HEADER OXIDOREDUCTASE 12-MAY-23 8JD8 TITLE CRYSTAL STRUCTURE OF CITRUS LIMON CU-ZN SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITRUS LIMON; SOURCE 3 ORGANISM_TAXID: 2708; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS SUPEROXIDE DISMUTASE, CITRUS LIMON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.UTAMI,H.YOSHIDA,D.S.RETNONINGRUM,W.T.ISMAYA REVDAT 1 27-DEC-23 8JD8 0 JRNL AUTH R.A.UTAMI,H.YOSHIDA,L.H.KARTADINATA,V.A.ABDILLAH, JRNL AUTH 2 C.R.FARATILLA,D.S.RETNONINGRUM,W.T.ISMAYA JRNL TITL DIRECT RELATIONSHIP BETWEEN DIMERIC FORM AND ACTIVITY IN THE JRNL TITL 2 ACIDIC COPPER-ZINC SUPEROXIDE DISMUTASE FROM LEMON. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 79 301 2023 JRNL REFN ESSN 2053-230X JRNL PMID 38108885 JRNL DOI 10.1107/S2053230X23010646 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2210 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -2.09000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4352 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3866 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5918 ; 1.252 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9036 ; 1.273 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 8.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.750 ;24.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;16.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5140 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 4.089 ; 2.406 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2442 ; 4.087 ; 2.405 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3048 ; 4.885 ; 3.627 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3048 ; 4.884 ; 3.627 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1908 ; 5.376 ; 2.757 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1908 ; 5.376 ; 2.757 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2870 ; 6.217 ; 3.981 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4510 ; 6.583 ;30.539 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4484 ; 6.554 ;30.473 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8218 ; 8.568 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300035571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q2L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, CALCIUM CHLORIDE, REMARK 280 IMIDAZOLE, MES, PEG500 MME, PEG20000, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.27700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 HIS C 11 REMARK 465 HIS C 12 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 HIS D 3 REMARK 465 HIS D 4 REMARK 465 HIS D 5 REMARK 465 HIS D 6 REMARK 465 HIS D 7 REMARK 465 HIS D 8 REMARK 465 HIS D 9 REMARK 465 HIS D 10 REMARK 465 HIS D 11 REMARK 465 HIS D 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 GLN D 13 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 56.02 -145.08 REMARK 500 ARG A 127 -158.73 -91.29 REMARK 500 ASN C 77 56.42 -142.65 REMARK 500 ARG C 127 -158.95 -91.30 REMARK 500 ASN D 67 51.83 -116.17 REMARK 500 ASN D 77 59.03 -150.