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 7.8338 L22: 1.7299 REMARK 3 L33: 4.7264 L12: 0.4354 REMARK 3 L13: 1.4202 L23: 0.2630 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.2512 S13: -1.3163 REMARK 3 S21: 0.0467 S22: 0.0029 S23: -0.0973 REMARK 3 S31: 0.6284 S32: 0.1715 S33: -0.0363 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8811 -40.9277 16.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.4056 T22: 0.4057 REMARK 3 T33: 0.3237 T12: -0.0560 REMARK 3 T13: 0.0298 T23: -0.1049 REMARK 3 L TENSOR REMARK 3 L11: 7.1188 L22: 5.5628 REMARK 3 L33: 5.7024 L12: -2.2218 REMARK 3 L13: 0.4014 L23: -1.6750 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0533 S13: -0.6531 REMARK 3 S21: 0.1630 S22: -0.2675 S23: 0.5100 REMARK 3 S31: 0.3462 S32: -0.3443 S33: 0.2049 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2133 -31.6942 20.5044 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.5392 REMARK 3 T33: 0.5212 T12: 0.0244 REMARK 3 T13: 0.0937 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 1.8710 L22: 8.7508 REMARK 3 L33: 7.3188 L12: 1.6823 REMARK 3 L13: 0.1374 L23: 3.3203 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: 0.1580 S13: -0.6644 REMARK 3 S21: 0.4688 S22: -0.2140 S23: 1.1160 REMARK 3 S31: -0.0503 S32: -1.0614 S33: 0.2701 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0273 -43.2828 21.1617 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 0.3836 REMARK 3 T33: 0.3455 T12: -0.0743 REMARK 3 T13: 0.1076 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 5.3750 L22: 2.2761 REMARK 3 L33: 5.8726 L12: 0.1584 REMARK 3 L13: 0.6875 L23: 0.1207 REMARK 3 S TENSOR REMARK 3 S11: -0.2157 S12: -0.4063 S13: -0.6059 REMARK 3 S21: 0.6000 S22: -0.0083 S23: 0.1526 REMARK 3 S31: 0.9581 S32: -0.5558 S33: 0.1896 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6042 -31.3067 14.3764 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 0.3638 REMARK 3 T33: 0.3372 T12: 0.0005 REMARK 3 T13: 0.0580 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 3.3574 L22: 9.6873 REMARK 3 L33: 2.3602 L12: -4.3229 REMARK 3 L13: -1.6330 L23: 1.9612 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.1530 S13: 0.4328 REMARK 3 S21: -0.3247 S22: 0.4190 S23: -0.6465 REMARK 3 S31: -0.2827 S32: 0.2184 S33: -0.3866 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9407 -38.5404 9.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.3281 REMARK 3 T33: 0.2848 T12: 0.0268 REMARK 3 T13: 0.0462 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 5.8348 L22: 5.1085 REMARK 3 L33: 6.4285 L12: -2.5888 REMARK 3 L13: 2.5801 L23: -0.5328 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.0449 S13: 0.1090 REMARK 3 S21: -0.2674 S22: -0.3217 S23: 0.3854 REMARK 3 S31: -0.1605 S32: -0.3552 S33: 0.1841 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2707 -35.7768 3.