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 14 O REMARK 620 2 GLY A 165 OXT 98.7 REMARK 620 3 MET C 14 O 172.9 85.6 REMARK 620 4 GLY C 165 O 93.8 89.6 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 ND1 REMARK 620 2 HIS A 60 NE2 129.7 REMARK 620 3 HIS A 75 NE2 84.6 109.3 REMARK 620 4 HIS A 132 NE2 94.7 93.7 150.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 ND1 REMARK 620 2 HIS A 83 ND1 101.4 REMARK 620 3 HIS A 92 ND1 115.0 127.4 REMARK 620 4 ASP A 95 OD1 101.5 97.4 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 58 ND1 REMARK 620 2 HIS B 60 NE2 130.6 REMARK 620 3 HIS B 132 NE2 96.2 107.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 75 ND1 REMARK 620 2 HIS B 83 ND1 103.3 REMARK 620 3 HIS B 92 ND1 110.4 122.8 REMARK 620 4 ASP B 95 OD1 108.2 98.3 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 58 ND1 REMARK 620 2 HIS C 60 NE2 129.4 REMARK 620 3 HIS C 75 NE2 92.4 105.0 REMARK 620 4 HIS C 132 NE2 102.9 83.6 151.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 75 ND1 REMARK 620 2 HIS C 83 ND1 104.9 REMARK 620 3 HIS C 92 ND1 113.8 126.7 REMARK 620 4 ASP C 95 OD1 105.9 95.6 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 58 ND1 REMARK 620 2 HIS D 60 NE2 120.9 REMARK 620 3 HIS D 132 NE2 96.5 128.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 75 ND1 REMARK 620 2 HIS D 83 ND1 105.3 REMARK 620 3 HIS D 92 ND1 112.3 122.6 REMARK 620 4 ASP D 95 OD1 106.1 98.7 110.0 REMARK 620 N 1 2 3 DBREF 8JD8 A 14 165 UNP Q71S31 Q71S31_CITLI 1 152 DBREF 8JD8 B 14 165 UNP Q71S31 Q71S31_CITLI 1 152 DBREF 8JD8 C 14 165 UNP Q71S31 Q71S31_CITLI 1 152 DBREF 8JD8 D 14 165 UNP Q71S31 Q71S31_CITLI 1 152 SEQADV 8JD8 MET A 1 UNP Q71S31 INITIATING METHIONINE SEQADV 8JD8 ASP A 2 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 3 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 4 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 5 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 6 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 7 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 8 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 9 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 10 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 11 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS A 12 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 GLN A 13 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 MET B 1 UNP Q71S31 INITIATING METHIONINE SEQADV 8JD8 ASP B 2 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 3 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 4 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 5 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 6 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 7 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 8 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 9 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 10 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 11 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS B 12 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 GLN B 13 