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.5743 T22: 0.3204 REMARK 3 T33: 0.2147 T12: 0.0590 REMARK 3 T13: 0.0145 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 3.9306 L22: 5.1504 REMARK 3 L33: 6.5385 L12: -0.2890 REMARK 3 L13: 1.6971 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: 0.2428 S13: 0.1571 REMARK 3 S21: -0.9354 S22: -0.2237 S23: 0.0198 REMARK 3 S31: -0.6262 S32: 0.0192 S33: 0.0668 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1474 -36.9781 -0.0753 REMARK 3 T TENSOR REMARK 3 T11: 0.6850 T22: 0.7161 REMARK 3 T33: 0.5752 T12: 0.2195 REMARK 3 T13: -0.2257 T23: -0.1735 REMARK 3 L TENSOR REMARK 3 L11: 5.3751 L22: 1.3669 REMARK 3 L33: 4.0363 L12: -2.1748 REMARK 3 L13: -4.5892 L23: 2.0978 REMARK 3 S TENSOR REMARK 3 S11: 0.2254 S12: 0.7472 S13: 0.1810 REMARK 3 S21: -0.9197 S22: -0.6093 S23: 0.7544 REMARK 3 S31: -0.5366 S32: -1.2168 S33: 0.3615 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7843 -42.3968 -1.9681 REMARK 3 T TENSOR REMARK 3 T11: 0.8059 T22: 0.3804 REMARK 3 T33: 0.3129 T12: 0.0662 REMARK 3 T13: 0.0032 T23: -0.0753 REMARK 3 L TENSOR REMARK 3 L11: 5.4474 L22: 3.5172 REMARK 3 L33: 3.7308 L12: -0.5365 REMARK 3 L13: 1.6351 L23: -3.5108 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: 0.3139 S13: -0.0514 REMARK 3 S21: -1.0419 S22: -0.2848 S23: -0.3478 REMARK 3 S31: -0.1987 S32: -0.0038 S33: 0.4031 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6677 -43.2947 7.8814 REMARK 3 T TENSOR REMARK 3 T11: 0.4657 T22: 0.6886 REMARK 3 T33: 0.6371 T12: -0.0554 REMARK 3 T13: -0.1022 T23: -0.1822 REMARK 3 L TENSOR REMARK 3 L11: 8.7763 L22: 6.7637 REMARK 3 L33: 4.7489 L12: -4.9948 REMARK 3 L13: -5.9825 L23: 4.8511 REMARK 3 S TENSOR REMARK 3 S11: 0.1712 S12: 0.7910 S13: -0.7116 REMARK 3 S21: -0.0519 S22: -0.8198 S23: 1.2245 REMARK 3 S31: 0.5289 S32: -1.5100 S33: 0.7240 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 170 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6740 -51.4978 10.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.8103 T22: 0.4785 REMARK 3 T33: 0.5778 T12: -0.1223 REMARK 3 T13: 0.0330 T23: -0.1628 REMARK 3 L TENSOR REMARK 3 L11: 8.6428 L22: 6.2218 REMARK 3 L33: 2.4767 L12: -0.5671 REMARK 3 L13: -2.7078 L23: -2.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.3120 S13: -1.0708 REMARK 3 S21: -0.2627 S22: -0.5602 S23: 0.3040 REMARK 3 S31: 1.7939 S32: -0.8016 S33: 0.5312 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8597 1.9756 20.2293 REMARK 3 T TENSOR REMARK 3 T11: 0.5204 T22: 0.2964 REMARK 3 T33: 0.2950 T12: -0.0370 REMARK 3 T13: 0.0293 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 6.1182 L22: 6.1668 REMARK 3 L33: 5.6344 L12: -0.0755 REMARK 3 L13: 1.5035 L23: -0.1334 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: -0.0652 S13: 0.6560 REMARK 3 S21: -0.3102 S22: 0.0693 S23: 0.2261 REMARK 3 S31: -0.9172 S32: 0.0613 S33: 0.1213 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3441 -18.9646 14.1855 REMARK 3 T TENSOR REMARK 3 T11: 0.4047 T22: 0.3337 REMARK 3 T33: 0.2996 T12: 0.0152 REMARK 3 T13: 0.0553 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.2245 L22: 1.7242 REMARK 3 L33: 2.8432 L12: -0.7358 REMARK 3 L13: -0.0042 L23: 0.6765 REMARK 3 S TENSOR REMARK 3 S11: -0.1818 S12: 0.1160 S13: -0.1605 REMARK 3 S21: -0.2882 S22: 0.1071 S23: -0.0726 REMARK 3 S31: 0.3833 S32: 0.3654 S33: 0.0650 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9086 -8.7474 22.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.2600 REMARK 3 T33: 0.2629 T12: -0.0311 REMARK 3 T13: 0.0406 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.9429 L22: 3.9218 REMARK 3 L33: 4.9095 L12: -0.0588 REMARK 3 L13: 0.9491 L23: -0.3926 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.1651 S13: 0.1111 REMARK 3 S21: -0.0109 S22: 0.0592 S23: -0.1227 REMARK 3 S31: -0.1719 S32: 0.2452 S33: -0.0530 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 10 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9250 -18.9206 41.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.2936 T22: 0.2793 REMARK 3 T33: 0.2913 T12: 0.0425 REMARK 3 T13: -0.0353 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 6.4100 L22: 3.3143 REMARK 3 L33: 3.3854 L12: 2.7169 REMARK 3 L13: -3.3537 L23: 0.4476 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.2602 S13: 0.0214 REMARK 3 S21: 0.4024 S22: -0.1860 S23: -0.2959 REMARK 3 S31: -0.3099 S32: -0.0125 S33: 0.1820 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 33 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6818 -13.8343 25.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.6472 T22: 0.4625 REMARK 3 T33: 0.5260 T12: 0.0393 REMARK 3 T13: 0.0637 T23: 0.1316 REMARK 3 L TENSOR REMARK 3 L11: 3.7412 L22: 2.5732 REMARK 3 L33: 6.4549 L12: 0.9807 REMARK 3 L13: 0.9224 L23: -3.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.2161 S12: 1.5993 S13: 1.3647 REMARK 3 S21: -0.4474 S22: -0.4535 S23: -0.6581 REMARK 3 S31: -1.3488 S32: 0.4060 S33: 0.3028 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 45 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1630 -32.4947 41.7779 REMARK 3 T TENSOR REMARK 3 T11: 0.3417 T22: 0.2976 REMARK 3 T33: 0.2864 T12: 0.0549 REMARK 3 T13: -0.0321 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 4.5550 L22: 1.7694 REMARK 3 L33: 3.4507 L12: 2.4952 REMARK 3 L13: -0.7320 L23: -0.3893 REMARK 3 S TENSOR REMARK 3 S11: 0.2009 S12: -0.3418 S13: -0.4792 REMARK 3 S21: 0.1582 S22: -0.1264 S23: -0.1823 REMARK 3 S31: 0.2538 S32: 0.4952 S33: -0.0455 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 77 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9322 -36.8428 39.4562 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.3328 REMARK 3 T33: 0.4514 T12: -0.0247 REMARK 3 T13: -0.0226 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 2.1033 L22: 3.5559 REMARK 3 L33: 6.7779 L12: -0.6857 REMARK 3 L13: 1.0209 L23: 0.4435 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: -0.0681 S13: -0.2995 REMARK 3 S21: 0.1897 S22: 0.0370 S23: -0.6809 REMARK 3 S31: -0.1971 S32: 0.8023 S33: 0.0243 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 99 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0626 -38.8462 25.