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 MET C 1 UNP Q71S31 INITIATING METHIONINE SEQADV 8JD8 ASP C 2 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 3 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 4 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 5 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 6 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 7 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 8 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 9 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 10 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 11 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS C 12 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 GLN C 13 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 MET D 1 UNP Q71S31 INITIATING METHIONINE SEQADV 8JD8 ASP D 2 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 3 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 4 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 5 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 6 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 7 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 8 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 9 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 10 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 11 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 HIS D 12 UNP Q71S31 EXPRESSION TAG SEQADV 8JD8 GLN D 13 UNP Q71S31 EXPRESSION TAG SEQRES 1 A 165 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLN SEQRES 2 A 165 MET VAL LYS ALA VAL ALA VAL LEU GLY GLY THR GLU GLY SEQRES 3 A 165 VAL LYS GLY THR VAL SER PHE THR GLN GLU GLY ASP GLY SEQRES 4 A 165 PRO THR THR VAL SER GLY SER LEU SER GLY LEU LYS PRO SEQRES 5 A 165 GLY PRO HIS GLY PHE HIS VAL HIS ALA LEU GLY ASP THR SEQRES 6 A 165 THR ASN GLY CYS MET SER THR GLY PRO HIS PHE ASN PRO SEQRES 7 A 165 ALA GLY LYS GLU HIS GLY ALA PRO GLU ASP ASP ASN ARG SEQRES 8 A 165 HIS ALA GLY ASP LEU GLY ASN VAL ASN VAL SER ASP ASP SEQRES 9 A 165 GLY THR ALA THR PHE THR VAL VAL ASP ASN GLN ILE PRO SEQRES 10 A 165 LEU SER GLY PRO ASN SER ILE ILE GLY ARG ALA VAL VAL SEQRES 11 A 165 VAL HIS ALA ASP PRO ASP ASP LEU GLY LYS GLY GLY HIS SEQRES 12 A 165 GLU LEU SER LYS THR THR GLY ASN ALA GLY GLY ARG VAL SEQRES 13 A 165 ALA CYS GLY ILE ILE GLY LEU GLN GLY SEQRES 1 B 165 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLN SEQRES 2 B 165 MET VAL LYS ALA VAL ALA VAL LEU GLY GLY THR GLU GLY SEQRES 3 B 165 VAL LYS GLY THR VAL SER PHE THR GLN GLU GLY ASP GLY SEQRES 4 B 165 PRO THR THR VAL SER GLY SER LEU SER GLY LEU LYS PRO SEQRES 5 B 165 GLY PRO HIS GLY PHE HIS VAL HIS ALA LEU GLY ASP THR SEQRES 6 B 165 THR ASN GLY CYS MET SER THR GLY PRO HIS PHE ASN PRO SEQRES 7 B 165 ALA GLY LYS GLU HIS GLY ALA PRO GLU ASP ASP ASN ARG SEQRES 8 B 165 HIS ALA GLY ASP LEU GLY ASN VAL ASN VAL SER ASP ASP SEQRES 9 B 165 GLY THR ALA THR PHE THR VAL VAL ASP ASN GLN ILE PRO SEQRES 10 B 165 LEU SER GLY PRO ASN SER ILE ILE GLY ARG ALA VAL VAL SEQRES 11 B 165 VAL HIS ALA