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.3773 T22: 0.3451 REMARK 3 T33: 0.4315 T12: 0.0848 REMARK 3 T13: 0.0563 T23: -0.0945 REMARK 3 L TENSOR REMARK 3 L11: 5.9306 L22: 4.1370 REMARK 3 L33: 4.9434 L12: 3.8045 REMARK 3 L13: 4.6393 L23: 3.7058 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: 0.6215 S13: -1.0674 REMARK 3 S21: -0.0866 S22: 0.5988 S23: -0.8147 REMARK 3 S31: -0.0087 S32: 0.5470 S33: -0.4687 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 114 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2664 -32.5835 30.6695 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.2155 REMARK 3 T33: 0.2234 T12: 0.0008 REMARK 3 T13: 0.0260 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 7.2360 L22: 3.8706 REMARK 3 L33: 3.8423 L12: 0.3104 REMARK 3 L13: 1.7464 L23: -0.7720 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.1589 S13: -0.2994 REMARK 3 S21: -0.0281 S22: -0.0084 S23: 0.0701 REMARK 3 S31: 0.1509 S32: -0.1960 S33: 0.0041 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 141 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0595 -32.2952 39.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2817 REMARK 3 T33: 0.3193 T12: -0.0470 REMARK 3 T13: 0.0161 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 2.4018 L22: 7.3017 REMARK 3 L33: 9.1983 L12: -0.7173 REMARK 3 L13: -0.4609 L23: -5.8977 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: -0.0836 S13: -0.3066 REMARK 3 S21: 0.0697 S22: 0.1188 S23: 0.4292 REMARK 3 S31: 0.1054 S32: -0.6781 S33: -0.0127 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 174 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5176 -24.3730 26.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.4193 T22: 0.3437 REMARK 3 T33: 0.3339 T12: -0.0075 REMARK 3 T13: 0.0136 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.8727 L22: 9.4770 REMARK 3 L33: 3.3946 L12: -5.9204 REMARK 3 L13: 3.0110 L23: -3.9682 REMARK 3 S TENSOR REMARK 3 S11: 0.5589 S12: 0.8340 S13: -0.2486 REMARK 3 S21: -1.0023 S22: -0.5232 S23: -0.1666 REMARK 3 S31: 0.4317 S32: 0.1285 S33: -0.0784 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 183 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5457 -27.1402 45.9686 REMARK 3 T TENSOR REMARK 3 T11: 0.3323 T22: 0.3977 REMARK 3 T33: 0.3897 T12: 0.0236 REMARK 3 T13: -0.0853 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 4.0246 L22: 7.9510 REMARK 3 L33: 5.0411 L12: -1.0959 REMARK 3 L13: -4.4591 L23: 0.1436 REMARK 3 S TENSOR REMARK 3 S11: 0.1934 S12: -0.7586 S13: 0.6129 REMARK 3 S21: 0.8385 S22: 0.4238 S23: -0.6732 REMARK 3 S31: -0.0997 S32: 0.6677 S33: -0.6227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 16-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 83.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CHLORIDE, 0.1 M TRIS REMARK 280 PH=7.6, 18% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.90850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -80.97600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -36.90850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 SER A 186 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ARG B 184 REMARK 465 ARG B 185 REMARK 465 SER B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 