ASP PRO ASP ASP LEU GLY LYS GLY GLY HIS SEQRES 12 B 165 GLU LEU SER LYS THR THR GLY ASN ALA GLY GLY ARG VAL SEQRES 13 B 165 ALA CYS GLY ILE ILE GLY LEU GLN GLY SEQRES 1 C 165 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLN SEQRES 2 C 165 MET VAL LYS ALA VAL ALA VAL LEU GLY GLY THR GLU GLY SEQRES 3 C 165 VAL LYS GLY THR VAL SER PHE THR GLN GLU GLY ASP GLY SEQRES 4 C 165 PRO THR THR VAL SER GLY SER LEU SER GLY LEU LYS PRO SEQRES 5 C 165 GLY PRO HIS GLY PHE HIS VAL HIS ALA LEU GLY ASP THR SEQRES 6 C 165 THR ASN GLY CYS MET SER THR GLY PRO HIS PHE ASN PRO SEQRES 7 C 165 ALA GLY LYS GLU HIS GLY ALA PRO GLU ASP ASP ASN ARG SEQRES 8 C 165 HIS ALA GLY ASP LEU GLY ASN VAL ASN VAL SER ASP ASP SEQRES 9 C 165 GLY THR ALA THR PHE THR VAL VAL ASP ASN GLN ILE PRO SEQRES 10 C 165 LEU SER GLY PRO ASN SER ILE ILE GLY ARG ALA VAL VAL SEQRES 11 C 165 VAL HIS ALA ASP PRO ASP ASP LEU GLY LYS GLY GLY HIS SEQRES 12 C 165 GLU LEU SER LYS THR THR GLY ASN ALA GLY GLY ARG VAL SEQRES 13 C 165 ALA CYS GLY ILE ILE GLY LEU GLN GLY SEQRES 1 D 165 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLN SEQRES 2 D 165 MET VAL LYS ALA VAL ALA VAL LEU GLY GLY THR GLU GLY SEQRES 3 D 165 VAL LYS GLY THR VAL SER PHE THR GLN GLU GLY ASP GLY SEQRES 4 D 165 PRO THR THR VAL SER GLY SER LEU SER GLY LEU LYS PRO SEQRES 5 D 165 GLY PRO HIS GLY PHE HIS VAL HIS ALA LEU GLY ASP THR SEQRES 6 D 165 THR ASN GLY CYS MET SER THR GLY PRO HIS PHE ASN PRO SEQRES 7 D 165 ALA GLY LYS GLU HIS GLY ALA PRO GLU ASP ASP ASN ARG SEQRES 8 D 165 HIS ALA GLY ASP LEU GLY ASN VAL ASN VAL SER ASP ASP SEQRES 9 D 165 GLY THR ALA THR PHE THR VAL VAL ASP ASN GLN ILE PRO SEQRES 10 D 165 LEU SER GLY PRO ASN SER ILE ILE GLY ARG ALA VAL VAL SEQRES 11 D 165 VAL HIS ALA ASP PRO ASP ASP LEU GLY LYS GLY GLY HIS SEQRES 12 D 165 GLU LEU SER LYS THR THR GLY ASN ALA GLY GLY ARG VAL SEQRES 13 D 165 ALA CYS GLY ILE ILE GLY LEU GLN GLY HET ZN A 201 1 HET CU A 202 1 HET ZN A 203 1 HET ZN B 201 1 HET CU B 202 1 HET ZN C 201 1 HET CU C 202 1 HET ZN D 201 1 HET CU D 202 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION FORMUL 5 ZN 5(ZN 2+) FORMUL 6 CU 4(CU 2+) FORMUL 14 HOH *177(H2 O) HELIX 1 AA1 ASN A 67 GLY A 73 5 7 HELIX 2 AA2 LEU A 145 GLY A 150 1 6 HELIX 3 AA3 ASN B 67 GLY B 73 5 7 HELIX 4 AA4 ASN C 67 GLY C 73 5 7 HELIX 5 AA5 ASN D 67 THR D 72 5 6 SHEET 1 AA1 5 ALA A 107 ASP A 113 0 SHEET 2 AA1 5 THR A 41 SER A 48 -1 N VAL A 43 O VAL A 111 SHEET 3 AA1 5 LYS A 28 GLU A 36 -1 N SER A 32 O SER A 44 SHEET 4 AA1 5 MET A 14 LEU A 21 -1 N ALA A 17 O PHE A 33 SHEET 5 AA1 5 GLY A 162 GLY A 165 -1 O GLN A 164 N LYS A 16 SHEET 1 AA2 4 ASP A 95 VAL A 101 0 SHEET 2 AA2 4 GLY A 53 HIS A 60 -1 N GLY A 53 O VAL A 101 SHEET 3 AA2 4 ALA A 128 HIS A 132 -1 O HIS A 132 N GLY A 56 SHEET 4 AA2 4 ARG A 155 ILE A 160 -1 O ALA A 157 N VAL A 131 SHEET 1 AA3 5 ALA B 107 ASP B 113 0 SHEET 2 AA3 5 THR B 41 SER B 48 -1 N THR B 41 O ASP B 113 SHEET 3 AA3 5 LYS B 28 GLU B 36 -1 N SER B 32 O SER B 44 SHEET 4 AA3 5 MET B 14 LEU B 21 -1 N ALA B 17 O PHE B 33 SHEET 5 AA3 5 GLY B 162 GLN B 164 -1 O GLN B 164 N LYS B 16 SHEET 1 AA4 4 ASP B 95 VAL B 101 0 SHEET 2 AA4 4 GLY B 53 HIS B 60 -1 N GLY B 53 O VAL B 101 SHEET 3 AA4 4 ALA B 128 HIS B 132 -1 O VAL B 130 N HIS B 58 SHEET 4 AA4 4 ARG B 155 ILE B 160 -1 O ALA B 157 N VAL B 131 SHEET 1 AA5 8 ASP C 95 VAL C 101 0 SHEET 2 AA5 8 GLY C 53 HIS C 60 -1 N GLY C 53 O VAL C 101 SHEET 3 AA5 8 ALA C 128 HIS C 132 -1 O HIS C 132 N GLY C 56 SHEET 4 AA5 8 ARG C 155 LEU C 163 -1 O GLY C 159 N VAL C 129 SHEET 5 AA5 8 MET C 14 LEU C 21 -1 N VAL C 18 O GLY C 162 SHEET 6 AA5 8 LYS C 28 GLU C 36 -1 O GLN C 35 N VAL C 15 SHEET 7 AA5 8 THR C 41 SER C 48 -1 O SER C 44 N SER C 32 SHEET 8 AA5 8 ALA C 107 ASP C 113 -1 O VAL C 111 N VAL C 43 SHEET 1 AA6 5 ALA D 107 ASP D 113 0 SHEET 2 AA6 5 THR D 41 SER D 48 -1 N VAL D 43 O VAL D 111 SHEET 3 AA6 5 LYS D 28 GLU D 36 -1 N SER D 32 O SER D 44 SHEET 4 AA6 5 MET D 14 LEU D 21 -1 N ALA D 17 O PHE D 33 SHEET 5 AA6 5 GLY D 162 LEU D 163 -1 O GLY D 162 N VAL D 18 SHEET 1 AA7 4 ASP D 95 VAL D 101 0 SHEET 2 AA7 4 GLY D 53 HIS D 60 -1 N GLY D 53 O VAL D 101 SHEET 3 AA7 4 ALA D 128 HIS D 132 -1 O VAL D 130 N HIS D 58 SHEET 4 AA7 4 ARG D 155 ILE D 160 -1 O ALA D 157 N VAL D 131 SSBOND 1 CYS A 69 CYS A 158 1555 1555 2.05 SSBOND 2 CYS B 69 CYS B 158 1555 1555 2.05 SSBOND 3 CYS C 69 CYS C 158 1555 1555 2.06 SSBOND 4 CYS D 69 CYS D 158 1555 1555 2.05 LINK O MET A 14 ZN ZN A 203 1555 1555 2.20 LINK ND1 HIS A 58 CU CU A 202 1555 1555 2.52 LINK NE2 HIS A 60 CU CU A 202 1555 1555 2.35 LINK ND1 HIS A 75 ZN ZN A 201 1555 1555 1.88 LINK NE2 HIS A 75 CU CU A 202 1555 1555 2.42 LINK ND1 HIS A 83 ZN ZN A 201 1555 1555 2.13 LINK ND1 HIS A 92 ZN ZN A 201 1555 1555 1.99 LINK OD1 ASP A 95 ZN ZN A 201 1555 1555 2.09 LINK NE2 HIS A 132 CU CU A 202 1555 1555 1.93 LINK OXT GLY A 165 ZN ZN A 203 1555 1555 2.32 LINK ZN ZN A 203 O MET C 14 1555 1555 2.34 LINK ZN ZN A 203 O GLY C 165 1555 1555 2.30 LINK ND1 HIS B 58 CU CU B 202 1555 1555 2.27 LINK NE2 HIS B 60 CU CU B 202 1555 1555 2.14 LINK ND1 HIS B 75 ZN ZN B 201 1555 1555 1.93 LINK ND1 HIS B 83 ZN ZN B 201 1555 1555 2.05 LINK ND1 HIS B 92 ZN ZN B 201 1555 1555 2.05 LINK OD1 ASP B 95 ZN ZN B 201 1555 1555 1.95 LINK NE2 HIS B 132 CU CU B 202 1555 1555 1.79 LINK ND1 HIS C 58 CU CU C 202 1555 1555 2.27 LINK NE2 HIS C 60 CU CU C 202 1555 1555 2.56 LINK ND1 HIS C 75 ZN ZN C 201 1555 1555 1.96 LINK NE2 HIS C 75 CU CU C 202 1555 1555 2.32 LINK ND1 HIS C 83 ZN ZN C 201 1555 1555 2.11 LINK ND1 HIS C 92 ZN ZN C 201 1555 1555 1.96 LINK OD1 ASP C 95 ZN ZN C 201 1555 1555 2.04 LINK NE2 HIS C 132 CU CU C 202 1555 1555 1.94 LINK ND1 HIS D 58 CU CU D 202 1555 1555 2.40 LINK NE2 HIS D 60 CU CU D 202 1555 1555 2.10 LINK ND1 HIS D 75 ZN ZN D 201 1555 1555 2.01 LINK ND1 HIS D 83 ZN ZN D 201 1555 1555 2.08 LINK ND1 HIS D 92 ZN ZN D 201 1555 1555 1.99 LINK OD1 ASP D 95 ZN ZN D 201 1555 1555 1.95 LINK NE2 HIS D 132 CU CU D 202 1555 1555 1.88 CRYST1 61.111 74.554 61.686 90.00 106.86 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016364 0.000000 0.004961 0.00000 SCALE2 0.000000 0.013413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016940 0.00000