LYS D 74 CG CD CE NZ REMARK 470 ARG D 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 77 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 31 O1B GTP B 201 1.35 REMARK 500 O HOH B 354 O HOH B 355 1.86 REMARK 500 O HOH D 365 O HOH D 376 1.88 REMARK 500 OE2 GLU C 106 O HOH C 301 1.88 REMARK 500 O HOH B 331 O HOH B 351 1.95 REMARK 500 NH2 ARG D 68 O HOH D 301 1.97 REMARK 500 OD1 ASP A 71 O HOH A 301 2.15 REMARK 500 OE1 GLU C 43 O HOH C 302 2.16 REMARK 500 OD2 ASP A 171 O HOH A 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 133 CB CYS D 133 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 31 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 131 31.10 72.57 REMARK 500 PHE C 89 35.13 -145.74 REMARK 500 TYR D 33 52.35 -98.23 REMARK 500 LEU D 36 -3.01 64.34 REMARK 500 PHE D 89 33.95 -143.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 34 OG1 REMARK 620 2 THR A 52 OG1 85.2 REMARK 620 3 GTP A 201 O3G 176.2 93.4 REMARK 620 4 GTP A 201 O2B 91.5 176.7 89.9 REMARK 620 5 HOH A 301 O 85.6 87.2 97.9 92.9 REMARK 620 6 HOH A 310 O 89.4 94.2 87.1 85.4 174.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 34 OG1 REMARK 620 2 THR B 52 OG1 83.9 REMARK 620 3 GTP B 201 O3G 173.6 89.7 REMARK 620 4 GTP B 201 O2B 99.4 176.6 86.9 REMARK 620 5 HOH B 305 O 87.1 92.7 92.2 86.7 REMARK 620 6 HOH B 313 O 89.9 85.4 90.6 95.3 176.6 REMARK 620 N 1 2 3 4 5 DBREF 8JC5 A 18 186 UNP Q9NVJ2 ARL8B_HUMAN 18 186 DBREF 8JC5 B 18 186 UNP Q9NVJ2 ARL8B_HUMAN 18 186 DBREF 8JC5 C 10 205 UNP Q9Y4G2 PKHM1_HUMAN 10 205 DBREF 8JC5 D 10 205 UNP Q9Y4G2 PKHM1_HUMAN 10 205 SEQADV 8JC5 LEU A 75 UNP Q9NVJ2 GLN 75 ENGINEERED MUTATION SEQADV 8JC5 LEU B 75 UNP Q9NVJ2 GLN 75 ENGINEERED MUTATION SEQRES 1 A 169 LYS GLU GLU MET GLU LEU THR LEU VAL GLY LEU GLN TYR SEQRES 2 A 169 SER GLY LYS THR THR PHE VAL ASN VAL ILE ALA SER GLY SEQRES 3 A 169 GLN PHE SER GLU ASP MET ILE PRO THR VAL GLY PHE ASN SEQRES 4 A 169 MET ARG LYS VAL THR LYS GLY ASN VAL THR ILE LYS ILE SEQRES 5 A 169 TRP ASP ILE GLY GLY LEU PRO ARG PHE ARG SER MET TRP SEQRES 6 A 169 GLU ARG TYR CYS ARG GLY VAL ASN ALA ILE VAL TYR MET SEQRES 7 A 169 ILE ASP ALA ALA ASP ARG GLU LYS ILE GLU ALA SER ARG SEQRES 8 A 169 ASN GLU LEU HIS ASN LEU LEU ASP LYS PRO GLN LEU GLN SEQRES 9 A 169 GLY ILE PRO VAL LEU VAL LEU GLY ASN LYS ARG ASP LEU SEQRES 10 A 169 PRO ASN ALA LEU ASP GLU LYS GLN LEU ILE GLU LYS MET SEQRES 11 A 169 ASN LEU SER ALA ILE GLN ASP ARG GLU ILE CYS CYS TYR SEQRES 12 A 169 SER ILE SER CYS LYS GLU LYS ASP ASN ILE ASP ILE THR SEQRES 13 A 169 LEU GLN TRP LEU ILE GLN HIS SER LYS SER ARG ARG SER SEQRES 1 B 169 LYS GLU GLU MET GLU LEU THR LEU VAL GLY LEU GLN TYR SEQRES 2 B 169 SER GLY LYS THR THR PHE VAL ASN VAL ILE ALA SER GLY SEQRES 3 B 169 GLN PHE SER GLU ASP MET ILE PRO THR VAL GLY PHE ASN SEQRES 4 B 169 MET ARG LYS VAL THR LYS GLY ASN VAL THR ILE LYS ILE SEQRES 5 B 169 TRP ASP ILE GLY GLY LEU PRO ARG PHE ARG SER MET TRP SEQRES 6 B 169 GLU ARG TYR CYS ARG GLY VAL ASN ALA ILE VAL TYR MET SEQRES 7 B 169 ILE ASP ALA ALA ASP ARG GLU LYS ILE GLU ALA SER ARG SEQRES 8 B 169 ASN GLU LEU HIS ASN LEU LEU ASP LYS PRO GLN LEU GLN SEQRES 9 B 169 GLY ILE PRO VAL LEU VAL LEU GLY ASN LYS ARG ASP LEU SEQRES 10 B 169 PRO ASN ALA LEU ASP GLU LYS GLN LEU ILE GLU LYS MET SEQRES 11 B 169 ASN LEU SER ALA ILE GLN ASP ARG GLU ILE CYS CYS TYR SEQRES 12 B 169 SER ILE SER CYS LYS GLU LYS ASP ASN ILE ASP ILE THR SEQRES 13 B 169 LEU GLN TRP LEU ILE GLN HIS SER LYS SER ARG ARG SER SEQRES 1 C 196 ASP PRO GLN ALA ALA ILE PRO VAL ILE LYS LYS LYS LEU SEQRES 2 C 196 VAL GLY SER VAL LYS ALA LEU GLN LYS GLN TYR VAL SER SEQRES 3 C 196 LEU ASP THR VAL VAL THR SER GLU ASP GLY ASP ALA ASN SEQRES 4 C 196 THR MET CYS SER ALA LEU GLU ALA VAL PHE ILE HIS GLY SEQRES 5 C 196 LEU HIS ALA LYS HIS ILE ARG ALA GLU ALA GLY GLY LYS SEQRES 6 C 196 ARG LYS LYS SER ALA HIS GLN LYS PRO LEU PRO GLN PRO SEQRES 7 C 196 VAL PHE TRP PRO LEU LEU LYS ALA VAL THR HIS LYS HIS SEQRES 8 C 196 ILE ILE SER GLU LEU GLU HIS LEU THR PHE VAL ASN THR SEQRES 9 C 196 ASP VAL GLY ARG CYS ARG ALA TRP LEU ARG LEU ALA LEU SEQRES 10 C 196 ASN ASP GLY LEU MET GLU CYS TYR LEU LYS LEU LEU LEU SEQRES 11 C 196 GLN GLU GLN ALA ARG LEU HIS GLU TYR TYR GLN PRO THR SEQRES 12 C 196 ALA LEU LEU ARG ASP ALA GLU GLU GLY GLU PHE LEU LEU SEQRES 13 C 196 SER PHE LEU GLN GLY LEU THR SER LEU SER PHE GLU LEU SEQRES 14 C 196 SER TYR LYS SER ALA ILE LEU ASN GLU TRP THR LEU THR SEQRES 15 C 196 PRO LEU ALA LEU SER GLY LEU CYS PRO LEU SER GLU LEU SEQRES 16 C 196 ASP SEQRES 1 D 196 ASP PRO GLN ALA ALA ILE PRO VAL ILE LYS LYS LYS LEU SEQRES 2 D 196 VAL GLY SER VAL LYS ALA LEU GLN LYS GLN TYR VAL SER SEQRES 3 D 196 LEU ASP THR VAL VAL THR SER GLU ASP GLY ASP ALA ASN SEQRES 4 D 196 THR MET CYS SER ALA LEU GLU ALA VAL PHE ILE HIS GLY SEQRES 5 D 196 LEU HIS ALA LYS HIS ILE ARG ALA GLU ALA GLY GLY LYS SEQRES 6 D 196 ARG LYS LYS SER ALA HIS GLN LYS PRO LEU PRO GLN PRO SEQRES 7 D 196 VAL PHE TRP PRO LEU LEU LYS ALA VAL THR HIS LYS HIS SEQRES 8 D 196 ILE ILE SER GLU LEU GLU HIS LEU THR PHE VAL ASN THR SEQRES 9 D 196 ASP VAL GLY ARG CYS ARG ALA TRP LEU ARG LEU ALA LEU SEQRES 10 D 196 ASN ASP GLY LEU MET GLU CYS TYR LEU LYS LEU LEU LEU SEQRES 11 D 196 GLN GLU GLN ALA ARG LEU HIS GLU TYR TYR GLN PRO THR SEQRES 12 D 196 ALA LEU LEU ARG ASP ALA GLU GLU GLY GLU PHE LEU LEU SEQRES 13 D 196 SER PHE LEU GLN GLY LEU THR SER LEU SER PHE GLU LEU SEQRES 14 D 196 SER TYR LYS SER ALA ILE LEU ASN GLU TRP THR LEU THR SEQRES 15 D 196 PRO LEU ALA LEU SER GLY LEU CYS PRO LEU SER GLU LEU SEQRES 16 D 196 ASP HET GTP A 201 32 HET MG A 202 1 HET GTP B 201 32 HET MG B 202 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 GTP 2(C10 H16 N5 O14 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *288(H2 O) HELIX 1 AA1 GLY A 32 GLY A 43 1 12 HELIX 2 AA2 LEU A 75 ARG A 79 5 5 HELIX 3 AA3 SER A 80 ARG A 87 1 8 HELIX 4 AA4 ASP A 100 GLU A 102 5 3 HELIX 5 AA5 LYS A 103 ASP A 116 1 14 HELIX 6 AA6 LYS A 117 GLN A 121 5 5 HELIX 7 AA7 ASP A 139 MET A 147 1 9 HELIX 8 AA8 ASN A 148 ILE A 152 5 5 HELIX 9 AA9 ASN A 169 GLN A 179 1 11 HELIX 10 AB1 GLY B 32 GLY B 43 1 12 HELIX 11 AB2 LEU B 75 ARG B 79 5 5 HELIX 12 AB3 SER B 80 ARG B 87 1 8 HELIX 13 AB4 ASP B 100 GLU B 102 5 3 HELIX 14 AB5 LYS B 103 ASP B 116 1 14 HELIX 15 AB6 LYS B 117 GLN B 121 5 5 HELIX 16 AB7 ASP B 139 MET B 147 1 9 HELIX 17 AB8 ASN B 148 ILE B 152 5 5 HELIX 18 AB9 ASN B 169 GLN B 179 1 11 HELIX 19 AC1 ALA C 13 TYR C 33 1 21 HELIX 20 AC2 ASP C 44 HIS C 60 1 17 HELIX 21 AC3 HIS C 63 ARG C 68 1 6 HELIX 22 AC4 PHE C 89 VAL C 96 1 8 HELIX 23 AC5 HIS C 98 HIS C 107 1 10 HELIX 24 AC6 THR C 113 ASP C 128 1 16 HELIX 25 AC7 LEU C 130 GLU C 141 1 12 HELIX 26 AC8 GLU C 141 TYR C 149 1 9 HELIX 27 AC9 ALA C 153 ARG C 156 5 4 HELIX 28 AD1 ASP C 157 GLY C 170 1 14 HELIX 29 AD2 LEU C 171 LEU C 174 5 4 HELIX 30 AD3 SER C 182 GLU C 187 5 6 HELIX 31 AD4 THR C 189 SER C 196 1 8 HELIX 32 AD5 PRO C 200 LEU C 204 5 5 HELIX 33 AD6 ALA D 13 TYR D 33 1 21 HELIX 34 AD7 ASP D 44 HIS D 60 1 17 HELIX 35 AD8 HIS D 63 LYS D 65 5 3 HELIX 36 AD9 PHE D 89 ALA D 95 1 7 HELIX 37 AE1 HIS D 98 HIS D 107 1 10 HELIX 38 AE2 THR D 113 GLY D 129 1 17 HELIX 39 AE3 LEU D 130 GLU D 141 1 12 HELIX 40 AE4 GLU D 141 TYR D 149 1 9 HELIX 41 AE5 ALA D 153 ARG D 156 5 4 HELIX 42 AE6 ASP D 157 GLY D 170 1 14 HELIX 43 AE7 LEU D 171 LEU D 174 5 4 HELIX 44 AE8 SER D 182 GLU D 187 5 6 HELIX 45 AE9 THR D 189 SER D 196 1 8 HELIX 46 AF1 PRO D 200 LEU D 204 5 5 SHEET 1 AA1 6 PHE A 55 LYS A 62 0 SHEET 2 AA1 6 VAL A 65 ILE A 72 -1 O ILE A 67 N VAL A 60 SHEET 3 AA1 6 GLU A 20 GLY A 27 1 N LEU A 25 O TRP A 70 SHEET 4 AA1 6 ALA A 91 ASP A 97 1 O MET A 95 N VAL A 26 SHEET 5 AA1 6 VAL A 125 ASN A 130 1 O LEU A 128 N TYR A 94 SHEET 6 AA1 6 ILE A 157 SER A 161 1 O TYR A 160 N GLY A 129 SHEET 1 AA2 6 PHE B 55 LYS B 62 0 SHEET 2 AA2 6 VAL B 65 ILE B 72 -1 O ILE B 67 N VAL B 60 SHEET 3 AA2 6 GLU B 19 GLY B 27 1 N LEU B 25 O TRP B 70 SHEET 4 AA2 6 ALA B 91 ASP B 97 1 O MET B 95 N VAL B 26 SHEET 5 AA2 6 VAL B 125 ASN B 130 1 O LEU B 126 N ILE B 92 SHEET 6 AA2 6 ILE B 157 SER B 161 1 O CYS B 158 N VAL B 127 SHEET 1 AA3 2 VAL C 39 VAL C 40 0 SHEET 2 AA3 2 SER C 175 PHE C 176 1 O SER C 175 N VAL C 40 SHEET 1 AA4 2 GLU C 70 ALA C 71 0 SHEET 2 AA4 2 HIS C 80 GLN C 81 -1 O HIS C 80 N ALA C 71 SHEET 1 AA5 2 VAL D 40 THR D 41 0 SHEET 2 AA5 2 PHE D 176 GLU D 177 1 O GLU D 177 N VAL D 40 SHEET 1 AA6 2 ILE D 67 ARG D 68 0 SHEET 2 AA6 2 GLN D 86 PRO D 87 -1 O GLN D 86 N ARG D 68 LINK OG1 THR A 34 MG MG A 202 1555 1555 2.01 LINK OG1 THR A 52 MG MG A 202 1555 1555 2.15 LINK O3G GTP A 201 MG MG A 202 1555 1555 1.94 LINK O2B GTP A 201 MG MG A 202 1555 1555 2.19 LINK MG MG A 202 O HOH A 301 1555 1555 2.19 LINK MG MG A 202 O HOH A 310 1555 1555 2.21 LINK OG1 THR B 34 MG MG B 202 1555 1555 2.08 LINK OG1 THR B 52 MG MG B 202 1555 1555 2.20 LINK O3G GTP B 201 MG MG B 202 1555 1555 1.96 LINK O2B GTP B 201 MG MG B 202 1555 1555 2.41 LINK MG MG B 202 O HOH B 305 1555 1555 2.13 LINK MG MG B 202 O HOH B 313 1555 1555 2.03 CRYST1 80.976 73.817 91.959 90.00 114.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012349 0.000000 0.005545 0.00000 SCALE2 0.000000 0.013547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011920 0.00000